BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645276|ref|NP_207446.1| phosphoserine phosphatase (serB) [Helicobacter pylori 26695] (207 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1F5S|A  Chain A, Crystal Structure Of Phosphoserine Phos...   174  5e-45
pdb|1J97|A  Chain A, Phospho-Aspartyl Intermediate Analogue ...   172  3e-44
pdb|1L7N|A  Chain A, Transition State Analogue Of Phosphoser...   170  1e-43
pdb|1L7O|A  Chain A, Crystal Structure Of Phosphoserine Phos...   168  5e-43
pdb|2EBN|    Endo-Beta-N-Acetylglucosaminidase F1 (E.C.3.2.1...    27  1.3
pdb|1DMG|A  Chain A, Crystal Structure Of Ribosomal Protein L4     27  2.2
pdb|1QGN|A  Chain A, Cystathionine Gamma-Synthase From Nicot...    26  3.8
pdb|1KJU|A  Chain A, Ca2+-Atpase In The E2 State >gi|2320015...    26  3.8
pdb|1ET8|A  Chain A, Crystal Structure Of Nitrite Reductase ...    25  6.5
pdb|1PYT|D  Chain D, Ternary Complex Of Procarboxypeptidase ...    25  6.5

>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
           Methanococcus Jannaschii
 pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
           Methanococcus Jannaschii
          Length = 211

 Score =  174 bits (442), Expect = 5e-45
 Identities = 94/199 (47%), Positives = 135/199 (67%)

Query: 2   QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMP 61
           +KL +FDFDSTLVN ETI+ +AR  GV +EVK IT +AM G+ +F +SL  RVS LK++P
Sbjct: 5   KKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLP 64

Query: 62  LKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLI 121
           ++  ++  + +   EGA E +  LK + Y V   SGGFD+A N  ++ L LD AF+N LI
Sbjct: 65  IEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLI 124

Query: 122 VENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF 181
           V++  L G V G ++  ++KGE+L  + ++  I+  +T+ VGDGAND+SMFK A +KIAF
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAF 184

Query: 182 NAKEVLKQHATHCINEPDL 200
            AK +LK+ A  CI + DL
Sbjct: 185 CAKPILKEKADICIEKRDL 203

>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
           Phosphatase
 pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
           Phosphatase
          Length = 211

 Score =  172 bits (435), Expect = 3e-44
 Identities = 93/199 (46%), Positives = 134/199 (66%)

Query: 2   QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMP 61
           +KL +F FDSTLVN ETI+ +AR  GV +EVK IT +AM G+ +F +SL  RVS LK++P
Sbjct: 5   KKLILFXFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLP 64

Query: 62  LKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLI 121
           ++  ++  + +   EGA E +  LK + Y V   SGGFD+A N  ++ L LD AF+N LI
Sbjct: 65  IEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLI 124

Query: 122 VENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF 181
           V++  L G V G ++  ++KGE+L  + ++  I+  +T+ VGDGAND+SMFK A +KIAF
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAF 184

Query: 182 NAKEVLKQHATHCINEPDL 200
            AK +LK+ A  CI + DL
Sbjct: 185 CAKPILKEKADICIEKRDL 203

>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
           (Aluminum Fluoride Complex)
 pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
           (Aluminum Fluoride Complex)
 pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
           Phosphatase (Pi Complex)
 pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
           Phosphatase (Pi Complex)
          Length = 211

 Score =  170 bits (430), Expect = 1e-43
 Identities = 92/199 (46%), Positives = 133/199 (66%)

Query: 2   QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMP 61
           +KL +FDFDSTLVN ETI+ +AR  GV +EVK IT +A  G+ +F +SL  RVS LK++P
Sbjct: 5   KKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLP 64

Query: 62  LKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLI 121
           ++  ++  + +   EGA E +  LK + Y V   SGGFD+A N  ++ L LD AF+N LI
Sbjct: 65  IEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLI 124

Query: 122 VENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF 181
           V++  L G V G ++  ++KGE+L  + ++  I+  +T+ VGDGAND+S FK A +KIAF
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISXFKKAGLKIAF 184

Query: 182 NAKEVLKQHATHCINEPDL 200
            AK +LK+ A  CI + DL
Sbjct: 185 CAKPILKEKADICIEKRDL 203

>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
 pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
 pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
           Structure
 pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
           Structure
          Length = 211

