BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645273|ref|NP_207443.1| aspartate ammonia-lyase
(aspA) [Helicobacter pylori 26695]
(468 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase >gi|23... 525 e-150
pdb|1YFM| Recombinant Yeast Fumarase 353 3e-98
pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.... 345 5e-96
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid >... 345 6e-96
pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substr... 344 1e-95
pdb|1FUO|A Chain A, Fumarase C With Bound Citrate >gi|19421... 344 1e-95
pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish ... 342 7e-95
pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate ... 56 1e-08
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 55 2e-08
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 53 6e-08
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 53 6e-08
pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccina... 52 1e-07
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2... 52 1e-07
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 51 2e-07
pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 47 6e-06
pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase >gi|... 47 6e-06
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crysta... 42 1e-04
pdb|1AOS|A Chain A, Human Argininosuccinate Lyase >gi|29146... 42 1e-04
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crysta... 42 1e-04
pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crysta... 42 1e-04
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crysta... 42 1e-04
pdb|1K62|B Chain B, Crystal Structure Of The Human Arginino... 42 1e-04
pdb|4VHB|A Chain A, Thiocyanate Adduct Of The Bacterial Hem... 28 2.2
pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9... 28 2.2
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trif... 28 2.2
pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18) 28 2.2
pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transi... 28 2.2
pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79a... 28 2.2
pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subti... 26 8.3
>pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 525 bits (1353), Expect = e-150
Identities = 261/470 (55%), Positives = 341/470 (72%), Gaps = 2/470 (0%)
Query: 1 MRIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQ 60
+RIE D +G E+ + YYG+ TLRA ENF+I+N+K+ P F++ VKKAA +AN +
Sbjct: 5 IRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKE 64
Query: 61 LGLIDEKLKIAICHACD-LLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGH 119
L I + + AI ACD +L +GK DQF VD+ QGGAGTS NMN NEV+AN+ LE MGH
Sbjct: 65 LQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGH 124
Query: 120 QKGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHV 179
QKGEYQ+ +PNDHVN+ QSTNDAYP+ +IA+Y L LV + LR+ F +KA EF +
Sbjct: 125 QKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDI 184
Query: 180 IKMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPD 239
+KMGRTQLQDAVPMTLGQEF +++++ +++ + + E+NLG TAIGTG+N+ +
Sbjct: 185 LKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKE 244
Query: 240 YRSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSG 299
Y L KK+ EVTG P V A +LIEAT GAYV V G LKR+AVK+SK+CNDLRLLSSG
Sbjct: 245 YSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSG 304
Query: 300 PRAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVF 359
PRAGLNEINLP++Q GSSIMP KVNPV+PEVVNQVCF VIGND +V +AAE GQLQLNV
Sbjct: 305 PRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVM 364
Query: 360 EPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS 419
EPVI +F S IL A L KC+ GITAN+++C YV+NSIGIVT LNP IG+
Sbjct: 365 EPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNG 424
Query: 420 AMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP-HAFKKHKD 468
++ K ++ +S+ ++ LE+ +LT+ +LDDIF +N++ P + K++ D
Sbjct: 425 DIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTD 474
>pdb|1YFM| Recombinant Yeast Fumarase
Length = 488
Score = 353 bits (905), Expect = 3e-98
Identities = 190/460 (41%), Positives = 281/460 (60%), Gaps = 2/460 (0%)
Query: 2 RIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQL 61
R E D G++ + + Y+G QT R+ +NF I + + +F +KK+A + N L
Sbjct: 29 RTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESL 88
Query: 62 GLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQK 121
G +D K+ AI A D + GK D F + + Q G+GT +NMN NEVI+N A+E +G +
Sbjct: 89 GGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKI 148
Query: 122 GEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERLSN-LVAPMKALRDAFAQKAKEFAHVI 180
G Q HPN+H N+SQS+ND +P+ + IA ++ N L+ + L++A K+KEF H++
Sbjct: 149 GSKQV-HPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIV 207
Query: 181 KMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDY 240
K+GRT LQDA P+TLGQEF Y V+ I++V + + L GGTA+GTG+N+ P +
Sbjct: 208 KIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGF 267
Query: 241 RSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGP 300
I ++I + TG F A N EA + A V+ SG L +A L K+ D+R L SGP
Sbjct: 268 DVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGP 327
