BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645284|ref|NP_207454.1| hypothetical protein
[Helicobacter pylori 26695]
         (338 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1J5V|A  Chain A, Crystal Structure Of 2-Keto-3-Deoxygluc...    30  0.39
pdb|1JIH|B  Chain B, Yeast Dna Polymerase Eta >gi|18158625|p...    27  3.3
pdb|1IHG|A  Chain A, Bovine Cyclophilin 40, Monoclinic Form ...    27  3.3
pdb|1MTZ|A  Chain A, Crystal Structure Of The Tricorn Intera...    27  4.3

>pdb|1J5V|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
           (Tm0067) From Thermotoga Maritima At 2.3 A Resolution
 pdb|1J5V|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
           (Tm0067) From Thermotoga Maritima At 2.3 A Resolution
 pdb|1J5V|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
           (Tm0067) From Thermotoga Maritima At 2.3 A Resolution
 pdb|1J5V|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
           (Tm0067) From Thermotoga Maritima At 2.3 A Resolution
          Length = 351

 Score = 30.0 bits (66), Expect = 0.39
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 181 YLMHLIENKEDVAKILHVSKASLDLKKIALN 211
           Y+  LI N+ED+ K+L +S   LDLK   LN
Sbjct: 199 YVDVLIANEEDIEKVLGISVEGLDLKTGKLN 229



>pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta
 pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta
          Length = 531

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 12/71 (16%)

Query: 102 EEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRNVGALLKLLHAYELEKDYSKALET 161
           +E I VLDL  +N            ++K I    P N G L + L A   + DY ++   
Sbjct: 314 KELIDVLDLPHEN------------SIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSN 361

Query: 162 LECLEELEVVE 172
           ++ L+  ++ E
Sbjct: 362 IDPLKTADLAE 372



>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
 pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
          Length = 370

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 4/60 (6%)

Query: 122 QKTKDTVKEILRFSPRNVGALLKLLHAYELEKDYSKALETLECLEEL----EVVEIETIK 177
           Q   D+  E L   P N  AL +    ++  K+Y +AL  L+  +E+    + ++ E +K
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349



>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
 pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
           Complex With Pck
          Length = 293

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 80  SKADVQMSIEILKGLLNRSLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEI-----LRF 134
           SK  +   +E  + L ++ L   EK+ ++        ++ Y  K +D +K +     L  
Sbjct: 75  SKFTIDYGVEEAEALRSK-LFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 133

Query: 135 SPRNVGALLKLLHAYELEKDYSKALETLECLEELEVVEIETIKNYLYLMHLIENKEDVAK 194
            P  V  + +L+   EL   Y  A++        E  E +   NY Y  HL+ +++   +
Sbjct: 134 VPLTVKEMNRLID--ELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPE 191

Query: 195 IL 196
           +L
Sbjct: 192 VL 193



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.323    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,695,285
Number of Sequences: 13198
Number of extensions: 63918
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 4
length of query: 338
length of database: 2,899,336
effective HSP length: 89
effective length of query: 249
effective length of database: 1,724,714
effective search space: 429453786
effective search space used: 429453786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)