BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645277|ref|NP_207447.1| nonheme iron-containing
ferritin (pfr) [Helicobacter pylori 26695]
(167 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campyloba... 231 4e-62
pdb|1EUM|A Chain A, Crystal Structure Of The E.Coli Ferriti... 151 4e-38
pdb|1RCD| Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 >... 49 2e-07
pdb|1RCI| Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 48 5e-07
pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin >gi|554... 48 7e-07
pdb|1BG7| Localized Unfolding At The Junction Of Three Fe... 46 2e-06
pdb|2FHA| Human H Chain Ferritin >gi|229918|pdb|1FHA| Fe... 45 3e-06
pdb|1RCC| Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 >... 44 7e-06
pdb|1JB0|A Chain A, Crystal Structure Of Photosystem I: A P... 28 0.55
pdb|1JJG|A Chain A, Solution Structure Of Myxoma Virus Prot... 27 0.93
pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of... 27 1.6
pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of... 27 1.6
pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain 27 1.6
pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hex... 26 2.1
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With ... 26 2.1
pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human ... 26 2.1
pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hex... 26 2.1
pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porci... 26 2.7
pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia ... 25 3.5
pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From P... 25 4.6
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 25 4.6
pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demo... 24 7.9
pdb|4FAB|H Chain H, 4-4-20 (IgG2akappa) Fab Fragment - Fluo... 24 7.9
pdb|1FLR|H Chain H, 4-4-20 Fab Fragment 24 7.9
>pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campylobacter Jejuni
Ferritin
Length = 167
Score = 231 bits (588), Expect = 4e-62
Identities = 106/166 (63%), Positives = 135/166 (80%)
Query: 1 MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIVF 60
MLSK+++KLLNEQ+NKEM ++NLY+SMSSWCY +SLDGAG FLF HA+EE +HAKKLI +
Sbjct: 1 MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITY 60
Query: 61 LNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKGKDHATFNFL 120
LNE + V+L + PE F+ L +F+K YEHEQ I++SIN +V+H + KD++TFNFL
Sbjct: 61 LNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFL 120
Query: 121 QWYVSEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRK 166
QWYVSEQHEEE LF+ I+DKI+LIG +GLYLADQY+K IA SRK
Sbjct: 121 QWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKNIALSRK 166
>pdb|1EUM|A Chain A, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|B Chain B, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|C Chain C, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|D Chain D, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|E Chain E, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|F Chain F, Crystal Structure Of The E.Coli Ferritin Ecftna
Length = 165
Score = 151 bits (381), Expect = 4e-38
Identities = 70/156 (44%), Positives = 102/156 (64%)
Query: 1 MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIVF 60
ML ++I+ LNEQ+N E+ SS LY MS+WC H+ +GA FL HA EE H ++L +
Sbjct: 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDY 60
Query: 61 LNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKGKDHATFNFL 120
L + ++ ++ +P ++ L ++FQ+ Y+HEQ I++ IN + A+ +D+ TFNFL
Sbjct: 61 LTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFL 120
Query: 121 QWYVSEQHEEEVLFKDILDKIELIGNENHGLYLADQ 156
QWYVSEQHEEE LFK I+DK+ L G GLY D+
