BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645291|ref|NP_207461.1| hypothetical protein
[Helicobacter pylori 26695]
(85 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidas... 26 0.66
pdb|1A0Q|L Chain L, 29g11 Complexed With Phenyl [1-(1-N-Suc... 25 1.9
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 23 5.6
pdb|1A5F|L Chain L, Fab Fragment Of A Monoclonal Anti-E-Sel... 23 7.3
pdb|1NLD|L Chain L, Fab Fragment Of A Neutralizing Antibody... 23 7.3
pdb|1FJ1|A Chain A, Lyme Disease Antigen Ospa In Complex Wi... 23 7.3
pdb|1IGF|L Chain L, Igg1 Fab' Fragment (B13i2) >gi|230033|p... 23 7.3
pdb|1K6Q|L Chain L, Crystal Structure Of Antibody Fab Fragm... 23 7.3
pdb|1FIG|L Chain L, Immunoglobulin G1 (Kappa Light Chain) F... 23 7.3
pdb|3HFM|L Chain L, IgG1 Fab Fragment (HyHEL-10) And Lysozy... 23 7.3
pdb|2HRP|L Chain L, Antigen-Antibody Complex >gi|2780905|pd... 23 7.3
pdb|1LO4|L Chain L, Retro-Diels-Alderase Catalytic Antibody... 23 7.3
pdb|1AXT|L Chain L, Immune Versus Natural Selection: Antibo... 23 7.3
pdb|1GHF|L Chain L, Anti-Anti-Idiotype Gh1002 Fab Fragment 23 7.3
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti... 23 7.3
pdb|1CT8|A Chain A, Catalytic Antibody 7c8 Complex >gi|6573... 23 7.3
pdb|1IKF|L Chain L, Immunoglobulin Igg1-Kappa Antibody Frag... 23 7.3
pdb|6FAB|L Chain L, Antigen-Binding Fragment Of The Murine ... 23 7.3
pdb|1FDL|L Chain L, IgG1 Fab Fragment (Anti-Lysozyme Antibo... 23 7.3
pdb|1QFU|L Chain L, Influenza Virus Hemagglutinin Complexed... 23 7.3
pdb|1CR9|L Chain L, Crystal Structure Of The Anti-Prion Fab... 23 7.3
pdb|1JFQ|L Chain L, Antigen-Binding Fragment Of The Murine ... 23 7.3
pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Comp... 23 7.3
pdb|12E8|L Chain L, 2e8 Fab Fragment >gi|3401956|pdb|12E8|M... 23 7.3
pdb|1KEN|L Chain L, Influenza Virus Hemagglutinin Complexed... 23 7.3
pdb|1IGY|A Chain A, Structure Of Immunoglobulin >gi|3114313... 23 7.3
pdb|1YEJ|L Chain L, Catalytic Antibody Complex >gi|4389133|... 23 7.3
pdb|1IGT|A Chain A, Structure Of Immunoglobulin >gi|2392372... 23 7.3
pdb|1CF8|L Chain L, Convergence Of Catalytic Antibody And T... 23 7.3
pdb|1AFV|L Chain L, Hiv-1 Capsid Protein (P24) Complex With... 23 7.3
pdb|25C8|L Chain L, Catalytic Antibody 5c8, Fab-Hapten Comp... 23 7.3
pdb|1FGN|L Chain L, Monoclonal Murine Antibody 5g9 - Anti-H... 23 7.3
pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Frag... 23 7.3
pdb|1IGJ|A Chain A, Fab (Igg2a,Kappa) Fragment (26-10) Comp... 23 7.3
pdb|1JGU|L Chain L, Structural Basis For Disfavored Elimina... 23 7.3
pdb|1CL7|L Chain L, Anti Hiv1 Protease Fab 23 7.3
pdb|1F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 2... 23 7.3
pdb|1F8T|L Chain L, Fab (Lnkb-2) Of Monoclonal Antibody, Cr... 23 7.3
pdb|1AE6|L Chain L, Igg-Fab Fragment Of Mouse Monoclonal An... 23 7.3
pdb|1OSP|L Chain L, Crystal Structure Of Outer Surface Prot... 23 7.3
pdb|1C12|A Chain A, Insight In Odorant Perception: The Crys... 23 7.3
pdb|1TET|L Chain L, Igg1 Monoclonal Fab Fragment (Te33) Com... 23 7.3
pdb|15C8|L Chain L, Catalytic Antibody 5c8, Free Fab 23 7.3
pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab... 23 7.3
pdb|2H1P|L Chain L, The Three-Dimensional Structures Of A P... 23 7.3
pdb|1C1E|L Chain L, Crystal Structure Of A Diels-Alderase C... 23 7.3
pdb|1KCU|L Chain L, Crystal Structure Of Antibody Pc287 >gi... 23 7.3
pdb|1IQW|L Chain L, Crystal Structure Of The Fab Fragment O... 23 7.3
pdb|1FNS|L Chain L, Crystal Structure Of The Von Willebrand... 23 7.3
pdb|1BLN|A Chain A, Anti-P-Glycoprotein Fab Mrk-16 >gi|3891... 23 7.3
pdb|1KFA|L Chain L, Crystal Structure Of Fab Fragment Compl... 23 7.3
pdb|1YED|A Chain A, Structure Of A Catalytic Antibody Igg2a... 23 7.3
pdb|1EHL|L Chain L, 64m-2 Antibody Fab Complexed With D(5ht... 23 7.3
pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment O... 23 7.3
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Anti... 23 7.3
pdb|1A6T|A Chain A, Fab Fragment Of Mab1-Ia Monoclonal Anti... 23 7.3
pdb|1IL1|B Chain B, Crystal Structure Of G3-519, An Anti-Hi... 23 7.3
pdb|1L7S|L Chain L, Crystal Structure Analysis Of The Anti-... 23 7.3
pdb|1F11|A Chain A, F124 Fab Fragment From A Monoclonal Ant... 23 7.3
pdb|1LO0|X Chain X, Catalytic Retro-Diels-Alderase Transiti... 23 7.3
pdb|1IAI|L Chain L, Idiotype-Anti-Idiotype Fab Complex 23 7.3
pdb|1CIC|A Chain A, Idiotope-Anti-Idiotope Fab-Fab Complex;... 23 7.3