Query: 301 RAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVFE 360
R G +E+ LP+ +PGSSIMPGKVNP E + QVC V+GN+ ++ A GQ +LNVF+
Sbjct: 328 RCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFK 387
Query: 361 PVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKSA 420
PV+ L +S ++ A + CVEGI ANE H+ + S+ +VTALNP IGY+ ++
Sbjct: 388 PVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAAS 447
Query: 421 MIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSP 460
+AK A K ++ + ALE +LT+++ D+ PE+ML P
Sbjct: 448 KVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 345 bits (886), Expect = 5e-96
Identities = 182/459 (39%), Positives = 281/459 (60%), Gaps = 3/459 (0%)
Query: 1 MRIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQ 60
+R E D +G +++ + +G QT R+ E+F I+ +K+ + I + A K+AA N
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTS--LIHALALTKRAAAKVNED 61
Query: 61 LGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQ 120
LGL+ E+ AI A D ++ G++ D+F + + Q G+GT +NMNMNEV+AN A E +G
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 121
Query: 121 KGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERL-SNLVAPMKALRDAFAQKAKEFAHV 179
+G + HPND VN+SQS+ND +P+A+ +A L L+ +K L +K++ FA +
Sbjct: 122 RGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADI 181
Query: 180 IKMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPD 239
+K+GRT LQDA P+TLGQE + M++ +++ + + V EL LGGTA+GTG+N+HP+
Sbjct: 182 VKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPE 241
Query: 240 YRSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSG 299
Y + ++ +T PFV A N EA + A VQ G LK +A L K+ ND+R L+SG
Sbjct: 242 YARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 301
Query: 300 PRAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVF 359
PR G+ EI++P+ QPGSSIMPGKVNP E + +C V+GND+++ + G +LNVF
Sbjct: 302 PRCGIGEISIPENQPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVF 361
Query: 360 EPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS 419
P++ + S +L +E+ C GI N + + + S+ +VTALN HIGY+K+
Sbjct: 362 RPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKA 421
Query: 420 AMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENML 458
A IAK+A K ++ AL L++ + D +PE M+
Sbjct: 422 AEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMV 460
>pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 345 bits (885), Expect = 6e-96
Identities = 182/467 (38%), Positives = 283/467 (59%), Gaps = 3/467 (0%)
Query: 1 MRIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQ 60
+R E D +G +++ + +G QT R+ E+F I+ +K+ + I + A K+AA N
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTS--LIHALALTKRAAAKVNED 61
Query: 61 LGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQ 120
LGL+ E+ AI A D ++ G++ D+F + + Q G+GT +NMNMNEV+AN A E +G
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 121
Query: 121 KGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERL-SNLVAPMKALRDAFAQKAKEFAHV 179
+G + HPND VN+SQS+ND +P+A+ +A L L+ +K L +K++ FA +
Sbjct: 122 RGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADI 181
Query: 180 IKMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPD 239
+K+GRT LQDA P+TLGQE + M++ +++ + + V EL LGGTA+GTG+N+HP+
Sbjct: 182 VKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPE 241
Query: 240 YRSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSG 299
Y + ++ +T PFV A N EA + A VQ G LK +A L K+ ND+R L+SG
Sbjct: 242 YARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 301
Query: 300 PRAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVF 359
PR G+ EI++P+ +PGSSIMPGKVNP E + +C V+GND+++ + G +LNVF
Sbjct: 302 PRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVF 361
Query: 360 EPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS 419
P++ + S +L +E+ C GI N + + + S+ +VTALN HIGY+K+
Sbjct: 362 RPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKA 421
Query: 420 AMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENMLSPHAFKKH 466
A IAK+A K ++ AL L++ + D +PE M+ +H
Sbjct: 422 AEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSMKAGRH 468
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 344 bits (883), Expect = 1e-95
Identities = 181/459 (39%), Positives = 281/459 (60%), Gaps = 3/459 (0%)
Query: 1 MRIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQ 60
+R E D +G +++ + +G QT R+ E+F I+ +K+ + I + A K+AA N
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTS--LIHALALTKRAAAKVNED 61
Query: 61 LGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQ 120
LGL+ E+ AI A D ++ G++ D+F + + Q G+GT +NMNMNEV+AN A E +G
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 121
Query: 121 KGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERL-SNLVAPMKALRDAFAQKAKEFAHV 179
+G + HPND VN+SQS+ND +P+A+ +A L L+ +K L +K++ FA +
Sbjct: 122 RGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADI 181
Query: 180 IKMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPD 239
+K+GRT LQDA P+TLGQE + M++ +++ + + V EL LGGTA+GTG+N+HP+
Sbjct: 182 VKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPE 241
Query: 240 YRSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSG 299