 Score =  168 bits (425), Expect = 5e-43
 Identities = 91/199 (45%), Positives = 133/199 (66%)

Query: 2   QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMP 61
           +KL +F+FDSTLVN ETI+ +AR  GV +EVK IT +A  G+ +F +SL  RVS LK++P
Sbjct: 5   KKLILFNFDSTLVNNETIDEIAREAGVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLP 64

Query: 62  LKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLI 121
           ++  ++  + +   EGA E +  LK + Y V   SGGFD+A N  ++ L LD AF+N LI
Sbjct: 65  IEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLI 124

Query: 122 VENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF 181
           V++  L G V G ++  ++KGE+L  + ++  I+  +T+ VGDGAND+S FK A +KIAF
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISXFKKAGLKIAF 184

Query: 182 NAKEVLKQHATHCINEPDL 200
            AK +LK+ A  CI + DL
Sbjct: 185 CAKPILKEKADICIEKRDL 203

>pdb|2EBN|   Endo-Beta-N-Acetylglucosaminidase F1 (E.C.3.2.1.96)
           (Endoglycosidase F1, Endo F1)
          Length = 289

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 26/106 (24%), Positives = 45/106 (41%), Gaps = 21/106 (19%)

Query: 54  VSKLKNMPLKLAKEVCESLP-------------LFEGALELVSALKEKNYKVVCFSGGFD 100
           V+   N   +LA E  +++P              F  A++ V+A    +Y +  + G +D
Sbjct: 145 VTPSNNAAARLAYETKQAMPNKLVTVYVYSRTSSFPTAVDGVNAGSYVDYAIHDYGGSYD 204

Query: 101 LATNH----YRDLLHLDAAFSNTLIVENDALNGLVT----GHMMFS 138
           LATN+       ++     F+        AL  +VT    GHM+F+
Sbjct: 205 LATNYPGLAKSGMVMSSQEFNQGRYATAQALRNIVTKGYGGHMIFA 250

>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
          Length = 225

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 47  HKSLILRVSKLKNMPLKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSG 97
           +K L+L   KL+    K  KE+ ++L L +    +V   KE+ Y  V  SG
Sbjct: 120 NKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSG 170

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
 pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ppca
 pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Appa
 pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
 pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
           Ctcpo
          Length = 445

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 5/115 (4%)

Query: 79  LELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNT---LIVENDALNGLVTGHM 135
           +ELVS L  +   +VC  G F    N     L  D    +    L   ND L G ++G +
Sbjct: 219 IELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL 278

Query: 136 MFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLKQH 190
                   +  +L   LN +    ++   G   L +        A    E+L+ H
Sbjct: 279 KLVSEIRNLHHILGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAEILEAH 331

>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
 pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1EUL|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
           Ions
          Length = 994

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 13/41 (31%), Positives = 19/41 (45%)

Query: 159 TLVVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPD 199
           T + GDG ND    K A I IA  +   + + A+  +   D
Sbjct: 698 TAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADD 738

>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
           From Alcaligenes Faecalis
 pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
 pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
 pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
 pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
 pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
 pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
          Length = 341

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 106 YRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDG 165
           Y D + +    + T +V N A+ G +TG    + + GE +L++    N      L+ G G
Sbjct: 200 YEDTVKVMRTLTPTHVVFNGAV-GALTGDKAMTAAVGEKVLIVHSQANRDTRPNLIGGHG 258

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
           And Chymotrypsinogen C
          Length = 251

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 85  LKEKNYKVVCFSGGFDLATNHYRDLLHLD--------AAFSNTLIVENDALNGLVTGHMM 136
           L++  ++  C  GG  +  NH     H          A   N L VE++A +  V    +
Sbjct: 34  LRDNTWRHTC--GGTLITPNHVLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGVDTI 91

Query: 137 FSHSKGEMLLVLQRLLNISKTNTLVVGD 164
           F H K    LV   +  I    T+ +GD
Sbjct: 92  FVHEKWNSFLVRNDIALIKLAETVELGD 119

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,066,946
Number of Sequences: 13198
Number of extensions: 40683
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 10
length of query: 207
length of database: 2,899,336
effective HSP length: 84
effective length of query: 123
effective length of database: 1,790,704
effective search space: 220256592
effective search space used: 220256592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)