pdb|1NSN|L Chain L, Immunoglobulin, Staphylococcal Nuclease... 23 7.3
pdb|1AY1|L Chain L, Anti Taq Fab Tp7 >gi|3891940|pdb|1BGX|L... 23 7.3
pdb|1BAF|L Chain L, Fab Fragment Of Murine Monoclonal Antib... 23 7.3
pdb|1BQL|L Chain L, Hyhel-5 Fab Complexed With Bobwhite Qua... 23 7.3
pdb|1PLG|L Chain L, Mol_id: 1; Molecule: Igg2akappa; Chain:... 23 7.3
pdb|1RMF|L Chain L, R6.5 Murine Monoclonal Antibody Fab Fra... 23 7.3
pdb|1IBG|L Chain L, Igg Fab (Igg2b, Kappa) Fragment (40-50 ... 23 7.3
pdb|1MF2|L Chain L, Anti Hiv1 Protease Fab Complex >gi|2780... 23 7.3
pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Comp... 23 7.3
pdb|1SBS|L Chain L, Crystal Structure Of An Anti-Hcg Fab 23 7.3
pdb|1A3L|L Chain L, Catalysis Of A Disfavored Reaction: An ... 23 7.3
pdb|1KEL|L Chain L, Catalytic Antibody 28b4 Fab Fragment Co... 23 7.3
pdb|1EMT|L Chain L, Fab Antibody Fragment Of An C60 Antiful... 23 7.3
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Ag... 23 7.3
pdb|1OAK|L Chain L, Crystal Structure Of The Von Willebrand... 23 7.3
pdb|1GGI|L Chain L, Igg2a Fab Fragment (50.1) Complex With ... 23 7.3
pdb|1NBV|L Chain L, Fab (Bv04-01) Autoantibody Binding Sing... 23 7.3
pdb|2FBJ|L Chain L, IgA Fab Fragment (J539) (Galactan-Binding) 23 7.3
pdb|1MAM|L Chain L, Antigen-Binding Fragment (Fab) (Igg2b, ... 23 7.3
pdb|1E4X|L Chain L, Crossreactive Binding Of A Circularized... 23 7.3
pdb|1GPO|M Chain M, Crystal Structure Of The Rationally Des... 23 7.3
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex... 23 7.3
pdb|1E6J|L Chain L, Crystal Structure Of Hiv-1 Capsid Prote... 23 7.3
pdb|1R24|A Chain A, Fab From Murine Igg3 Kappa >gi|6573655|... 23 7.3
pdb|1FE8|L Chain L, Crystal Structure Of The Von Willebrand... 23 7.3
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In H... 23 7.3
pdb|1IFH|L Chain L, Igg2a Fab Fragment (Fab 179) COMPLEX WI... 23 7.3
pdb|2PCP|A Chain A, Antibody Fab Complexed With Phencyclidi... 23 7.3
pdb|1NCB|L Chain L, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Mu... 23 7.3
pdb|1CLZ|L Chain L, Igg Fab (Igg3, Kappa) Fragment (Mbr96) ... 23 7.3
pdb|1A3R|L Chain L, Fab Fragment (Antibody 8f5) Complexed W... 23 7.3
pdb|1FSK|B Chain B, Complex Formation Between A Fab Fragmen... 23 7.3
pdb|1MCP|L Chain L, Immunoglobulin Fab Fragment (McPC603) >... 23 7.3
pdb|1JRH|L Chain L, Complex (AntibodyANTIGEN) 23 7.3
pdb|1AIF|A Chain A, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab ... 23 7.3
pdb|1KNO|A Chain A, Mol_id: 1; Molecule: Igg2a Fab Fragment... 23 7.3
pdb|1AI1|L Chain L, Hiv-1 V3 Loop Mimic >gi|575989|pdb|1ACY... 23 7.3
pdb|1FBI|P Chain P, Fab Fragment Of The Monoclonal Antibody... 23 7.3
pdb|2GFB|A Chain A, Igg2a Fab Fragment (Cnj206) >gi|640173|... 23 7.3
pdb|3F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 1... 23 7.3
pdb|1YEC|L Chain L, Structure Of A Catalytic Antibody Igg2a... 23 7.3
pdb|1HYX|L Chain L, High Resolution Crystal Structure Of Th... 23 7.3
pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainF... 23 7.3
pdb|1F3D|J Chain J, Catalytic Antibody 4b2 In Complex With ... 23 7.3
pdb|1KCR|L Chain L, Crystal Structure Of Antibody Pc283 In ... 23 7.3
pdb|1DQD|L Chain L, Crystal Structure Of Fab Hgr-2 F6, A Co... 23 7.3
pdb|1FOR|L Chain L, Igg2a Fab Fragment (Fab17-Ia) (Orthorho... 23 7.3
pdb|1E6O|L Chain L, Crystal Structure Of Fab13b5 Against Hi... 23 7.3
pdb|1I9J|L Chain L, Testosterone Complex Structure Of The R... 23 7.3
pdb|1MNU|L Chain L, Unliganded Bactericidal Antibody Agains... 23 7.3
pdb|1YEE|L Chain L, Structure Of A Catalytic Antibody, Igg2... 23 7.3
pdb|32C2|A Chain A, Structure Of An Activity Suppressing Fa... 23 7.3
pdb|1FAI|L Chain L, Fab Fragment From A Monoclonal Anti-Ars... 23 7.3
pdb|1H3P|L Chain L, Structural Characterisation Of A Monocl... 23 7.3
pdb|2CGR|L Chain L, Igg2b (Kappa) Fab Fragment Complexed Wi... 23 7.3
pdb|1PSK|L Chain L, The Crystal Structure Of An Fab Fragmen... 23 7.3
pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex;... 23 7.3
pdb|1GGB|L Chain L, Igg2a Fab Fragment (50.1) >gi|442935|pd... 23 7.3
pdb|1DBB|L Chain L, Fab' Fragment Of The Db3 Anti-Steroid M... 23 7.3
pdb|1EO8|L Chain L, Influenza Virus Hemagglutinin Complexed... 23 7.3
pdb|1FLR|L Chain L, 4-4-20 Fab Fragment 23 7.3
pdb|1FL3|B Chain B, Crystal Structure Of The Blue Fluoresce... 23 7.3
pdb|1HIL|A Chain A, Igg2a Fab Fragment (Fab 179) >gi|494156... 23 7.3
pdb|1CLO|L Chain L, Anti-Carcinoembryonic Antigen Monoclona... 23 7.3