Y + ++ +T PFV A N EA + A VQ G LK +A L K+ ND+R L+SG
Sbjct: 242 YARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 301
Query: 300 PRAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVF 359
PR G+ EI++P+ +PGSSIMPGKVNP E + +C V+GND+++ + G +LNVF
Sbjct: 302 PRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVF 361
Query: 360 EPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS 419
P++ + S +L +E+ C GI N + + + S+ +VTALN HIGY+K+
Sbjct: 362 RPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKA 421
Query: 420 AMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENML 458
A IAK+A K ++ AL L++ + D +PE M+
Sbjct: 422 AEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMV 460
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
Length = 467
Score = 344 bits (883), Expect = 1e-95
Identities = 181/459 (39%), Positives = 281/459 (60%), Gaps = 3/459 (0%)
Query: 1 MRIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQ 60
+R E D +G +++ + +G QT R+ E+F I+ +K+ + I + A K+AA N
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTS--LIHALALTKRAAAKVNED 61
Query: 61 LGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQ 120
LGL+ E+ AI A D ++ G++ D+F + + Q G+GT +NMNMNEV+AN A E +G
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 121
Query: 121 KGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERL-SNLVAPMKALRDAFAQKAKEFAHV 179
+G + HPND VN+SQS+ND +P+A+ +A L L+ +K L +K++ FA +
Sbjct: 122 RGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADI 181
Query: 180 IKMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPD 239
+K+GRT LQDA P+TLGQE + M++ +++ + + V EL LGGTA+GTG+N+HP+
Sbjct: 182 VKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPE 241
Query: 240 YRSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSG 299
Y + ++ +T PFV A N EA + A VQ G LK +A L K+ ND+R L+SG
Sbjct: 242 YARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 301
Query: 300 PRAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVF 359
PR G+ EI++P+ +PGSSIMPGKVNP E + +C V+GND+++ + G +LNVF
Sbjct: 302 PRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVF 361
Query: 360 EPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS 419
P++ + S +L +E+ C GI N + + + S+ +VTALN HIGY+K+
Sbjct: 362 RPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKA 421
Query: 420 AMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENML 458
A IAK+A K ++ AL L++ + D +PE M+
Sbjct: 422 AEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMV 460
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 342 bits (876), Expect = 7e-95
Identities = 180/459 (39%), Positives = 281/459 (61%), Gaps = 3/459 (0%)
Query: 1 MRIEHDFIGQMEISDEVYYGIQTLRASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQ 60
+R E D +G +++ + +G QT R+ E+F I+ +K+ + I + A K+AA N
Sbjct: 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTS--LIHALALTKRAAAKVNED 61
Query: 61 LGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQ 120
LGL+ E+ AI A D ++ G++ D+F + + Q G+GT +NMNMNEV+AN A E +G
Sbjct: 62 LGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 121
Query: 121 KGEYQFCHPNDHVNRSQSTNDAYPSALKIAIYERL-SNLVAPMKALRDAFAQKAKEFAHV 179
+G + +PND VN+SQS+ND +P+A+ +A L L+ +K L +K++ FA +
Sbjct: 122 RGMERKVNPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADI 181
Query: 180 IKMGRTQLQDAVPMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPD 239
+K+GRT LQDA P+TLGQE + M++ +++ + + V EL LGGTA+GTG+N+HP+
Sbjct: 182 VKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPE 241
Query: 240 YRSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSG 299
Y + ++ +T PFV A N EA + A VQ G LK +A L K+ ND+R L+SG
Sbjct: 242 YARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 301
Query: 300 PRAGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVF 359
PR G+ EI++P+ +PGSSIMPGKVNP E + +C V+GND+++ + G +LNVF
Sbjct: 302 PRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVF 361
Query: 360 EPVIAYKLFHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS 419
P++ + S +L +E+ C GI N + + + S+ +VTALN HIGY+K+
Sbjct: 362 RPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKA 421
Query: 420 AMIAKEALKSDRSIYDIALEKKILTKEQLDDIFKPENML 458
A IAK+A K ++ AL L++ + D +PE M+
Sbjct: 422 AEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMV 460
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 55.8 bits (133), Expect = 1e-08
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 9/194 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
V+ ++ D +AL + + L+ ++ D +KAKE + + MGRT A P
Sbjct: 88 VHYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEP 147
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
T G + + + R++E+ A+ + + G A+GT N P +E+ + E
Sbjct: 148 TTFGLKLALWHEEMKRNLERFKQAKAGIEVGKISG-AVGTYANIDP----FVEQYVCEKL 202
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKM 312
G + A + T + L IA + K ++R L + E K
Sbjct: 203 G---LKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEEF-FAKG 258
Query: 313 QPGSSIMPGKVNPV 326
Q GSS MP K NP+
Sbjct: 259 QKGSSAMPHKRNPI 272
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 55.1 bits (131), Expect = 2e-08
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 9/219 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
