BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645278|ref|NP_207448.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(360 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GV1|A Chain A, Structural Basis For Thermophilic Prote... 28 1.6
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 28 2.1
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 28 2.1
pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Prote... 27 2.8
pdb|1ACC| Anthrax Protective Antigen 27 3.6
pdb|1AYX| Crystal Structure Of Glucoamylase From Saccharo... 27 4.7
pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e... 26 6.2
pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n... 26 6.2
pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h... 26 6.2
pdb|1YGE| Lipoxygenase-1 (Soybean) At 100k >gi|14719443|p... 26 6.2
pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e... 26 6.2
pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a... 26 6.2
pdb|1QGO|A Chain A, Anaerobic Cobalt Chelatase In Cobalamin... 26 6.2
pdb|3PJR|A Chain A, Helicase Substrate Complex >gi|2781090|... 26 8.0
pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp 26 8.0
pdb|2PJR|F Chain F, Helicase Product Complex >gi|9257172|pd... 26 8.0
pdb|1K0M|B Chain B, Crystal Structure Of A Soluble Monomeri... 26 8.0
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 306 GANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSL 353
G+ND T + + + AG + G+ +EDL+ +K+AG V D++
Sbjct: 60 GSNDYADTADSDIVIITAGLPRKPGMTREDLL--MKNAGIVKEVTDNI 105
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 151 ELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWL-EIHAYWHKLGKMSNATM 209
+L +ED + +D GG I D E+ + + N S WL + A +G+M A++
Sbjct: 182 KLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASV 241
Query: 210 LFGH 213
H
Sbjct: 242 NRSH 245
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 151 ELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWL-EIHAYWHKLGKMSNATM 209
+L +ED + +D GG I D E+ + + N S WL + A +G+M A++
Sbjct: 182 KLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASV 241
Query: 210 LFGH 213
H
Sbjct: 242 NRSH 245
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 27.3 bits (59), Expect = 2.8
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Query: 306 GANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSL 353
G+ND T + + AG + G+ +EDL+ +K+AG V D++
Sbjct: 60 GSNDYADTANSDIVIITAGLPRKPGMTREDLL--MKNAGIVKEVTDNI 105
>pdb|1ACC| Anthrax Protective Antigen
Length = 735
Score = 26.9 bits (58), Expect = 3.6
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 9 DNQVTES--KELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFC 66
D Q +++ +L L ++YT V D+++ N I+ + H + +NI A +
Sbjct: 555 DQQTSQNIKNQLAELNATNIYT---VLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESV 611
Query: 67 AFSAHRKNPNPYE----MSLEEILEKVKNSY------NKGIKEV 100
AHR+ N +++++ + K+ + Y +G+KEV
Sbjct: 612 VKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEV 655
>pdb|1AYX| Crystal Structure Of Glucoamylase From Saccharomycopsis Fibuligera
At 1.7 Angstroms
Length = 492
Score = 26.6 bits (57), Expect = 4.7
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 79 EMSLEEILEKV---KNSYNKGIKEVHIVS--AHNPNYSYEWYLK---VFETIKQEMPNLH 130
E+SL +L+ + + +N G+ I S NP+Y Y+W F T+ E+ + +
Sbjct: 27 EVSLYYLLQNIAYPEGQFNNGVPGTVIASPSTSNPDYYYQWTRDSAITFLTVLSELEDNN 86
Query: 131 LKAMTAAEV-HFLSVKFN 147
A V ++++ +N
Sbjct: 87 FNTTLAKAVEYYINTSYN 104
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 26.2 bits (56), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLY 27
L+ + N E KE R+YDYD+Y
Sbjct: 166 LKSLRGNGTGERKEYDRIYDYDVY 189
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 26.2 bits (56), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLY 27
L+ + N E KE R+YDYD+Y
Sbjct: 166 LKSLRGNGTGERKEYDRIYDYDVY 189
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 26.2 bits (56), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLY 27
L+ + N E KE R+YDYD+Y
Sbjct: 166 LKSLRGNGTGERKEYDRIYDYDVY 189
>pdb|1YGE| Lipoxygenase-1 (Soybean) At 100k
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|2SBL|B Chain B, Lipoxygenase-1 (Soybean) (E.C.1.13.11.12)
Length = 839
Score = 26.2 bits (56), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLY 27
L+ + N E KE R+YDYD+Y
Sbjct: 166 LKSLRGNGTGERKEYDRIYDYDVY 189
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 26.2 bits (56), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLY 27
L+ + N E KE R+YDYD+Y
Sbjct: 166 LKSLRGNGTGERKEYDRIYDYDVY 189
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 26.2 bits (56), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLY 27
L+ + N E KE R+YDYD+Y
Sbjct: 166 LKSLRGNGTGERKEYDRIYDYDVY 189
>pdb|1QGO|A Chain A, Anaerobic Cobalt Chelatase In Cobalamin Biosynthesis From
Salmonella Typhimurium
Length = 264
Score = 26.2 bits (56), Expect = 6.2
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 69 SAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPN 128
S H N + YE + E+ + ++ + + V ++S+HN Y+++ + ++Q+MP+
Sbjct: 81 SLHIINGDEYEKIVREV-QLLRPLFTRLTLGVPLLSSHND------YVQLMQALRQQMPS 133
Query: 129 L 129
L
Sbjct: 134 L 134
>pdb|3PJR|A Chain A, Helicase Substrate Complex
pdb|1PJR| Structure Of Dna Helicase
pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
Length = 724
Score = 25.8 bits (55), Expect = 8.0
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Query: 1 MDFL-EKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNIC 59
M+FL E++L + E +E VR + L + + + +I Y +H+ P NI
Sbjct: 1 MNFLSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNIL 60
Query: 60 A 60
A
Sbjct: 61 A 61
>pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp
Length = 167
Score = 25.8 bits (55), Expect = 8.0
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Query: 1 MDFL-EKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNIC 59
M+FL E++L + E +E VR + L + + + +I Y +H+ P NI
Sbjct: 1 MNFLSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNIL 60
Query: 60 A 60
A
Sbjct: 61 A 61
>pdb|2PJR|F Chain F, Helicase Product Complex
pdb|2PJR|A Chain A, Helicase Product Complex
Length = 548
Score = 25.8 bits (55), Expect = 8.0
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Query: 1 MDFL-EKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNIC 59
M+FL E++L + E +E VR + L + + + +I Y +H+ P NI
Sbjct: 1 MNFLSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNIL 60
Query: 60 A 60
A
Sbjct: 61 A 61
>pdb|1K0M|B Chain B, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
pdb|1K0M|A Chain A, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
pdb|1K0N|A Chain A, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0O|A Chain A, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0N|B Chain B, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0O|B Chain B, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
Length = 241
Score = 25.8 bits (55), Expect = 8.0
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 53 LNPSNICADACKFCAFSAHRKNPNPYEMSLEEILEK 88
LNP + A F FSA+ KN NP +L + LEK
Sbjct: 99 LNPESNTAGLDIFAKFSAYIKNSNP---ALNDNLEK 131
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,097,078
Number of Sequences: 13198
Number of extensions: 85548
Number of successful extensions: 257
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 17
length of query: 360
length of database: 2,899,336
effective HSP length: 89
effective length of query: 271
effective length of database: 1,724,714
effective search space: 467397494
effective search space used: 467397494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)