BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645280|ref|NP_207450.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(383 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With ... 30 0.35
pdb|1CLK|A Chain A, Crystal Structure Of Streptomyces Diast... 29 1.0
pdb|1QT1|A Chain A, Crystal Structure Of Xylose Isomerase F... 28 2.3
pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease R... 27 3.0
pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Aci... 27 3.9
pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Sy... 27 3.9
pdb|6XIA| D-Xylose Isomerase (E.C.5.3.1.5) (Glucose Isome... 27 3.9
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Sy... 27 3.9
pdb|1E3Y|A Chain A, Death Domain From Human FaddMORT1 >gi|1... 26 6.6
pdb|1IVM|A Chain A, Solution Structure Of Mouse Lysozyme M 26 8.6
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|A Chain A, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|M Chain M, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 602
Score = 30.4 bits (67), Expect = 0.35
Identities = 25/129 (19%), Positives = 62/129 (47%), Gaps = 13/129 (10%)
Query: 150 TITIHGFSAVEIDYISKI---SKLSLKEVLERLKNAGLSSIPGAGAEV--LSDRVRDVIA 204
++ +HG + + + ++++ +L+ ++ ER AG + A+ + R++D++
Sbjct: 383 SVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLV- 441
Query: 205 PKKLSSDRWIEVH-----RMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGF 259
+ + W ++ M CGI T +M ++D ++ E +RVR + D + F
Sbjct: 442 -NQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVR-ITDTSSVF 499
Query: 260 RAFILWSFQ 268
+L++ +
Sbjct: 500 NTDLLYTIE 508
>pdb|1CLK|A Chain A, Crystal Structure Of Streptomyces Diastaticus No.7 Strain
M1033 Xylose Isomerase At 1.9 A Resolution With
Pseudo-I222 Space Group
Length = 387
Score = 28.9 bits (63), Expect = 1.0
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
Query: 183 GLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDV 242
GL ++ G + D R + P + S R E+ AH + FG+ D+E
Sbjct: 13 GLWTVGWQGRDPFGDATRGALDPAE-SVRRLAELG--AHGVTFHDDDLIPFGATDSER-- 67
Query: 243 VEHLQRVRDLQDETG 257
EH++R R DETG
Sbjct: 68 AEHIKRFRQALDETG 82
>pdb|1QT1|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces
Diastaticus No.7 M1033 At 1.85 A Resolution
pdb|1QT1|B Chain B, Crystal Structure Of Xylose Isomerase From Streptomyces
Diastaticus No.7 M1033 At 1.85 A Resolution
Length = 387
Score = 27.7 bits (60), Expect = 2.3
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
Query: 183 GLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDV 242
GL ++ G + D R + P + S R E+ AH + FG+ D+E
Sbjct: 13 GLWTVGWQGRDPFGDATRGALDPAE-SVRRLAELG--AHGVTFHDDDLIPFGATDSER-- 67
Query: 243 VEHLQRVRDLQDETG 257
EH++R R DETG
Sbjct: 68 AEHIKRFRQGLDETG 82
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 233 FGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEEIPS 280
+ + + ED+V++ Q+ DL+ + ++AF P T E+ S
Sbjct: 121 YDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGTYTATEMQS 168
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 26.9 bits (58), Expect = 3.9
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 153 IHGFSAVE-IDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
I + AVE + + +I + L +ER+ NAG+ S+ G +D + SD
Sbjct: 40 IDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTD---------ETGSD 90
Query: 212 RWIE---VHRMAHLC 223
W E V RM+ +C
Sbjct: 91 AWREDGLVARMSRIC 105
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 26.9 bits (58), Expect = 3.9
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 153 IHGFSAVE-IDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
I + AVE + + +I + L +ER+ NAG+ S+ G +D + SD
Sbjct: 40 IDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTD---------ETGSD 90
Query: 212 RWIE---VHRMAHLC 223
W E V RM+ +C
Sbjct: 91 AWREDGLVARMSRIC 105
>pdb|6XIA| D-Xylose Isomerase (E.C.5.3.1.5) (Glucose Isomerase)
Length = 387
Score = 26.9 bits (58), Expect = 3.9
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
Query: 183 GLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDV 242
GL ++ G + D R + P + S R E+ AH + FGS D+E
Sbjct: 13 GLWTVGWEGRDPFGDATRTALDPVE-SVRRLAELG--AHGVTFHDDDLIPFGSSDSER-- 67
Query: 243 VEHLQRVRDLQDETG 257
EH++R R D+TG
Sbjct: 68 YEHVKRFRQALDDTG 82
>pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 26.9 bits (58), Expect = 3.9
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 153 IHGFSAVE-IDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
I + AVE + + +I + L +ER+ NAG+ S+ G +D + SD
Sbjct: 40 IDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTD---------ETGSD 90
Query: 212 RWIE---VHRMAHLC 223
W E V RM+ +C
Sbjct: 91 AWREDGLVARMSRIC 105
>pdb|1E3Y|A Chain A, Death Domain From Human FaddMORT1
pdb|1E41|A Chain A, Death Domain From Human FaddMORT1
Length = 104
Score = 26.2 bits (56), Expect = 6.6
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 178 RLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVD 237
++ + + SI L++RVR+ + K + E +AHL G + M +
Sbjct: 32 KVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEK---ENATVAHLVGALRSCQMNLVA-- 86
Query: 238 NEEDVVEHLQRVRDLQDETG 257
D+V+ +Q+ RDLQ+ +G
Sbjct: 87 ---DLVQEVQQARDLQNRSG 103
>pdb|1IVM|A Chain A, Solution Structure Of Mouse Lysozyme M
Length = 130
Score = 25.8 bits (55), Expect = 8.6
Identities = 14/61 (22%), Positives = 27/61 (43%), Gaps = 7/61 (11%)
Query: 218 RMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEE 277
R + CGI +A + ++D+ +Q + + + G RA++ W N L +
Sbjct: 72 RAVNACGINCSALL-------QDDITAAIQCAKRVVRDPQGIRAWVAWRAHCQNRDLSQY 124
Query: 278 I 278
I
Sbjct: 125 I 125
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,119,253
Number of Sequences: 13198
Number of extensions: 84226
Number of successful extensions: 261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 10
length of query: 383
length of database: 2,899,336
effective HSP length: 90
effective length of query: 293
effective length of database: 1,711,516
effective search space: 501474188
effective search space used: 501474188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)