BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645285|ref|NP_207455.1| ribonuclease H (rnhA)
[Helicobacter pylori 26695]
(143 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1RBR| Ribonuclease H (E.C.3.1.26.4) Mutant With His 6... 155 2e-39
pdb|1GOB| Ribonuclease H (E.C.3.1.26.4) Mutant With Gly 7... 153 8e-39
pdb|1RBS| Ribonuclease H (E.C.3.1.26.4) Mutant With His 6... 152 2e-38
pdb|1RBT| Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 9... 151 2e-38
pdb|1RBU| Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 9... 151 2e-38
pdb|2RN2| Ribonuclease H (E.C.3.1.26.4) >gi|443227|pdb|1R... 151 2e-38
pdb|1RBV| Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 9... 151 2e-38
pdb|1LAW| Ribonuclease H (E.C.3.1.26.4) Mutant With Val 7... 151 3e-38
pdb|1RDB| Ribonuclease H (E.C.3.1.26.4) Mutant With Glu 4... 150 5e-38
pdb|1LAV| Ribonuclease H (E.C.3.1.26.4) Mutant With Val 7... 150 5e-38
pdb|1RDA| Ribonuclease H (E.C.3.1.26.4) Mutant With Asp 1... 149 9e-38
pdb|1RDC| Ribonuclease H (E.C.3.1.26.4) Mutant With Asp 7... 149 9e-38
pdb|1KVC| E. Coli Ribonuclease Hi D134n Mutant 149 9e-38
pdb|1RNH| Selenomethionyl Ribonuclease H (E.C.3.1.26.4) 149 1e-37
pdb|1KVB| E. Coli Ribonuclease Hi D134h Mutant 149 2e-37
pdb|1KVA| E. Coli Ribonuclease Hi D134a Mutant 148 2e-37
pdb|1GOC| Ribonuclease H (E.C.3.1.26.4) Mutant With Gly 7... 148 2e-37
pdb|1GOA| Ribonuclease H (E.C.3.1.26.4) Mutant With Gly 8... 147 6e-37
pdb|1JXB|A Chain A, I53a, A Point Mutant Of The Cysteine-Fr... 145 1e-36
pdb|1F21|A Chain A, Divalent Metal Cofactor Binding In The ... 145 2e-36
pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two... 143 9e-36
pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi 142 1e-35
pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase H-A Chi... 140 4e-35
pdb|1RIL| Ribonuclease H (E.C.3.1.26.4) 140 6e-35
pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Tran... 38 4e-04
pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo >gi|1065287|pdb|1HNI|... 34 0.007
pdb|1HRH|A Chain A, Ribonuclease H Domain Of HIV-1 Reverse ... 34 0.007
pdb|1RDH|A Chain A, Hiv-1 Reverse Transcriptase (Ribonuclea... 34 0.007
pdb|1HMV|A Chain A, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49) 34 0.007
pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo 34 0.007
pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant O... 34 0.007
pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1 >gi... 34 0.007
pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Tran... 33 0.013
pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1 >gi... 33 0.013
pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Rev... 33 0.013
pdb|3HVT|A Chain A, Structure Of Immunodeficiency Virus Typ... 33 0.013
pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT H... 33 0.017
pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transc... 33 0.017
pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1... 33 0.017
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1... 33 0.017
pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Rev... 33 0.017
pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097 33 0.017
pdb|1RTH|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; ... 33 0.017
pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptas... 33 0.017
pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1... 33 0.017
pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase I... 33 0.017
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Tran... 33 0.017
pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1... 33 0.017
pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1... 33 0.017
pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex ... 32 0.028
pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv... 31 0.049
pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-... 26 1.6
pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosyla... 25 3.5
pdb|1VSH| Asv Integrase Core Domain With Zn(Ii) Cofactors... 24 5.9
pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases Fro... 24 7.8
>pdb|1RBR| Ribonuclease H (E.C.3.1.26.4) Mutant With His 62 Replaced By Pro
(H62p)
Length = 155
Score = 155 bits (391), Expect = 2e-39
Identities = 76/140 (54%), Positives = 92/140 (65%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
