BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644698|ref|NP_206868.1| urease accessory protein
(ureG) [Helicobacter pylori 26695]
(199 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 30 0.14
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 30 0.14
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 27 1.6
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 27 2.1
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 27 2.1
pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Dip... 27 2.1
pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Ext... 27 2.1
pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP) 27 2.1
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 27 2.1
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 27 2.1
pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter P... 26 2.7
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 25 4.6
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 25 4.6
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 25 4.6
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 25 4.6
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 25 4.6
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 25 4.6
pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implicatio... 25 6.0
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 25 6.0
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 25 6.0
pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp 25 7.9
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 0.14
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
Query: 6 VCGPVGSGKTALIEALTRHMSKDYDMAVITN-DIYTKEDAE 45
+ GP GSGK+ LI +T + D N DI KE AE
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 0.14
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
Query: 6 VCGPVGSGKTALIEALTRHMSKDYDMAVITN-DIYTKEDAE 45
+ GP GSGK+ LI +T + D N DI KE AE
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 26.9 bits (58), Expect = 1.6
Identities = 11/27 (40%), Positives = 19/27 (69%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSKDY 29
KIG+ G G GKT LI+ L ++++++
Sbjct: 153 KIGLFGGAGVGKTVLIQELIHNIAQEH 179
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 2 VKIGVCGPVGSGKTALIEALTRHMSKDY 29
V +G G V GKT L A+T ++K Y
Sbjct: 12 VNVGTIGHVDHGKTTLTAAITTVLAKTY 39
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 2 VKIGVCGPVGSGKTALIEALTRHMSKDY 29
V +G G V GKT L A+T ++K Y
Sbjct: 12 VNVGTIGHVDHGKTTLTAAITTVLAKTY 39
>pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Diphosphate Complex
Length = 394
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 2 VKIGVCGPVGSGKTALIEALTRHMSKDY 29
V +G G V GKT L A+T ++K Y
Sbjct: 13 VNVGTIGHVDHGKTTLTAAITTVLAKTY 40
>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|B Chain B, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|C Chain C, Cytochrome Ch From Methylobacterium Extorquens
Length = 100
Score = 26.6 bits (57), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 155 ADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVIAWIK 192
ADLK D KK +F I + +DD+IA++K
Sbjct: 60 ADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLK 97
>pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP)
Length = 393
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 2 VKIGVCGPVGSGKTALIEALTRHMSKDY 29
V +G G V GKT L A+T ++K Y
Sbjct: 12 VNVGTIGHVDHGKTTLTAAITTVLAKTY 39
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia
Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia
Coli
Length = 385
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 2 VKIGVCGPVGSGKTALIEALTRHMSKDY 29
V +G G V GKT L A+T ++K Y
Sbjct: 4 VNVGTIGHVDHGKTTLTAAITTVLAKTY 31
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 26.6 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 2 VKIGVCGPVGSGKTALIEALTRHMSKDY 29
V +G G V GKT L A+T ++K Y
Sbjct: 13 VNVGTIGHVDHGKTTLTAAITTVLAKTY 40
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
Length = 330
Score = 26.2 bits (56), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 6 VCGPVGSGKTALIEALTRHMSKD 28
VCG GSGKT I+++ + K+
Sbjct: 176 VCGGTGSGKTTYIKSIXEFIPKE 198
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSK 27
KIG+ G G GKT LI L +++K
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAK 179
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSK 27
KIG+ G G GKT LI L +++K
Sbjct: 151 KIGLFGGAGVGKTVLIMELINNVAK 175
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSK 27
KIG+ G G GKT LI L +++K
Sbjct: 167 KIGLFGGAGVGKTVLIMELINNIAK 191
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSK 27
KIG+ G G GKT LI L +++K
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAK 179
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSK 27
KIG+ G G GKT LI L +++K
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAK 179
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 25.4 bits (54), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KIGVCGPVGSGKTALIEALTRHMSK 27
KIG+ G G GKT LI L +++K
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAK 179
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 25.0 bits (53), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 117 IFVIDVAEGDKIPRKGGPGITRSDLLVINK 146
+F++D+A +K+ + G G T + INK
Sbjct: 231 LFLVDLAGSEKVGKTGASGQTLEEAKKINK 260
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 25.0 bits (53), Expect = 6.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 2 VKIGVCGPVGSGKTALIEALT 22
V IG+ G V GKT L +ALT
Sbjct: 11 VNIGMVGHVDHGKTTLTKALT 31
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
Complexed With Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
Complexed With Gdpnp-Mg2+
Length = 410
Score = 25.0 bits (53), Expect = 6.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 2 VKIGVCGPVGSGKTALIEALT 22
V IG+ G V GKT L +ALT
Sbjct: 11 VNIGMVGHVDHGKTTLTKALT 31
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 24.6 bits (52), Expect = 7.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKE 42
+G+ G +GSGKT + T D V+ ++ K+
Sbjct: 5 VGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKD 43
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,184,778
Number of Sequences: 13198
Number of extensions: 47683
Number of successful extensions: 147
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 21
length of query: 199
length of database: 2,899,336
effective HSP length: 84
effective length of query: 115
effective length of database: 1,790,704
effective search space: 205930960
effective search space used: 205930960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)