++ +S ND + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 109 LHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQP 168
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 169 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 226
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKM 312
++ N ++A V+ + + LSK+ DL + S+ L + +
Sbjct: 227 -----ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTDSD--AF 279
Query: 313 QPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEG 351
GSS+MP K NP E++ V G S+ + +G
Sbjct: 280 STGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKG 318
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 53.1 bits (126), Expect = 6e-08
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 9/219 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
++ +S N+ + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 107 LHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQP 166
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 167 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 224
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKM 312
++ N ++A V+ V + + LSK+ DL + S+ L +
Sbjct: 225 -----ISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDA--F 277
Query: 313 QPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEG 351
GSS+MP K NP E++ V G S+ + +G
Sbjct: 278 STGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKG 316
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 53.1 bits (126), Expect = 6e-08
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 9/219 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
++ +S ND + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 109 LHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQP 168
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 169 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 226
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKM 312
++ N ++A V+ + + LSK+ DL + S+ L +
Sbjct: 227 -----ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSD--AF 279
Query: 313 QPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEG 351
GSS+MP K NP E++ V G S+ + +G
Sbjct: 280 STGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKG 318
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 52.0 bits (123), Expect = 1e-07
Identities = 51/202 (25%), Positives = 93/202 (45%), Gaps = 19/202 (9%)
Query: 132 HVNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAV 191
+V+ ++ND +A + I L+ + +A+ D A A+++ + +GRT Q A
Sbjct: 89 YVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAE 148
Query: 192 PMTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEV 251
P+TLG +F Y + Q+ A ++R +GG A+GT + S + + +++ E
Sbjct: 149 PITLGFKFANYYYELYIACRQLALAEEFIR-AKIGG-AVGT-MASWGELGLEVRRRVAER 205
Query: 252 TGRPFVMANNLIEATQS----TGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEI 307
G P + + +S A ++ V +R+AV++ ++ S P G
Sbjct: 206 LGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEIREL--------SRPEIG---- 253
Query: 308 NLPKMQPGSSIMPGKVNPVIPE 329
+ + GSS MP K NP E
Sbjct: 254 EVVEGGGGSSAMPHKANPTASE 275
>pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 52.0 bits (123), Expect = 1e-07
Identities = 50/219 (22%), Positives = 95/219 (42%), Gaps = 9/219 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
++ +S ND + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 109 LHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQP 168
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 169 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 226
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKM 312
++ N ++A V+ + + LSK+ DL + S+ L +
Sbjct: 227 -----ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSD--AF 279
Query: 313 QPGSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEG 351
G+S+MP K NP E++ V G S+ + +G
Sbjct: 280 STGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKG 318
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 51.2 bits (121), Expect = 2e-07
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 11/216 (5%)
Query: 137 QSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVPMTLG 196
+S N+ + LK+ + +S + + L ++A +I G T LQ A+P+
Sbjct: 111 RSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWS 170
Query: 197 QEFETYALMVDRDIEQVLDARNWVRELNLG-GTAIGTGINSHPDYRSLIEKKIQEVTGRP 255
Q ++A+ + RD E++ + + + L LG G G + R L+ ++ +
Sbjct: 171 QFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEID---RELLRSELDMTS--- 224
Query: 256 FVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPKMQPG 315
+ N I+A V++ V + + LSK+ DL + S+ G ++ G
Sbjct: 225 --ITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFST-TEFGFVTLS-DAYSTG 280
Query: 316 SSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEG 351
SS++P K NP E++ V G ++ + +G
Sbjct: 281 SSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKG 316
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 46.6 bits (109), Expect = 6e-06
Identities = 71/333 (21%), Positives = 147/333 (43%), Gaps = 31/333 (9%)
Query: 138 STNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVPMTLGQ 197