pdb|4FAB|L Chain L, 4-4-20 (IgG2akappa) Fab Fragment - Fluo... 23 7.3
pdb|1FRG|L Chain L, Igg2a Fab Fragment (Fab 269) COMPLEXED ... 23 7.3
pdb|1QKZ|L Chain L, Fab Fragment (Mn14c11.6) In Complex Wit... 22 9.6
pdb|1EAP|A Chain A, 17e8 Complexed With Phenyl [1-(1-N-Succ... 22 9.6
pdb|1EJO|L Chain L, Fab Fragment Of Neutralising Monoclonal... 22 9.6
pdb|1MRF|L Chain L, Igg Jel 103 Fab Fragment Complexed With... 22 9.6
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Length = 475
Score = 26.2 bits (56), Expect = 0.66
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 20 LRHKGILFEKISKQFLQEHDSANEYESIDLW 50
L + + F KI++Q LQE + EYE ++W
Sbjct: 104 LMSETVRFPKITEQELQEQKLSAEYEIDEVW 134
>pdb|1A0Q|L Chain L, 29g11 Complexed With Phenyl [1-(1-N-Succinylamino)pentyl]
Phosphonate
Length = 212
Score = 24.6 bits (52), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + S D+ WK+ G+ER G+
Sbjct: 136 NNFYSKDINVKWKIDGSERQNGV 158
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 23.1 bits (48), Expect = 5.6
Identities = 16/62 (25%), Positives = 29/62 (45%), Gaps = 8/62 (12%)
Query: 18 PNLRHKGILFEKISKQFLQEHDSANEYESID--LWYDWK------LRGNERDKGIDIVIT 69
P L HK K++ + + H SA +Y +I ++ D + +D+GID++
Sbjct: 313 PALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAA 372
Query: 70 TF 71
F
Sbjct: 373 KF 374
>pdb|1A5F|L Chain L, Fab Fragment Of A Monoclonal Anti-E-Selectin Antibody
Length = 220
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|1NLD|L Chain L, Fab Fragment Of A Neutralizing Antibody Directed Against
An Epitope Of Gp41 From Hiv-1
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1FJ1|A Chain A, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|C Chain C, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1IGF|L Chain L, Igg1 Fab' Fragment (B13i2)
pdb|1IGF|M Chain M, Igg1 Fab' Fragment (B13i2)
pdb|2IGF|L Chain L, Igg1 Fab' Fragment (B13i2) Complex With Peptide (Residues
69-87 Of Myohemerythrin)
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1K6Q|L Chain L, Crystal Structure Of Antibody Fab Fragment D3
Length = 210
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1FIG|L Chain L, Immunoglobulin G1 (Kappa Light Chain) Fab' Fragment
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 138 NNFYPKDINVKWKIDGSERQNGV 160
>pdb|3HFM|L Chain L, IgG1 Fab Fragment (HyHEL-10) And Lysozyme (E.C.3.2.1.17)
Complex
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|2HRP|L Chain L, Antigen-Antibody Complex
pdb|2HRP|M Chain M, Antigen-Antibody Complex
Length = 218
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1LO4|L Chain L, Retro-Diels-Alderase Catalytic Antibody 9d9
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1AXT|L Chain L, Immune Versus Natural Selection: Antibody Aldolases With
The Rates Of Natural Enzymes
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1GHF|L Chain L, Anti-Anti-Idiotype Gh1002 Fab Fragment
Length = 211
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1CT8|A Chain A, Catalytic Antibody 7c8 Complex
pdb|1CT8|C Chain C, Catalytic Antibody 7c8 Complex
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1IKF|L Chain L, Immunoglobulin Igg1-Kappa Antibody Fragment Fab Complexed
With Cyclosporin
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|6FAB|L Chain L, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1FDL|L Chain L, IgG1 Fab Fragment (Anti-Lysozyme Antibody D1.3, Kappa) -
Lysozyme (E.C.3.2.1.17) Complex
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1QFU|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1CR9|L Chain L, Crystal Structure Of The Anti-Prion Fab 3f4
pdb|1CU4|L Chain L, Crystal Structure Of The Anti-Prion Fab 3f4 In Complex
With Its Peptide Epitope
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1JFQ|L Chain L, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|12E8|L Chain L, 2e8 Fab Fragment
pdb|12E8|M Chain M, 2e8 Fab Fragment
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1KEN|L Chain L, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|U Chain U, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 138 NNFYPKDINVKWKIDGSERQNGV 160
>pdb|1IGY|A Chain A, Structure Of Immunoglobulin
pdb|1IGY|C Chain C, Structure Of Immunoglobulin
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1YEJ|L Chain L, Catalytic Antibody Complex
pdb|1YEI|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1KN2|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1KN4|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1YEK|L Chain L, Catalytic Antibody D2.3 Complex
