BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645274|ref|NP_207444.1| hypothetical protein
[Helicobacter pylori 26695]
(196 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Compl... 28 0.71
pdb|1A02|N Chain N, Structure Of The Dna Binding Domains Of... 26 2.7
pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r 25 4.6
pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin 25 4.6
pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r 25 4.6
pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r 25 4.6
pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic ... 25 7.8
>pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
Length = 428
Score = 28.1 bits (61), Expect = 0.71
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 20 KPLNKQVYEGIENCNLCKRHQNSKPVIGLFNPTSKLTFITLTPMLDSQLNFLN--NLKAA 77
K +K V E EN K + K +I L NP++ L L S L+F N N+
Sbjct: 169 KITSKAVKEAYENAQ--KSNIKVKGLI-LTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLV 225
Query: 78 MLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINAC---LFHLTWQLDNSAS----K 130
E VF+ P + SI +L E+E+ C L H+ + L +
Sbjct: 226 CDEIYAATVFDTP-QFVSIAEILD--------EQEMTYCNKDLVHIVYSLSKDMGLPGFR 276
Query: 131 VIVVFGEILPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKKEALAHFKIAL 190
V +++ ++N +++ S +VS +T++FL+ ++ + L++ A+ K
Sbjct: 277 VGIIYS--FNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHK 334
Query: 191 QFLN 194
F N
Sbjct: 335 HFTN 338
>pdb|1A02|N Chain N, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 301
Score = 26.2 bits (56), Expect = 2.7
Identities = 38/147 (25%), Positives = 57/147 (37%), Gaps = 38/147 (25%)
Query: 18 QNKPLNKQVYEGIENCNLCKRH---QNSKPVIGLFNPTSKLTFITLTPMLDSQLNFLNNL 74
+NKPL Q++ G + + K H Q + TS + T +L+ L NN+
Sbjct: 73 ENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNM 132
Query: 75 KAAMLESIIQKVFNCPLKDCS-ILSLLKCDSNSLNLEEEINACLFHLTWQLDNSASKVIV 133
+A + DC+ IL L D E +I ++V +
Sbjct: 133 RATI--------------DCAGILKLRNADIELRKGETDIG-----------RKNTRVRL 167
Query: 134 VFGEILPKRLLNLSKEESFGRIVSLKT 160
VF +P ES GRIVSL+T
Sbjct: 168 VFRVHIP---------ESSGRIVSLQT 185
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 25.4 bits (54), Expect = 4.6
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 75 KAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHLTWQLDNSASKVIVV 134
K +L++ + V PL + L+ L +++ L E + F+LT + S +++
Sbjct: 20 KQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLT---ETSEAEIHQS 76
Query: 135 FGEILPKRLLNLSKEE---SFGRIVSLKTKHFLSTHALED 171
F +L R LN S +E S G + +K + L ED
Sbjct: 77 FQHLL--RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTED 114
>pdb|2ACH|A Chain A, Alpha1 Antichymotrypsin
Length = 360
Score = 25.4 bits (54), Expect = 4.6
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 75 KAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHLTWQLDNSASKVIVV 134
K +L++ + V PL + L+ L +++ L E + F+LT + S +++
Sbjct: 39 KQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLT---ETSEAEIHQS 95
Query: 135 FGEILPKRLLNLSKEE---SFGRIVSLKTKHFLSTHALED 171
F +L R LN S +E S G + +K + L ED
Sbjct: 96 FQHLL--RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTED 133
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 25.4 bits (54), Expect = 4.6
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 75 KAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHLTWQLDNSASKVIVV 134
K +L++ + V PL + L+ L +++ L E + F+LT + S +++
Sbjct: 20 KQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLT---ETSEAEIHQS 76
Query: 135 FGEILPKRLLNLSKEE---SFGRIVSLKTKHFLSTHALED 171
F +L R LN S +E S G + +K + L ED
Sbjct: 77 FQHLL--RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTED 114
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 25.4 bits (54), Expect = 4.6
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 75 KAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHLTWQLDNSASKVIVV 134
K +L++ + V PL + L+ L +++ L E + F+LT + S +++
Sbjct: 20 KQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLT---ETSEAEIHQS 76
Query: 135 FGEILPKRLLNLSKEE---SFGRIVSLKTKHFLSTHALED 171
F +L R LN S +E S G + +K + L ED
Sbjct: 77 FQHLL--RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTED 114
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 24.6 bits (52), Expect = 7.8
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 137 EILPKRLLNLSKEESFGRIVSLKTKHF 163
E + K L NLS+EE +++ LK ++F
Sbjct: 269 ENIYKSLTNLSQEEQITKLLILKLRYF 295
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,030,141
Number of Sequences: 13198
Number of extensions: 37165
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 7
length of query: 196
length of database: 2,899,336
effective HSP length: 83
effective length of query: 113
effective length of database: 1,803,902
effective search space: 203840926
effective search space used: 203840926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)