BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645288|ref|NP_207458.1| hypothetical protein
[Helicobacter pylori 26695]
(171 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-R... 28 0.43
pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus ... 28 0.43
pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoen... 28 0.43
pdb|1EDG| Single Crystal Structure Determination Of The C... 28 0.73
pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase... 27 0.96
pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenas... 27 1.2
pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophil... 26 2.8
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal... 25 3.6
pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex ... 25 3.6
pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea ... 25 3.6
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinosit... 25 4.7
pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinosit... 25 4.7
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 25 6.2
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 25 6.2
>pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
pdb|1I6V|A Chain A, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 314
Score = 28.5 bits (62), Expect = 0.43
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 24/106 (22%)
Query: 64 VLVPDNVISLLAENARKAFEARLRAELE---------RDIITQAPID--FEDVREVSLQL 112
++ PD I+ L E + E R+ + +D I P+D F VR V+ Q+
Sbjct: 122 IMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQV 181
Query: 113 ----------LENLRQK---DGNLPNINTLNFVKQIKKEHPNLFFN 145
L+ L + DG++ + LN I KEH N F N
Sbjct: 182 EDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFAN 227
>pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
pdb|1HQM|A Chain A, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 313
Score = 28.5 bits (62), Expect = 0.43
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 24/106 (22%)
Query: 64 VLVPDNVISLLAENARKAFEARLRAELE---------RDIITQAPID--FEDVREVSLQL 112
++ PD I+ L E + E R+ + +D I P+D F VR V+ Q+
Sbjct: 121 IMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQV 180
Query: 113 ----------LENLRQK---DGNLPNINTLNFVKQIKKEHPNLFFN 145
L+ L + DG++ + LN I KEH N F N
Sbjct: 181 EDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFAN 226
>pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|B Chain B, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|J Chain J, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|K Chain K, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|A Chain A, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1L9Z|B Chain B, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 314
Score = 28.5 bits (62), Expect = 0.43
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 24/106 (22%)
Query: 64 VLVPDNVISLLAENARKAFEARLRAELE---------RDIITQAPID--FEDVREVSLQL 112
++ PD I+ L E + E R+ + +D I P+D F VR V+ Q+
Sbjct: 122 IMNPDLHIATLEEGGKLYMEVRVDRGVGYVPAERHGIKDRINAIPVDAIFSPVRRVAFQV 181
Query: 113 ----------LENLRQK---DGNLPNINTLNFVKQIKKEHPNLFFN 145
L+ L + DG++ + LN I KEH N F N
Sbjct: 182 EDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFAN 227
>pdb|1EDG| Single Crystal Structure Determination Of The Catalytic Domain Of
Celcca Carried Out At 15 Degree C
Length = 380
Score = 27.7 bits (60), Expect = 0.73
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 112 LLENLRQKDGNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFEN 162
L+ NL+ N+PN + +NFVK ++ L +N N F FN N N
Sbjct: 6 LIPNLQIPQKNIPNNDGMNFVKGLR-----LGWNLGNTF--DAFNGTNITN 49
>pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|B Chain B, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|K Chain K, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|L Chain L, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 315
Score = 27.3 bits (59), Expect = 0.96
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 24/106 (22%)
Query: 64 VLVPDNVISLLAENARKAFEARLRAELE---------RDIITQAPID--FEDVREVSLQL 112
++ PD I+ L E R E R+ + +D I P+D F VR V+ Q+
Sbjct: 122 IMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQV 181
Query: 113 ----------LENLRQK---DGNLPNINTLNFVKQIKKEHPNLFFN 145
L+ L + DG++ + LN +I +EH F N
Sbjct: 182 EDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSN 227
>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf
Whitefly
Length = 352
Score = 26.9 bits (58), Expect = 1.2
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 67 PDNVISLLAENARKAF-----EARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKDG 121
P ++S+LA A AF + R E+ ++ + + +E ++E +R G
Sbjct: 179 PIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 238
Query: 122 NLPNI 126
+LPN+
Sbjct: 239 DLPNV 243
>pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
Length = 274
Score = 25.8 bits (55), Expect = 2.8
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 20 SLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVPDNVISLLAENAR 79
S++TQK L N++ + + + ++ + F +++ +KNY+L D L +
Sbjct: 96 SVSTQKGNMVLTVKDMNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSM 155
Query: 80 KAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKDGNLPNINTLNFVKQIKKEH 139
+ +D++ +++ L L + P F++ I KEH
Sbjct: 156 GN--------------PHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEH 201
Query: 140 PNL 142
L
Sbjct: 202 IKL 204
>pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 25.4 bits (54), Expect = 3.6
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 42 LEKGAFKKNEAYFISDEEDKNYVLVP 67
+EKG +++A +SD+E N++ VP
Sbjct: 172 IEKGLIDESKAATLSDQEILNFLFVP 197
>pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex With Tnp-Atp
Length = 191
Score = 25.4 bits (54), Expect = 3.6
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 42 LEKGAFKKNEAYFISDEEDKNYVLVP 67
+EKG +++A +SD+E N++ VP
Sbjct: 115 IEKGLIDESKAATLSDQEILNFLFVP 140
>pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I59|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I5A|A Chain A, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5B|A Chain A, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5B|B Chain B, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5C|B Chain B, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5C|A Chain A, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5A|B Chain B, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I59|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I58|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
Length = 189
Score = 25.4 bits (54), Expect = 3.6
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 42 LEKGAFKKNEAYFISDEEDKNYVLVP 67
+EKG +++A +SD+E N++ VP
Sbjct: 113 IEKGLIDESKAATLSDQEILNFLFVP 138
>pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
Length = 961
Score = 25.0 bits (53), Expect = 4.7
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 93 DIITQAPIDFEDVR----EVSLQLLENLRQKDGNLPNIN 127
D++ + ID + + +VS Q++ L+QK NL N+N
Sbjct: 599 DMLQKVTIDIKSLSAEKYDVSSQVISQLKQKLENLQNLN 637
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 25.0 bits (53), Expect = 4.7
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 93 DIITQAPIDFEDVR----EVSLQLLENLRQKDGNLPNIN 127
D++ + ID + + +VS Q++ L+QK NL N+N
Sbjct: 599 DMLQKVTIDIKSLSAEKYDVSSQVISQLKQKLENLQNLN 637
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 24.6 bits (52), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 102 FEDVREVSLQLLE---NLRQKDGNLPNINTLNFVKQIKKEHPNL 142
FE+ EV L ++ D +P ++ L +KQIK+ HP L
Sbjct: 33 FENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPML 76
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 24.6 bits (52), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 102 FEDVREVSLQLLE---NLRQKDGNLPNINTLNFVKQIKKEHPNL 142
FE+ EV L ++ D +P ++ L +KQIK+ HP L
Sbjct: 33 FENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPML 76
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 926,270
Number of Sequences: 13198
Number of extensions: 36309
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 15
length of query: 171
length of database: 2,899,336
effective HSP length: 82
effective length of query: 89
effective length of database: 1,817,100
effective search space: 161721900
effective search space used: 161721900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)