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1IGT|A Chain A, Structure Of Immunoglobulin
pdb|1IGT|C Chain C, Structure Of Immunoglobulin
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1CF8|L Chain L, Convergence Of Catalytic Antibody And Terpene Cyclase
Mechanisms: Polyene Cyclization Directed By
Carbocation-Pi Interactions
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 138 NNFYPKDINVKWKIDGSERQNGV 160
>pdb|1AFV|L Chain L, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|M Chain M, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|25C8|L Chain L, Catalytic Antibody 5c8, Fab-Hapten Complex
pdb|35C8|L Chain L, Catalytic Antibody 5c8, Fab-Inhibitor Complex
Length = 212
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 138 NNFYPKDINVKWKIDGSERQNGV 160
>pdb|1FGN|L Chain L, Monoclonal Murine Antibody 5g9 - Anti-Human Tissue Factor
pdb|1AHW|A Chain A, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
pdb|1AHW|D Chain D, A Complex Of Extracellular Domain Of Tissue Factor With An
Inhibitory Fab (5g9)
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1IGJ|A Chain A, Fab (Igg2a,Kappa) Fragment (26-10) Complex With Digoxin
pdb|1IGJ|C Chain C, Fab (Igg2a,Kappa) Fragment (26-10) Complex With Digoxin
pdb|1IGI|L Chain L, Fab (Igg2a,Kappa) Fragment (26-10)
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1JGU|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
pdb|1JGV|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 220
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|1CL7|L Chain L, Anti Hiv1 Protease Fab
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 24-Residue Peptide
(Residues 308-333 Of Hiv-1 Gp120 (Mn Isolate) With Ala
To Aib Substitution At Position 323
pdb|2F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120) (Mn
Isolate)
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1F8T|L Chain L, Fab (Lnkb-2) Of Monoclonal Antibody, Crystal Structure
pdb|1F90|L Chain L, Fab Fragment Of Monoclonal Antibody (Lnkb-2) Against Human
Interleukin-2 In Complex With Antigenic Peptide
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1AE6|L Chain L, Igg-Fab Fragment Of Mouse Monoclonal Antibody Ctm01
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1OSP|L Chain L, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1C12|A Chain A, Insight In Odorant Perception: The Crystal Structure And
Binding Characteristics Of Antibody Fragments Directed
Against The Musk Odorant Traseolide
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1TET|L Chain L, Igg1 Monoclonal Fab Fragment (Te33) Complex With Cholera
Toxin Peptide 3 (Ctp3)
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|15C8|L Chain L, Catalytic Antibody 5c8, Free Fab
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 138 NNFYPKDINVKWKIDGSERQNGV 160
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment Complexed
With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|2H1P|L Chain L, The Three-Dimensional Structures Of A Polysaccharide
Binding Antibody To Cryptococcus Neoformans And Its
Complex With A Peptide From A Phage Display Library:
Implications For The Identification Of Peptide Mimotopes
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1C1E|L Chain L, Crystal Structure Of A Diels-Alderase Catalytic Antibody
1e9 In Complex With Its Hapten
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1KCU|L Chain L, Crystal Structure Of Antibody Pc287
pdb|1KC5|L Chain L, Crystal Structure Of Antibody Pc287 In Complex With Ps1
Peptide
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1IQW|L Chain L, Crystal Structure Of The Fab Fragment Of The Mouse Anti-
Human Fas Antibody Hfe7a
Length = 218
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1FNS|L Chain L, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain I546v Mutant In Complex With The Function
Blocking Fab Nmc4
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1BLN|A Chain A, Anti-P-Glycoprotein Fab Mrk-16
pdb|1BLN|C Chain C, Anti-P-Glycoprotein Fab Mrk-16
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1KFA|L Chain L, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
pdb|1KFA|M Chain M, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1YED|A Chain A, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.4)
pdb|1YED|L Chain L, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.4)