PC + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 PCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1GOB| Ribonuclease H (E.C.3.1.26.4) Mutant With Gly 77 Replaced By Ala
(G77a) (A77 Rnase H)
Length = 155
Score = 153 bits (386), Expect = 8e-39
Identities = 76/140 (54%), Positives = 92/140 (65%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV QAI W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQAITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1RBS| Ribonuclease H (E.C.3.1.26.4) Mutant With His 62 Replaced By Ala
(H62a)
Length = 155
Score = 152 bits (383), Expect = 2e-38
Identities = 75/140 (53%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 ACEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1RBT| Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 95 Replaced By Gly
(K95g)
Length = 155
Score = 151 bits (382), Expect = 2e-38
Identities = 75/140 (53%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADGKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1RBU| Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 95 Replaced By Asn
(K95n)
Length = 155
Score = 151 bits (382), Expect = 2e-38
Identities = 75/140 (53%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADNKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|2RN2| Ribonuclease H (E.C.3.1.26.4)
pdb|1RDD| Ribonuclease Hi (E.C.3.1.26.4) Co-Crystallized With Mg+2
pdb|1RCH| Solution Nmr Structure Of Ribonuclease Hi From Escherichia Coli, 8
Structures
Length = 155
Score = 151 bits (382), Expect = 2e-38
Identities = 75/140 (53%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1RBV| Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 95 Replaced By Ala
(K95a)
Length = 155
Score = 151 bits (382), Expect = 2e-38
Identities = 75/140 (53%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADAKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1LAW| Ribonuclease H (E.C.3.1.26.4) Mutant With Val 74 Replaced By Ile
(V74i)
Length = 155
Score = 151 bits (381), Expect = 3e-38
Identities = 74/140 (52%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQY+ Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYIRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1RDB| Ribonuclease H (E.C.3.1.26.4) Mutant With Glu 48 Replaced By Gln
(E48q)
Length = 155
Score = 150 bits (379), Expect = 5e-38
Identities = 74/140 (52%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRM+L A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMQLMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1LAV| Ribonuclease H (E.C.3.1.26.4) Mutant With Val 74 Replaced By Leu
(V74l)
Length = 155
Score = 150 bits (379), Expect = 5e-38
Identities = 74/140 (52%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQY+ Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYLRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1RDA| Ribonuclease H (E.C.3.1.26.4) Mutant With Asp 10 Replaced By Asn
(D10n)
Length = 155
Score = 149 bits (377), Expect = 9e-38
Identities = 74/140 (52%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF +GS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTNGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1RDC| Ribonuclease H (E.C.3.1.26.4) Mutant With Asp 70 Replaced By Asn
(D70n)
Length = 155
Score = 149 bits (377), Expect = 9e-38
Identities = 74/140 (52%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L ++SQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTNSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1KVC| E. Coli Ribonuclease Hi D134n Mutant
Length = 155
Score = 149 bits (377), Expect = 9e-38
Identities = 74/140 (52%), Positives = 91/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERC+ LA+ A
Sbjct: 122 KGHAGHPENERCNELARAAA 141
>pdb|1RNH| Selenomethionyl Ribonuclease H (E.C.3.1.26.4)
Length = 155
Score = 149 bits (376), Expect = 1e-37
Identities = 74/140 (52%), Positives = 90/140 (63%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNR EL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRXELXAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERCD LA+ A
Sbjct: 122 KGHAGHPENERCDELARAAA 141
>pdb|1KVB| E. Coli Ribonuclease Hi D134h Mutant
Length = 155
Score = 149 bits (375), Expect = 2e-37
Identities = 74/140 (52%), Positives = 90/140 (63%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERC LA+ A
Sbjct: 122 KGHAGHPENERCHELARAAA 141
>pdb|1KVA| E. Coli Ribonuclease Hi D134a Mutant
Length = 155
