BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645279|ref|NP_207449.1| protective surface antigen
D15 [Helicobacter pylori 26695]
(916 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TME|1 Chain 1, Theiler's Murine Encephalomyelitis Viru... 28 3.5
pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudo... 28 4.6
pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudo... 28 4.6
pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i >... 28 4.6
pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzym... 28 4.6
pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudo... 28 4.6
pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant ... 28 4.6
pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v >g... 28 4.6
pdb|1TMF|1 Chain 1, Theiler's Murine Encephalomyelitis Viru... 28 6.0
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 27 7.8
>pdb|1TME|1 Chain 1, Theiler's Murine Encephalomyelitis Virus (Da Strain)
Length = 274
Score = 28.5 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 855 WRASTG-LQIEWISPMGPLVLIFPIAFFNQWGDGNGKKCKGLCFNPNMD 902
W G QI ++ P + + P A+FN W D K G+ PN D
Sbjct: 174 WLVGAGNTQISFVVPYNSPLSVLPAAWFNGWSDFGNTKDFGVA--PNAD 220
>pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 359
Score = 28.1 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 467 RTGQLQFGLGYGSYGGLMLNGSV 489
RT Q+ G G YGG ML GS+
Sbjct: 272 RTAQIAEAAGIGLYGGTMLEGSI 294
>pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 361
Score = 28.1 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 467 RTGQLQFGLGYGSYGGLMLNGSV 489
RT Q+ G G YGG ML GS+
Sbjct: 274 RTAQIAEAAGIGLYGGTMLEGSI 296
>pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i
pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i
Length = 373
Score = 28.1 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 467 RTGQLQFGLGYGSYGGLMLNGSV 489
RT Q+ G G YGG ML GS+
Sbjct: 285 RTAQIAEAAGIGLYGGTMLEGSI 307
>pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
Length = 373
Score = 28.1 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 467 RTGQLQFGLGYGSYGGLMLNGSV 489
RT Q+ G G YGG ML GS+
Sbjct: 285 RTAQIAEAAGIGLYGGTMLEGSI 307
>pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 358
Score = 28.1 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 467 RTGQLQFGLGYGSYGGLMLNGSV 489
RT Q+ G G YGG ML GS+
Sbjct: 271 RTAQIAEAAGIGLYGGTMLEGSI 293
>pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant
pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant
Length = 372
Score = 28.1 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 467 RTGQLQFGLGYGSYGGLMLNGSV 489
RT Q+ G G YGG ML GS+
Sbjct: 284 RTAQIAEAAGIGLYGGTMLEGSI 306
>pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v
pdb|3MUC|B Chain B, Muconate Cycloisomerase Variant I54v
Length = 369
Score = 28.1 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 467 RTGQLQFGLGYGSYGGLMLNGSV 489
RT Q+ G G YGG ML GS+
Sbjct: 282 RTAQIAEAAGIGLYGGTMLEGSI 304
>pdb|1TMF|1 Chain 1, Theiler's Murine Encephalomyelitis Virus Coat Protein
(Bean Strain)
Length = 276
Score = 27.7 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 855 WRASTG-LQIEWISPMGPLVLIFPIAFFNQWGDGNGKKCKGLCFNPNMD 902
W G Q+ ++ P + + P A+FN W D K G+ PN D
Sbjct: 176 WLVGAGNSQVSFVVPYNSPLSVLPAAWFNGWSDFGNTKDFGVA--PNAD 222
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 404 NQRTSDRIIRRELLLGPKDKYNLTKLRNSENSLRRLGFFSKVKIEEK 450
N++ + + ++ + DK+N ++ S ++L +L S+VK+ +K
Sbjct: 817 NEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDK 863
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,704,112
Number of Sequences: 13198
Number of extensions: 261692
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 10
length of query: 916
length of database: 2,899,336
effective HSP length: 97
effective length of query: 819
effective length of database: 1,619,130
effective search space: 1326067470
effective search space used: 1326067470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)