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1EHL|L Chain L, 64m-2 Antibody Fab Complexed With D(5ht)(6-4)t
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1A6T|A Chain A, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
pdb|1A6T|C Chain C, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
Length = 210
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1IL1|B Chain B, Crystal Structure Of G3-519, An Anti-Hiv Monoclonal
Antibody
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1L7S|L Chain L, Crystal Structure Analysis Of The Anti-Testosterone Fab In
Complex With Testosterone
pdb|1L7T|L Chain L, Crystal Structure Analysis Of The Anti-Testosterone Fab
Fragment
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1F11|A Chain A, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
pdb|1F11|C Chain C, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
Length = 218
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1LO0|X Chain X, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO0|L Chain L, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO2|X Chain X, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO2|L Chain L, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO3|X Chain X, Retro-Diels-Alderase Catalytic Antibody: Product Analogue
pdb|1LO3|L Chain L, Retro-Diels-Alderase Catalytic Antibody: Product Analogue
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1IAI|L Chain L, Idiotype-Anti-Idiotype Fab Complex
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1CIC|A Chain A, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1NSN|L Chain L, Immunoglobulin, Staphylococcal Nuclease Mol_id: 1;
Molecule: Igg Fab (Igg1, Kappa); Chain: L, H; Domain:
Fragment N10; Synonym: N10 Fab Immunoglobulin; Mol_id:
2; Molecule: Staphylococcal Nuclease; Chain: S; Synonym:
Staphylococcal Nuclease Ribonucleate,
(Deoxyribonucleate)-3'-Nucleotidohydrolase; Ec:
3.1.31.1; Engineered: Yes
Length = 218
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1AY1|L Chain L, Anti Taq Fab Tp7
pdb|1BGX|L Chain L, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
Length = 210
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1BAF|L Chain L, Fab Fragment Of Murine Monoclonal Antibody An02 Complex
With Its Hapten (2,2,6,6-Tetramethyl-1-Piperidinyloxy-
Dinitrophenyl)
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1BQL|L Chain L, Hyhel-5 Fab Complexed With Bobwhite Quail Lysozyme
pdb|2IFF|L Chain L, Igg1 Fab Fragment (Hyhel-5) Complexed With Lysozyme Mutant
With Arg 68 Replaced By Lys (R68k)
pdb|3HFL|L Chain L, IgG1 Fab Fragment (HyHEL-5) Complexed With Lysozyme
(E.C.3.2.1.17)
Length = 212
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 135 NNFYPKDINVKWKIDGSERQNGV 157
>pdb|1PLG|L Chain L, Mol_id: 1; Molecule: Igg2akappa; Chain: L, H; Fragment:
Fab Fragment That Binds Polysialic Acid
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1RMF|L Chain L, R6.5 Murine Monoclonal Antibody Fab Fragment
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1IBG|L Chain L, Igg Fab (Igg2b, Kappa) Fragment (40-50 Fab) Complexed With
Ouabain
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 140 NNFYPKDINVKWKIDGSERQNGV 162
>pdb|1MF2|L Chain L, Anti Hiv1 Protease Fab Complex
pdb|1MF2|M Chain M, Anti Hiv1 Protease Fab Complex
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1SBS|L Chain L, Crystal Structure Of An Anti-Hcg Fab
Length = 220
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|1A3L|L Chain L, Catalysis Of A Disfavored Reaction: An Antibody Exo
Diels-Alderase-Tsa-Inhibitor Complex At 1.95 A
Resolution
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1KEL|L Chain L, Catalytic Antibody 28b4 Fab Fragment Complexed With Hapten
(1-[n-4'-Nitrobenzyl-N-4'-Carboxybutylamino]
Methylphosphonic Acid)
pdb|1KEM|L Chain L, Catalytic Antibody 28b4 Fab Fragment
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1EMT|L Chain L, Fab Antibody Fragment Of An C60 Antifullerene Antibody
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg-White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg-White Lysozyme Complexed With Lysozyme
pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg-White Lysozyme
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1OAK|L Chain L, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain In Complex With The Function Blocking Nmc-4 Fab
Length = 212