Sbjct: 121 QWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDK 156
>pdb|1RCD| Bullfrog Red Cell L Ferritin TartrateMGPH 5.5
pdb|1RCG| Bullfrog Red Cell L Ferritin SulfateMNPH 6.3
Length = 173
Score = 49.3 bits (116), Expect = 2e-07
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 10 LNEQVNKEMNSSNLYMSMSSWCYTH--SLDGAGLFLFDHAAEEYEHAKKLIVFLNENNVP 67
LN VN + +SS +Y+SM+S+ +L F + + EE EHA+KLI + N+
Sbjct: 17 LNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGR 76
Query: 68 VQLTSISAPEH-KFEGLTQIFQKAYEHEQHISESINNIVDHAI---KGKDHATFNFLQWY 123
V L S+ PE + + Q A + ++ +++++ ++ HA+ K H T Y
Sbjct: 77 VFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDL--HAVAADKSDPHMTDFLESPY 134
Query: 124 VSEQHEEEVLFKDILDKIELIGNENHGL--YLADQYVKG 160
+SE E D + ++ + + + G+ YL +++ G
Sbjct: 135 LSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTLG 173
>pdb|1RCI| Bullfrog Red Cell L Ferritin TartrateMGPH 5.5
Length = 173
Score = 48.1 bits (113), Expect = 5e-07
Identities = 42/159 (26%), Positives = 78/159 (48%), Gaps = 10/159 (6%)
Query: 10 LNEQVNKEMNSSNLYMSMSSWCYTH--SLDGAGLFLFDHAAEEYEHAKKLIVFLNENNVP 67
LN VN + SS +Y+SM+S+ +L F + + EE EHA+KLI + N+
Sbjct: 17 LNRTVNLKFYSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGR 76
Query: 68 VQLTSISAPEH-KFEGLTQIFQKAYEHEQHISESINNIVDHAI---KGKDHATFNFLQWY 123
V L S+ PE + + Q A + ++ +++++ ++ HA+ K H T Y
Sbjct: 77 VFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDL--HAVAADKSDPHMTDFLESPY 134
Query: 124 VSEQHEEEVLFKDILDKIELIGNENHGL--YLADQYVKG 160
+SE E D + ++ + + + G+ YL +++ G
Sbjct: 135 LSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTLG 173
>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin
pdb|1MFR|B Chain B, Crystal Structure Of M Ferritin
pdb|1MFR|C Chain C, Crystal Structure Of M Ferritin
pdb|1MFR|D Chain D, Crystal Structure Of M Ferritin
pdb|1MFR|E Chain E, Crystal Structure Of M Ferritin
pdb|1MFR|F Chain F, Crystal Structure Of M Ferritin
pdb|1MFR|G Chain G, Crystal Structure Of M Ferritin
pdb|1MFR|H Chain H, Crystal Structure Of M Ferritin
pdb|1MFR|I Chain I, Crystal Structure Of M Ferritin
pdb|1MFR|J Chain J, Crystal Structure Of M Ferritin
pdb|1MFR|K Chain K, Crystal Structure Of M Ferritin
pdb|1MFR|L Chain L, Crystal Structure Of M Ferritin
pdb|1MFR|M Chain M, Crystal Structure Of M Ferritin
pdb|1MFR|N Chain N, Crystal Structure Of M Ferritin
pdb|1MFR|O Chain O, Crystal Structure Of M Ferritin
pdb|1MFR|P Chain P, Crystal Structure Of M Ferritin
pdb|1MFR|Q Chain Q, Crystal Structure Of M Ferritin
pdb|1MFR|R Chain R, Crystal Structure Of M Ferritin
pdb|1MFR|S Chain S, Crystal Structure Of M Ferritin
pdb|1MFR|T Chain T, Crystal Structure Of M Ferritin
pdb|1MFR|U Chain U, Crystal Structure Of M Ferritin
pdb|1MFR|V Chain V, Crystal Structure Of M Ferritin
pdb|1MFR|W Chain W, Crystal Structure Of M Ferritin
pdb|1MFR|X Chain X, Crystal Structure Of M Ferritin
Length = 176
Score = 47.8 bits (112), Expect = 7e-07
Identities = 40/154 (25%), Positives = 76/154 (48%), Gaps = 6/154 (3%)
Query: 10 LNEQVNKEMNSSNLYMSMSSWCYTH--SLDGAGLFLFDHAAEEYEHAKKLIVFLNENNVP 67
+N +N E+ +S Y SM ++ +L F +H+ EE EHA+K + + N+
Sbjct: 17 VNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGR 76
Query: 68 VQLTSISAPEHKFEGLT-QIFQKAYEHEQHISESINNIVDHAIKGKDHATFNFLQ-WYVS 125
V L I PE G T + Q A + E+ +++++ ++ A D +FL+ Y+
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLE 136
Query: 126 EQHEEEVLFKDILDKIELIGNENHGL--YLADQY 157
EQ ++ D + ++ +G +G+ YL D++
Sbjct: 137 EQVKDIKRIGDFITNLKRLGLPENGMGEYLFDKH 170
>pdb|1BG7| Localized Unfolding At The Junction Of Three Ferritin Subunits. A
Mechanism For Iron Release?