Score = 148 bits (374), Expect = 2e-37
Identities = 74/140 (52%), Positives = 90/140 (63%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENERC LA+ A
Sbjct: 122 KGHAGHPENERCAELARAAA 141
>pdb|1GOC| Ribonuclease H (E.C.3.1.26.4) Mutant With Gly 77 Replaced By Ala
And Gly 80b Inserted Between Gln 80 And Trp 81
(G77a,Ins(Q80-G)) (A77G80B RNASE H)
Length = 156
Score = 148 bits (374), Expect = 2e-37
Identities = 76/141 (53%), Positives = 92/141 (64%), Gaps = 6/141 (4%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINV-WLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVW 114
C + L +DSQYV QAI W+ NW+K+ + VKNVDLW+ H I W
Sbjct: 62 HCEVILSTDSQYVRQAITQGWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 121
Query: 115 IKGHNGHAENERCDSLAKLEA 135
+KGH GH ENERCD LA+ A
Sbjct: 122 VKGHAGHPENERCDELARAAA 142
>pdb|1GOA| Ribonuclease H (E.C.3.1.26.4) Mutant With Gly 80b Inserted Between
Gln 80 And Trp 81 (Ins(Q80-G) (G80b Rnase H)
Length = 156
Score = 147 bits (370), Expect = 6e-37
Identities = 75/141 (53%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINV-WLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVW 114
C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W
Sbjct: 62 HCEVILSTDSQYVRQGITQGWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 121
Query: 115 IKGHNGHAENERCDSLAKLEA 135
+KGH GH ENERCD LA+ A
Sbjct: 122 VKGHAGHPENERCDELARAAA 142
>pdb|1JXB|A Chain A, I53a, A Point Mutant Of The Cysteine-Free Variant Of E.
Coli Rnase Hi
Length = 155
Score = 145 bits (367), Expect = 1e-36
Identities = 73/140 (52%), Positives = 90/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS+LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAAVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
+ L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENER D LA+ A
Sbjct: 122 KGHAGHPENERADELARAAA 141
>pdb|1F21|A Chain A, Divalent Metal Cofactor Binding In The Kinetic Folding
Trajectory Of E. Coli Ribonuclease Hi
Length = 155
Score = 145 bits (366), Expect = 2e-36
Identities = 73/140 (52%), Positives = 90/140 (64%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS+LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
+ L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENER D LA+ A
Sbjct: 122 KGHAGHPENERADELARAAA 141
>pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two Mn2+ Ions Bound In
The The Active Site
Length = 155
Score = 143 bits (360), Expect = 9e-36
Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS+LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
+ L +DSQYV Q I W+ NW+ + + VKNVDLW+ H I W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENER D LA+ A
Sbjct: 122 KGHAGHPENERADELARAAA 141
>pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi
Length = 155
Score = 142 bits (358), Expect = 1e-35
Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 5/140 (3%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF GS+LGNPGPGGY AILRY+ +EKT S G TTNNRMEL A AL+ LK
Sbjct: 2 LKQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61
Query: 61 PCRITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
+ L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 116 KGHNGHAENERCDSLAKLEA 135
KGH GH ENER D LA+ A
Sbjct: 122 KGHAGHPENERADELARAAA 141
>pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|D Chain D, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|B Chain B, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|C Chain C, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
Length = 156
Score = 140 bits (354), Expect = 4e-35
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Query: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKR 60
++++EIF DGS+LGNPGPGGY AILRY+ +EKT S G TTNNRMEL+A E LK LK
Sbjct: 2 LKQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKE 61
Query: 61 PCRITLYSDSQYVCQAINV-WLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVW 114
P + LY+DS Y+ +A WL W+K+ + VKN DLW+ L H + +
Sbjct: 62 PAEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHF 121
Query: 115 IKGHNGHAENERCDSLAKLEA 135
+KGH GH ENER D LA+ A
Sbjct: 122 VKGHAGHPENERADELARAAA 142
>pdb|1RIL| Ribonuclease H (E.C.3.1.26.4)
Length = 166
Score = 140 bits (353), Expect = 6e-35
Identities = 70/146 (47%), Positives = 93/146 (62%), Gaps = 6/146 (4%)
Query: 2 QEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRP 61
+ + +F DG+ LGNPGPGG+AA+LR+ EK +SGGE TTNNRMEL+A E LK LK P