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1GGI|L Chain L, Igg2a Fab Fragment (50.1) Complex With 16-Residue Peptide
(Residues 311-328 Of Hiv-1 Gp120 (Mn Isolate))
pdb|1GGI|M Chain M, Igg2a Fab Fragment (50.1) Complex With 16-Residue Peptide
(Residues 311-328 Of Hiv-1 Gp120 (Mn Isolate))
Length = 218
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1NBV|L Chain L, Fab (Bv04-01) Autoantibody Binding Single-Stranded Dna
(Unliganded Form)
pdb|1CBV|L Chain L, Fab (Bv04-01) Autoantibody Binding Single-Stranded Dna
Complexed With The Trinucleotide Ttt (Liganded Form)
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|2FBJ|L Chain L, IgA Fab Fragment (J539) (Galactan-Binding)
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1MAM|L Chain L, Antigen-Binding Fragment (Fab) (Igg2b, Kappa)
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1E4X|L Chain L, Crossreactive Binding Of A Circularized Peptide To An
Anti-Tgfalpha Antibody Fab-Fragment
pdb|1E4X|M Chain M, Crossreactive Binding Of A Circularized Peptide To An
Anti-Tgfalpha Antibody Fab-Fragment
pdb|1E4W|L Chain L, Crossreactive Binding Of A Circularized Peptide To An
Anti-Tgfalpha Antibody Fab-Fragment
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1GPO|M Chain M, Crystal Structure Of The Rationally Designed Antibody M41
As A Fab Fragment
pdb|1GPO|L Chain L, Crystal Structure Of The Rationally Designed Antibody M41
As A Fab Fragment
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
pdb|1OPG|L Chain L, Opg2 Fab Fragment
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1E6J|L Chain L, Crystal Structure Of Hiv-1 Capsid Protein (P24) In Complex
With Fab13b5
Length = 210
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 135 NNFYPKDINVKWKIDGSERQNGV 157
>pdb|1R24|A Chain A, Fab From Murine Igg3 Kappa
pdb|1R24|C Chain C, Fab From Murine Igg3 Kappa
Length = 206
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1FE8|L Chain L, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|M Chain M, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|N Chain N, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
Length = 211
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
Length = 212
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1IFH|L Chain L, Igg2a Fab Fragment (Fab 179) COMPLEX WITH PEPTIDE OF
Influenza Hemagglutinin Ha1 (Strain X47) (Residues
101-107)
Length = 218
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|2PCP|A Chain A, Antibody Fab Complexed With Phencyclidine
pdb|2PCP|C Chain C, Antibody Fab Complexed With Phencyclidine
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1NCB|L Chain L, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Mutant With Asn 329
Replaced By Asp (N329d) Complex With Fab
pdb|1NCA|L Chain L, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Complex With Fab
pdb|1NCC|L Chain L, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Mutant With Ile 368
Replaced By Arg (I368r) Complex With Fab
pdb|1NCD|L Chain L, N9 Neuraminidase-Nc41 (E.C.3.2.1.18) Complex With Fab
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1CLZ|L Chain L, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1A3R|L Chain L, Fab Fragment (Antibody 8f5) Complexed With Peptide From
Human Rhinovirus (Serotype 2) Viral Capsid Protein Vp2
(Residues 156 - 170)
pdb|1BBD|L Chain L, Fab Fragment Of 8f5 Antibody Against Human Rhinovirus
Serotype 2
Length = 220
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|1FSK|B Chain B, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|E Chain E, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|H Chain H, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|K Chain K, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1MCP|L Chain L, Immunoglobulin Fab Fragment (McPC603)
pdb|2MCP|L Chain L, Immunoglobulin McPC603 Fab-Phosphocholine Complex
Length = 220
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|1JRH|L Chain L, Complex (AntibodyANTIGEN)
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1AIF|A Chain A, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|L Chain L, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1IAI|M Chain M, Idiotype-Anti-Idiotype Fab Complex
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 138 NNFYPKDINVKWKIDGSERQNGV 160
>pdb|1KNO|A Chain A, Mol_id: 1; Molecule: Igg2a Fab Fragment Cnj206; Chain: A,
B, C, D, E, F; Heterogen: P-Nitrophenyl Methyl
Phosphonate
pdb|1KNO|C Chain C, Mol_id: 1; Molecule: Igg2a Fab Fragment Cnj206; Chain: A,