Length = 176
Score = 46.2 bits (108), Expect = 2e-06
Identities = 41/166 (24%), Positives = 79/166 (46%), Gaps = 12/166 (7%)
Query: 4 KDIIKLLNEQVNKEMNSSNLYMSMSSWCYTH--SLDGAGLFLFDHAAEEYEHAKKLIVFL 61
+D +N VN E+ +S Y+SM+ + +L F + + EE EHA+KL+
Sbjct: 11 RDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQ 70
Query: 62 NENNVPVQLTSISAPEHKFEGLT-QIFQKAYEHEQHISESINNIVDHAIKGKDHATFNFL 120
N+ + L + PE G T + Q A + E+ +++++ ++ H + G D +
Sbjct: 71 NKRGGRIVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQALLDL--HKV-GSDKVDPHLC 127
Query: 121 QWYVSEQHEEEV----LFKDILDKIELIGNENHGL--YLADQYVKG 160
+ +E EE+V D + ++ +G +G+ YL D++ G
Sbjct: 128 DFLETEYPEEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFDKHTMG 173
>pdb|2FHA| Human H Chain Ferritin
pdb|1FHA| Ferritin (H-Chain) Mutant (Lys 86 Replaced By Gln) (K86q)
Length = 183
Score = 45.4 bits (106), Expect = 3e-06
Identities = 41/160 (25%), Positives = 74/160 (45%), Gaps = 12/160 (7%)
Query: 10 LNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGL-----FLFDHAAEEYEHAKKLIVFLNEN 64
+N Q+N E+ +S +Y+SMS Y D L + + EE EHA+KL+ N+
Sbjct: 21 INRQINLELYASYVYLSMS---YYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQR 77
Query: 65 NVPVQLTSISAPE-HKFEGLTQIFQKAYEHEQHISESINNIVDHAIKGKDHATFNFLQ-W 122
+ L I P+ +E + A E+++++S+ + A D +F++
Sbjct: 78 GGRIFLQDIQKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETH 137
Query: 123 YVSEQHEEEVLFKDILDKIELIGNENHGL--YLADQYVKG 160
Y++EQ + D + + +G GL YL D++ G
Sbjct: 138 YLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG 177
>pdb|1RCC| Bullfrog Red Cell L Ferritin TartrateMGPH 5.5
pdb|1RCE| Bullfrog Red Cell L Ferritin SulfateMNPH 6.3
Length = 173
Score = 44.3 bits (103), Expect = 7e-06
Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 10 LNEQVNKEMNSSNLYMSMSSWCYTH--SLDGAGLFLFDHAAEEYEHAKKLIVFLNENNVP 67
LN VN + +SS +Y+SM+S+ +L F + +A HA+KLI + N+
Sbjct: 17 LNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSAAAKAHAEKLIEYQNQRGGR 76
Query: 68 VQLTSISAPEH-KFEGLTQIFQKAYEHEQHISESINNIVDHAI---KGKDHATFNFLQWY 123
V L S+ PE + + Q A + ++ +++++ ++ HA+ K H T Y
Sbjct: 77 VFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDL--HAVAADKSDPHMTDFLESPY 134
Query: 124 VSEQHEEEVLFKDILDKIELIGNENHGL--YLADQYVKG 160
+SE E D + ++ + + + G+ YL +++ G
Sbjct: 135 LSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTLG 173
>pdb|1JB0|A Chain A, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 755
Score = 28.1 bits (61), Expect = 0.55
Identities = 23/76 (30%), Positives = 32/76 (41%), Gaps = 10/76 (13%)
Query: 39 AGLFLFDHAAEEYEHAKKLIVFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYE-HEQHI 97
AGL LF ++ A KL F N S H GL + A+ H+ H+
Sbjct: 169 AGLMLFAGWFHYHKRAPKLEWFQNVE---------SMLNHHLAGLLGLGSLAWAGHQIHV 219
Query: 98 SESINNIVDHAIKGKD 113
S IN ++D + KD
Sbjct: 220 SLPINKLLDAGVAAKD 235
>pdb|1JJG|A Chain A, Solution Structure Of Myxoma Virus Protein M156r
Length = 102
Score = 27.3 bits (59), Expect = 0.93
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 128 HEEEVLFKDILDKIELIGNENHGLYLAD 155
HE V FKD + K+ L+G E H L D
Sbjct: 36 HEGIVYFKDGIFKVRLLGYEGHECILLD 63
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 104 IVDHAIKGKDHATFNFLQWYVSEQHEEEVL 133
++DH + ++ TF+FL + E EEE++
Sbjct: 82 VLDHDVSKEEPVTFHFLAKFYPENAEEELV 111
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 104 IVDHAIKGKDHATFNFLQWYVSEQHEEEVL 133
++DH + ++ TF+FL + E EEE++
Sbjct: 82 VLDHDVSKEEPVTFHFLAKFYPENAEEELV 111
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 104 IVDHAIKGKDHATFNFLQWYVSEQHEEEVL 133
++DH + ++ TF+FL + E EEE++
Sbjct: 64 VLDHDVSKEEPVTFHFLAKFYPENAEEELV 93
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 26.2 bits (56), Expect = 2.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 KLLNEQVNKEMNSSNLYMSMSSWCYTHSL-DGAGLFLFDHAAE 49
++L QVN E N N++M + ++ G+G LFDH AE