Sbjct: 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP 66
Query: 62 CRITLYSDSQYVCQAINV-WLANWQKKNF-----SKVKNVDLWKEFLEVSKGHSIVAVWI 115
C + LY+DS Y+ +A WL W+K+ + VKN DLW+ L H + ++
Sbjct: 67 CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFV 126
Query: 116 KGHNGHAENERCDSLAKLEAQKRVKT 141
KGH GH ENER D A+ +AQ + KT
Sbjct: 127 KGHTGHPENERVDREARRQAQSQAKT 152
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 38.1 bits (87), Expect = 4e-04
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 7 FCDGSS--LGNPGPGGYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRI 64
+ DGS G GY R KDK K + E TTN + EL A A+ + ++
Sbjct: 440 YTDGSCNRQSKEGKAGYVTD-RGKDKVKKL----EQTTNQQAELEAF--AMALTDSGPKV 492
Query: 65 TLYSDSQYVCQAINVWLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAEN 124
+ DSQYV + A+ ++ SK+ N + E+ K +I W+ H G N
Sbjct: 493 NIIVDSQYVMGIV----ASQPTESESKIVN----QIIEEMIKKEAIYVAWVPAHKGIGGN 544
Query: 125 ERCDSL 130
+ D L
Sbjct: 545 QEVDHL 550
>pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo
pdb|1HNI|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
(Hiv-1rt) (E.C.2.7.7.49) Mutant With Cys 280 Replaced By
Ser (C280s)
pdb|1HNV|A Chain A, Hiv-1 Reverse Transcriptase (Hiv-1 Rt) (E.C.2.7.7.49)
Mutant With Cys 280 Replaced By Ser (C280s)
pdb|2HMI|A Chain A, Hiv-1 Reverse Transcriptase Complexed With A
Double-Stranded Dna And Fab28
Length = 558
Score = 33.9 bits (76), Expect = 0.007
Identities = 29/118 (24%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1HRH|A Chain A, Ribonuclease H Domain Of HIV-1 Reverse Transcriptase
pdb|1HRH|B Chain B, Ribonuclease H Domain Of HIV-1 Reverse Transcriptase
Length = 136
Score = 33.9 bits (76), Expect = 0.007
Identities = 29/118 (24%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 27 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 79
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 80 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 132
>pdb|1RDH|A Chain A, Hiv-1 Reverse Transcriptase (Ribonuclease H Domain)
(E.C.2.7.7.49)
pdb|1RDH|B Chain B, Hiv-1 Reverse Transcriptase (Ribonuclease H Domain)
(E.C.2.7.7.49)
Length = 146
Score = 33.9 bits (76), Expect = 0.007
Identities = 29/118 (24%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 39 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 91
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 92 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 144
>pdb|1HMV|A Chain A, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49)
Length = 560
Score = 33.9 bits (76), Expect = 0.007
Identities = 29/118 (24%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 558
Score = 33.9 bits (76), Expect = 0.007
Identities = 29/118 (24%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
pdb|1QE1|A Chain A, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
Length = 558
Score = 33.9 bits (76), Expect = 0.007
Identities = 29/118 (24%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
Length = 560
Score = 33.9 bits (76), Expect = 0.007
Identities = 29/118 (24%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 553
Score = 33.1 bits (74), Expect = 0.013
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSL 130
A K V + ++ K + W+ H G NE+ D L
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKL 551
>pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1BQM|A Chain A, Hiv-1 RtHBY 097
Length = 556
Score = 33.1 bits (74), Expect = 0.013
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSL 130
A K V + ++ K + W+ H G NE+ D L
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKL 551
>pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|D Chain D, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|G Chain G, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|J Chain J, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 554
Score = 33.1 bits (74), Expect = 0.013
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSL 130
A K V + ++ K + W+ H G NE+ D L
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKL 551
>pdb|3HVT|A Chain A, Structure Of Immunodeficiency Virus Type 1 Reverse
Transcriptase Heterodimer
Length = 556
Score = 33.1 bits (74), Expect = 0.013
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSL 130
A K V + ++ K + W+ H G NE+ D L
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKL 551