B, C, D, E, F; Heterogen: P-Nitrophenyl Methyl
Phosphonate
pdb|1KNO|E Chain E, Mol_id: 1; Molecule: Igg2a Fab Fragment Cnj206; Chain: A,
B, C, D, E, F; Heterogen: P-Nitrophenyl Methyl
Phosphonate
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1AI1|L Chain L, Hiv-1 V3 Loop Mimic
pdb|1ACY|L Chain L, Igg1 Fab Fragment (59.1) Complexed With Hiv-1 Gp120 (Mn
Isolate) Fragment (Residues 308 - 332)
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1FBI|P Chain P, Fab Fragment Of The Monoclonal Antibody F9.13.7 (Igg1)
Complexed With Lysozyme (E.C.3.2.1.17)
pdb|1FBI|L Chain L, Fab Fragment Of The Monoclonal Antibody F9.13.7 (Igg1)
Complexed With Lysozyme (E.C.3.2.1.17)
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|2GFB|A Chain A, Igg2a Fab Fragment (Cnj206)
pdb|2GFB|C Chain C, Igg2a Fab Fragment (Cnj206)
pdb|2GFB|E Chain E, Igg2a Fab Fragment (Cnj206)
pdb|2GFB|G Chain G, Igg2a Fab Fragment (Cnj206)
pdb|2GFB|I Chain I, Igg2a Fab Fragment (Cnj206)
pdb|2GFB|K Chain K, Igg2a Fab Fragment (Cnj206)
pdb|2GFB|M Chain M, Igg2a Fab Fragment (Cnj206)
pdb|2GFB|O Chain O, Igg2a Fab Fragment (Cnj206)
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|3F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120 (Mn
Isolate); H315s Mutation
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1YEC|L Chain L, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.3)
pdb|1YEG|L Chain L, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Reaction Product
pdb|1YEF|L Chain L, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Substrate Analogue
pdb|1YEH|L Chain L, Structure Of Igg2a Fab Fragment
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1HYX|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Hydrolytic Antibody Fab 6d9 And A Transition-State
Analog
pdb|1HYY|L Chain L, Crystal Form Ii: High Resolution Crystal Structure Of The
Complex Of The Hydrolytic Antibody Fab 6d9 And A
Transition-State Analog
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1F3D|J Chain J, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten.
pdb|1F3D|L Chain L, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1KCR|L Chain L, Crystal Structure Of Antibody Pc283 In Complex With Ps1
Peptide
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1DQD|L Chain L, Crystal Structure Of Fab Hgr-2 F6, A Competitive
Antagonist Of The Glucagon Receptor
Length = 221
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPRDINVKWKIDGSERQNGV 165
>pdb|1FOR|L Chain L, Igg2a Fab Fragment (Fab17-Ia) (Orthorhombic Crystal Form)
Length = 210
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1E6O|L Chain L, Crystal Structure Of Fab13b5 Against Hiv-1 Capsid Protein
P24
Length = 212
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 135 NNFYPKDINVKWKIDGSERQNGV 157
>pdb|1I9J|L Chain L, Testosterone Complex Structure Of The Recombinant
Monoclonal Wild Type Anti-Testosterone Fab Fragment
pdb|1I9I|L Chain L, Native Crystal Structure Of The Recombinant Monoclonal
Wild Type Anti-Testosterone Fab Fragment
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1MNU|L Chain L, Unliganded Bactericidal Antibody Against Neisseria
Meningitidis
pdb|1MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
pdb|2MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1YEE|L Chain L, Structure Of A Catalytic Antibody, Igg2a Fab Fragment
(D2.5)
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|32C2|A Chain A, Structure Of An Activity Suppressing Fab Fragment To
Cytochrome P450 Aromatase
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 140 NNFYPKDINVKWKIDGSERQNGV 162
>pdb|1FAI|L Chain L, Fab Fragment From A Monoclonal Anti-Arsonate Antibody,
R19.9 (Igg2b,Kappa)
pdb|2F19|L Chain L, Fab Fragment From A Monoclonal Anti-Arsonate Antibody,
R19.9 (Igg2b,Kappa)
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1H3P|L Chain L, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 240
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|2CGR|L Chain L, Igg2b (Kappa) Fab Fragment Complexed With Antigen
N-(P-Cyanophenyl)-N'-(Diphenylemethyl) Guanidineacetic
Acid
pdb|1CGS|L Chain L, Igg2b (Kappa) Fab Fragment Against Antigen
N-(P-Cyanophenyl)-N'-(Diphenylemethyl) Guanidineacetic
Acid
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1PSK|L Chain L, The Crystal Structure Of An Fab Fragment That Binds To The
Melanoma-Associated Gd2 Ganglioside
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 137 NNFYPKDINVKWKIDGSERQNGV 159