+++D +A +A+ E L+ +K D + A + H +GRT A P + G
Sbjct: 92 TSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGL 151
Query: 198 EFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVTGRPFV 257
+ + + R+++++ A V + G A+G N P+ EK + + +P
Sbjct: 152 KVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVPPEVE---EKALSYLGLKPEP 207
Query: 258 MANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLP--KMQPG 315
++ ++ + + L +A + ++ ++R L R + E+ P K Q G
Sbjct: 208 VSTQVVPRDR----HAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRG 260
Query: 316 SSIMPGKVNPVIPE---VVNQVCFAVIGNDL-SVALAAE----GGQLQLNVFEPVIAYKL 367
SS MP K NP+ E ++++ A + L ++AL E ++ VF P L
Sbjct: 261 SSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVERYVF-PDATQTL 319
Query: 368 FHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS-AMIAKEA 426
++ V + + E + N + VF+ ++ + + +++ ++ + A
Sbjct: 320 YYMIVTATNVVRNMKVN-EERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNA 378
Query: 427 LK---SDRSIYDIALE----KKILTKEQLDDIF 452
LK S++ + LE KK++TKE+L+++F
Sbjct: 379 LKTWNSEKHFLEYLLEDEEVKKLVTKEELEELF 411
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 46.6 bits (109), Expect = 6e-06
Identities = 71/333 (21%), Positives = 147/333 (43%), Gaps = 31/333 (9%)
Query: 138 STNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVPMTLGQ 197
+++D +A +A+ E L+ +K D + A + H +GRT A P + G
Sbjct: 93 TSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGL 152
Query: 198 EFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVTGRPFV 257
+ + + R+++++ A V + G A+G N P+ EK + + +P
Sbjct: 153 KVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVPPEVE---EKALSYLGLKPEP 208
Query: 258 MANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLP--KMQPG 315
++ ++ + + L +A + ++ ++R L R + E+ P K Q G
Sbjct: 209 VSTQVVPRDR----HAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRG 261
Query: 316 SSIMPGKVNPVIPE---VVNQVCFAVIGNDL-SVALAAE----GGQLQLNVFEPVIAYKL 367
SS MP K NP+ E ++++ A + L ++AL E ++ VF P L
Sbjct: 262 SSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVERYVF-PDATQTL 320
Query: 368 FHSFVILGRAIETLTTKCVEGITANEKICHDYVFNSIGIVTALNPHIGYEKS-AMIAKEA 426
++ V + + E + N + VF+ ++ + + +++ ++ + A
Sbjct: 321 YYMIVTATNVVRNMKVN-EERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNA 379
Query: 427 LK---SDRSIYDIALE----KKILTKEQLDDIF 452
LK S++ + LE KK++TKE+L+++F
Sbjct: 380 LKTWNSEKHFLEYLLEDEEVKKLVTKEELEELF 412
>pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 436
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/166 (22%), Positives = 74/166 (43%), Gaps = 7/166 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
+N +S ND + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 89 LNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQP 148
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 149 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 206
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSS 298
++ N ++A V+ + + LSK+ DL + S+
Sbjct: 207 -----ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 247
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 42.0 bits (97), Expect = 1e-04
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 19/224 (8%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
++ +S ND + L++ + + S L + L +A+ V+ G T LQ A P
Sbjct: 107 LHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQP 166
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAI-GTGINSHPDYRSLIEKKIQEV 251
+ ++A+ + RD E++L+ R + L LG AI G + +++++
Sbjct: 167 IRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLG--------VDRELLRA 218
Query: 252 TGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPK 311
+ N ++AT + LS++ DL L + E + +
Sbjct: 219 ELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCT------KEFSFVQ 272
Query: 312 MQP----GSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEG 351
+ GSS+MP K NP E++ V G + + +G
Sbjct: 273 LSDAYSTGSSLMPQKKNPDSLELIRSKAGRVFGRCAGLLMTLKG 316
>pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 434
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/166 (22%), Positives = 74/166 (43%), Gaps = 7/166 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
+N +S ND + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 91 LNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQP 150
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 151 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 208
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSS 298
++ N ++A V+ + + LSK+ DL + S+
Sbjct: 209 -----ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 249
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 424
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/166 (22%), Positives = 74/166 (43%), Gaps = 7/166 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
+N +S ND + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 77 LNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQP 136
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 137 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 194
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSS 298
++ N ++A V+ + + LSK+ DL + S+