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(Rtmq+m184v: M41lD67NK70RM184VT215Y) IN COMPLEX WITH
Nevirapine
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 558
Score = 32.7 bits (73), Expect = 0.017
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G N++ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNQQVDKLVSAGIRK 558
>pdb|1RTH|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1RTJ|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1RTI|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1VRU|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
pdb|1VRT|A Chain A, Hiv-1 Reverse Transcriptase Mol_id: 1; Molecule: Hiv-1
Reverse Transcriptase; Chain: A, B; Synonym: Hiv-1 Rt;
Ec: 2.7.7.49; Engineered: Yes
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + +L+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTQLQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + +L+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTQLQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A K V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 32.7 bits (73), Expect = 0.017
Identities = 27/118 (22%), Positives = 51/118 (42%), Gaps = 12/118 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + + ++K ++ + TTN + EL+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQK 137
A + V + ++ K + W+ H G NE+ D L +K
Sbjct: 506 IQAQPDQSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 558
>pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
Length = 557
Score = 32.0 bits (71), Expect = 0.028
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + TTN + +L+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTN--TTNQKTQLQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSL 130
A K V + ++ K + W+ H G NE+ D L
Sbjct: 506 IQAQPDKSESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKL 551
>pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 31.2 bits (69), Expect = 0.049
Identities = 26/111 (23%), Positives = 48/111 (42%), Gaps = 12/111 (10%)
Query: 20 GYAAILRYKDKEKTISGGEEFTTNNRMELRALNEALKILKRPCRITLYSDSQYVCQAINV 79
G A + K ++K + + TTN + +L+A+ AL+ + + +DSQY A+ +
Sbjct: 453 GKAGYVTNKGRQKVVPLTD--TTNQKTQLQAIYLALQ--DSGLEVNIVTDSQY---ALGI 505
Query: 80 WLANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSL 130
A + V + ++ K + W+ H G NE+ D L
Sbjct: 506 IQAQPDESESELVNQI-----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKL 551
>pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-Alanine And A
Partially Occupied Biatomic Species
pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes At
Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex With
Two Anthranylate Molecules
Length = 363
Score = 26.2 bits (56), Expect = 1.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 82 ANWQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENE 125
A W++ F K W E V GH A+W+KG A+NE
Sbjct: 70 AKWEESTFKK------WVEL--VPTGH---AMWLKGTRRFAQNE 102
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 25.0 bits (53), Expect = 3.5
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 9/53 (16%)
Query: 84 WQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENERCDSLAKLEAQ 136
++K+N ++ WKE+L+ S+ IV + EN C + L+AQ
Sbjct: 118 FKKENLLTAESEKEWKEWLKTSQYKPIVNI---------ENHDCIGMIALDAQ 161
>pdb|1VSH| Asv Integrase Core Domain With Zn(Ii) Cofactors
pdb|1VSJ| Asv Integrase Core Domain With Cd(Ii) Cofactors
pdb|1VSI| Asv Integrase Core Domain With Ca(Ii) Cofactor
Length = 152
Score = 24.3 bits (51), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 54 ALKILKRPCRITLYSDSQYVCQAINVWLANW 84
A+ +L RP I + S + ++ WLA W
Sbjct: 59 AIAVLGRPKAIKTDNGSXFTSKSTREWLARW 89
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 23.9 bits (50), Expect = 7.8
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 84 WQKKNFSKVKNVDLWKEFLEVSKGHSIVAVWIKGHNGHAENER 126
WQ + +V+++DL +EVS H I++ K N E R
Sbjct: 49 WQTLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 91
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 933,992
Number of Sequences: 13198
Number of extensions: 36155
Number of successful extensions: 168
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 55
length of query: 143
length of database: 2,899,336
effective HSP length: 79
effective length of query: 64
effective length of database: 1,856,694
effective search space: 118828416
effective search space used: 118828416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)