>pdb|1GGB|L Chain L, Igg2a Fab Fragment (50.1)
pdb|1GGC|L Chain L, Igg2a Fab Fragment (50.1)
Length = 215
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1DBB|L Chain L, Fab' Fragment Of The Db3 Anti-Steroid Monoclonal Antibody
(Igg1, Subgroup 2a, Kappa 1) Complex With Progesterone
pdb|1DBJ|L Chain L, Fab' Fragment Of Monoclonal Antibody Db3 (Igg1, Subgroup
2a, Kappa 1) Complexed With Aetiocholanolone
pdb|1DBM|L Chain L, Fab' Fragment Of Monoclonal Antibody Db3 (Igg1, Subgroup
2a, Kappa 1) Complexed With
Progesterone-11-Alpha-Ol-Hemisuccinate
pdb|1DBA|L Chain L, Fab' Fragment Of The Db3 Anti-Steroid Monoclonal Antibody
(Igg1 (Subgroup 2a, Kappa 1))
pdb|2DBL|L Chain L, Fab' Fragment Of Monoclonal Antibody Db3 (Igg1, Subgroup
2a, Kappa 1) Complexed With
5-Alpha-Pregnane-3-Beta-Ol-Hemisuccinate
pdb|1DBK|L Chain L, Fab' Fragment Of Monoclonal Antibody Db3 (Igg1, Subgroup
2a, Kappa 1) Complexed With 5-Beta-Androstane-3,17-Dione
Length = 216
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1EO8|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 210
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 135 NNFYPKDINVKWKIDGSERQNGV 157
>pdb|1FLR|L Chain L, 4-4-20 Fab Fragment
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1FL3|B Chain B, Crystal Structure Of The Blue Fluorescent Antibody (19g2)
In Complex With Stilbene Hapten At 277k
pdb|1FL3|L Chain L, Crystal Structure Of The Blue Fluorescent Antibody (19g2)
In Complex With Stilbene Hapten At 277k
Length = 214
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVKWKIDGSERQNGV 163
>pdb|1HIL|A Chain A, Igg2a Fab Fragment (Fab 179)
pdb|1HIL|C Chain C, Igg2a Fab Fragment (Fab 179)
pdb|1HIM|H Chain H, Igg2a Fab Fragment (Fab 179) COMPLEX WITH PEPTIDE OF
Influenza Hemagglutinin Ha1 (Strain X47) (Residues
100-108)
pdb|1HIM|J Chain J, Igg2a Fab Fragment (Fab 179) COMPLEX WITH PEPTIDE OF
Influenza Hemagglutinin Ha1 (Strain X47) (Residues
100-108)
pdb|1HIN|L Chain L, Igg2a Fab Fragment (Fab 179) COMPLEXED WITH PEPTIDE OF
Influenza Hemagglutinin Ha1 (Strain X47) (Residues
100-107)
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|1CLO|L Chain L, Anti-Carcinoembryonic Antigen Monoclonal Antibody A5b7
Length = 213
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 136 NNFYPKDINVKWKIDGSERQNGV 158
>pdb|4FAB|L Chain L, 4-4-20 (IgG2akappa) Fab Fragment - Fluorescein (Dianion)
Complex
Length = 219
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 142 NNFYPKDINVKWKIDGSERQNGV 164
>pdb|1FRG|L Chain L, Igg2a Fab Fragment (Fab 269) COMPLEXED WITH INFLUENZA
Hemagglutinin Ha1 (Strain X47) (Residues 101 - 108)
Length = 217
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 143 NNFYPKDINVKWKIDGSERQNGV 165
>pdb|1QKZ|L Chain L, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 217
Score = 22.3 bits (46), Expect = 9.6
Identities = 8/23 (34%), Positives = 12/23 (51%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G ER G+
Sbjct: 141 NNFYPKDINVKWKIDGKERQNGV 163
>pdb|1EAP|A Chain A, 17e8 Complexed With Phenyl [1-(1-N-Succinylamino)pentyl]
Phosphonate
Length = 213
Score = 22.3 bits (46), Expect = 9.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER +G+
Sbjct: 136 NNFYPKDINVKWKIDGSERAQGV 158
>pdb|1EJO|L Chain L, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 216
Score = 22.3 bits (46), Expect = 9.6
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G+ER G+
Sbjct: 141 NNFYPKDINVRWKIDGSERQNGV 163
>pdb|1MRF|L Chain L, Igg Jel 103 Fab Fragment Complexed With
Deoxyinosine-5'-Monophosphate
pdb|1MRE|L Chain L, Igg Jel 103 Fab Fragment Complexed With
Guanosine-5'-Diphosphate
pdb|1MRD|L Chain L, Igg Jel 103 Fab Fragment Complexed With
Inosine-5'-Diphosphate
pdb|1MRC|L Chain L, Igg Jel 103 Fab Fragment
Length = 219
Score = 22.3 bits (46), Expect = 9.6
Identities = 8/23 (34%), Positives = 12/23 (51%)
Query: 42 NEYESIDLWYDWKLRGNERDKGI 64
N + D+ WK+ G ER G+
Sbjct: 142 NNFYPKDINVKWKIDGKERQNGV 164
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,196
Number of Sequences: 13198
Number of extensions: 15961
Number of successful extensions: 151
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 132
length of query: 85
length of database: 2,899,336
effective HSP length: 61
effective length of query: 24
effective length of database: 2,094,258
effective search space: 50262192
effective search space used: 50262192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)