Sbjct: 91 RILRVQVNHEKNQ-NVHMESEVYDTPENIVHGSGSQLFDHVAE 132
>pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
Length = 917
Score = 26.2 bits (56), Expect = 2.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 KLLNEQVNKEMNSSNLYMSMSSWCYTHSL-DGAGLFLFDHAAE 49
++L QVN E N N++M + ++ G+G LFDH AE
Sbjct: 91 RILRVQVNHEKNQ-NVHMESEVYDTPENIVHGSGSQLFDHVAE 132
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 26.2 bits (56), Expect = 2.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 KLLNEQVNKEMNSSNLYMSMSSWCYTHSL-DGAGLFLFDHAAE 49
++L QVN E N N++M + ++ G+G LFDH AE
Sbjct: 91 RILRVQVNHEKNQ-NVHMESEVYDTPENIVHGSGSQLFDHVAE 132
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 26.2 bits (56), Expect = 2.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 KLLNEQVNKEMNSSNLYMSMSSWCYTHSL-DGAGLFLFDHAAE 49
++L QVN E N N++M + ++ G+G LFDH AE
Sbjct: 91 RILRVQVNHEKNQ-NVHMESEVYDTPENIVHGSGSQLFDHVAE 132
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 25.8 bits (55), Expect = 2.7
Identities = 12/53 (22%), Positives = 25/53 (46%)
Query: 114 HATFNFLQWYVSEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRK 166
H T + + + + +++LF+D + +G + YL Y+ +A RK
Sbjct: 620 HVTDCSSSFCMFKSNTKDLLFRDDTQCLARVGKTTYESYLGADYITAVANLRK 672
>pdb|1KAS| Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin
Length = 412
Score = 25.4 bits (54), Expect = 3.5
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Query: 37 DGAGLFLFDHAAEEYEHAKK 56
DGAG+ + EEYEHAKK
Sbjct: 233 DGAGMLVL----EEYEHAKK 248
>pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From Phanerochaete
Chrysosporium. Catalytic Module At 1.32 Ang Resolution
Length = 431
Score = 25.0 bits (53), Expect = 4.6
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 6 IIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAG 40
++KLLN++ +++ SNL ++ Y ++D G
Sbjct: 116 LLKLLNQEFTFDVDMSNLPCGLNGALYLSAMDADG 150
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 25.0 bits (53), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 92 EHEQHISESINNIVDHAIKGKDHATFNFLQWYVSEQHEEEVLFKDILDKIELIGN 146
E++ I + I+ ++D A+K K+ F L E ++ + LD+I IGN
Sbjct: 216 ENKDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGN 270
>pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demonstrates Its Dual
Role In Sequestering And Transporting Ferric Ions
Simultaneously:crystal Structure Of Camel
Apo-Lactoferrin At 2.6a Resolution.
pdb|1I6Q|A Chain A, Formation Of A Protein Intermediate And Its Trapping By
The Simultaneous Crystallization Process: Crystal
Structure Of An Iron-Saturated Intermediate In The Fe3+
Binding Pathway Of Camel Lactoferrin At 2.7 Resolution
Length = 689
Score = 24.3 bits (51), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 130 EEVLFKDILDKI-ELIGNENHGLYLADQYVKGIAKSRK 166
+ +LF D + + +L G + YL QYV IAK R+
Sbjct: 637 KNLLFNDNTECLAKLQGKTTYDEYLGPQYVTAIAKLRR 674
>pdb|4FAB|H Chain H, 4-4-20 (IgG2akappa) Fab Fragment - Fluorescein (Dianion)
Complex
Length = 216
Score = 24.3 bits (51), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 75 APEHKFEGLTQIFQKAYEHEQHISESI 101
+PE E + QI K Y +E + S+S+
Sbjct: 40 SPEKGLEWVAQIRNKPYNYETYYSDSV 66
>pdb|1FLR|H Chain H, 4-4-20 Fab Fragment
Length = 219
Score = 24.3 bits (51), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 75 APEHKFEGLTQIFQKAYEHEQHISESI 101
+PE E + QI K Y +E + S+S+
Sbjct: 40 SPEKGLEWVAQIRNKPYNYETYYSDSV 66
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 963,517
Number of Sequences: 13198
Number of extensions: 37293
Number of successful extensions: 157
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 24
length of query: 167
length of database: 2,899,336
effective HSP length: 81
effective length of query: 86
effective length of database: 1,830,298
effective search space: 157405628
effective search space used: 157405628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)