Sbjct: 195 -----ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 235
>pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 418
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/166 (22%), Positives = 74/166 (43%), Gaps = 7/166 (4%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
+N +S ND + LK+ + LS + + L ++A VI G T LQ A P
Sbjct: 77 LNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQP 136
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAIGTGINSHPDYRSLIEKKIQEVT 252
+ Q ++A+ + RD E++ + + + L LG A+ N R ++ +++ +
Sbjct: 137 IRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAG--NPLDIDREMLRSELEFAS 194
Query: 253 GRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSS 298
++ N ++A V+ + + LSK+ DL + S+
Sbjct: 195 -----ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYST 235
>pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 42.0 bits (97), Expect = 1e-04
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 19/224 (8%)
Query: 133 VNRSQSTNDAYPSALKIAIYERLSNLVAPMKALRDAFAQKAKEFAHVIKMGRTQLQDAVP 192
++ +S ND + L++ + + S L + L +A+ V+ G T LQ A P
Sbjct: 107 LHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQP 166
Query: 193 MTLGQEFETYALMVDRDIEQVLDARNWVRELNLGGTAI-GTGINSHPDYRSLIEKKIQEV 251
+ ++A+ + RD E++L+ R + L LG AI G + +++++
Sbjct: 167 IRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLG--------VDRELLRA 218
Query: 252 TGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPK 311
+ N ++AT + LS++ DL L + E + +
Sbjct: 219 ELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCT------KEFSFVQ 272
Query: 312 MQP----GSSIMPGKVNPVIPEVVNQVCFAVIGNDLSVALAAEG 351
+ GSS+MP K NP E++ V G + + +G
Sbjct: 273 LSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKG 316
>pdb|4VHB|A Chain A, Thiocyanate Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|2VHB|A Chain A, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
Stercoraria
pdb|2VHB|B Chain B, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
Stercoraria
pdb|4VHB|B Chain B, Thiocyanate Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|1VHB|A Chain A, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
pdb|1VHB|B Chain B, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
pdb|3VHB|A Chain A, Imidazole Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|3VHB|B Chain B, Imidazole Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp
Length = 146
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/49 (30%), Positives = 25/49 (50%)
Query: 237 HPDYRSLIEKKIQEVTGRPFVMANNLIEATQSTGAYVQVSGVLKRIAVK 285
HP+ R L + QE +P +A ++ A Q+ + +K+IAVK
Sbjct: 36 HPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLPAILPAVKKIAVK 84
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
Length = 264
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Query: 373 ILGRAIETLTTKCVEGITANE--KICHDYVFNSIGIVTALNPHIGYEKSAMIA 423
+ +E + G++ E +IC+DY+ N V+A + GY KS I+
Sbjct: 20 LAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCIS 72
>pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
Length = 263
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Query: 373 ILGRAIETLTTKCVEGITANE--KICHDYVFNSIGIVTALNPHIGYEKSAMIA 423
+ +E + G++ E +IC+DY+ N V+A + GY KS I+
Sbjct: 19 LAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCIS 71
>pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18)
Length = 264
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Query: 373 ILGRAIETLTTKCVEGITANE--KICHDYVFNSIGIVTALNPHIGYEKSAMIA 423
+ +E + G++ E +IC+DY+ N V+A + GY KS I+
Sbjct: 20 LAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCIS 72
>pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transition-State
Inhibitor Complex
Length = 265
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Query: 373 ILGRAIETLTTKCVEGITANE--KICHDYVFNSIGIVTALNPHIGYEKSAMIA 423
+ +E + G++ E +IC+DY+ N V+A + GY KS I+
Sbjct: 20 LAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCIS 72
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Query: 373 ILGRAIETLTTKCVEGITANE--KICHDYVFNSIGIVTALNPHIGYEKSAMIA 423
+ +E + G++ E +IC+DY+ N V+A + GY KS I+
Sbjct: 20 LAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCIS 72
>pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1I6W|A Chain A, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
Length = 181
Score = 26.2 bits (56), Expect = 8.3
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 325 PVIPEVVNQVCFAVIGNDLSVALAAEGGQLQLNVFEPVIAYKLFHSFVILGRAIETLTTK 384
PV+ V +V + + + GG L + + + V LG A T K
Sbjct: 53 PVLSRFVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK 112
Query: 385 CVEGITANEKICHDYVFNSIGIV 407
+ G N+KI + +++S ++
Sbjct: 113 ALPGTDPNQKILYTSIYSSADMI 135
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,534,882
Number of Sequences: 13198
Number of extensions: 100352
Number of successful extensions: 219
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 30
length of query: 468
length of database: 2,899,336
effective HSP length: 92
effective length of query: 376
effective length of database: 1,685,120
effective search space: 633605120
effective search space used: 633605120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)