BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645294|ref|NP_207464.1| hypothetical protein
[Helicobacter pylori 26695]
(449 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1D09|B Chain B, Aspartate Transcarbamoylase Complexed W... 31 0.32
pdb|1RAI|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.... 31 0.32
pdb|4AT1|B Chain B, Aspartate Carbamoyltransferase (Asparta... 31 0.32
pdb|8ATC|B Chain B, Complex Of N-Phosphonacetyl-L-Aspartate... 31 0.32
pdb|1RAA|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.... 31 0.32
pdb|9ATC|B Chain B, Atcase Y165f Mutant 31 0.32
pdb|1NBE|B Chain B, Aspartate Transcarbomylase Regulatory C... 30 0.55
pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase F... 29 0.95
pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydroge... 29 0.95
pdb|1DK5|A Chain A, Crystal Structure Of Annexin 24(Ca32) F... 29 0.95
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 29 0.95
pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr... 29 1.2
pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Bind... 29 1.2
pdb|1VDR|A Chain A, Dihydrofolate Reductase >gi|2982133|pdb... 28 1.6
pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P2... 28 1.6
pdb|2ATC|B Chain B, Aspartate Carbamoyltransferase (Asparta... 28 2.1
pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Bind... 28 2.1
pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Ti... 27 4.7
pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of ... 27 6.1
pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNAR... 27 6.1
pdb|1HP8| Solution Structure Of Human P8-Mtcp1, A Cystein... 26 8.0
>pdb|1D09|B Chain B, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl- L-Aspartate (Pala)
pdb|1D09|D Chain D, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl- L-Aspartate (Pala)
pdb|1F1B|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-State In The Presence Of N-
Phosphonacetyl-L-Aspartate
pdb|1F1B|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-State In The Presence Of N-
Phosphonacetyl-L-Aspartate
pdb|1EZZ|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1I5O|B Chain B, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|D Chain D, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
Length = 153
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + ++ LY
Sbjct: 23 AQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQAT 82
Query: 274 FQRIDNFSVI 283
RIDN+ V+
Sbjct: 83 VNRIDNYEVV 92
>pdb|1RAI|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
Length = 147
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + ++ LY
Sbjct: 16 AQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQAT 75
Query: 274 FQRIDNFSVI 283
RIDN+ V+
Sbjct: 76 VNRIDNYEVV 85
>pdb|4AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Adenosine 5-Prime-Triphosphate (ATP)
pdb|4AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Adenosine 5-Prime-Triphosphate (ATP)
pdb|6AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2)
pdb|6AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2)
pdb|7AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP)
pdb|7AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Adenosine
5-Prime-Triphosphate (ATP)
pdb|2AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|2AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|3AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide
pdb|3AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide
Length = 146
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + ++ LY
Sbjct: 16 AQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQAT 75
Query: 274 FQRIDNFSVI 283
RIDN+ V+
Sbjct: 76 VNRIDNYEVV 85
>pdb|8ATC|B Chain B, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|D Chain D, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|5AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Cytidine 5-Prime-Triphosphate (CTP)
pdb|5AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (T State) (E.C.2.1.3.2) Complex With
Cytidine 5-Prime-Triphosphate (CTP)
pdb|8AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP)
pdb|8AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM), Malonate (MAL), And Cytidine
5-Prime-Triphosphate (CTP)
pdb|1AT1|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|1AT1|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (R State) (E.C.2.1.3.2) Complex With
Phosphonoacetamide (PAM) And Malonate (MAL)
pdb|1ACM|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Aspartate (PALA)
pdb|1ACM|D Chain D, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) Mutant With Arg A 54 (Catalytic Chain)
Replaced By Ala And Arg C 54 (Catalytic Chain) Replaced
By Ala (R(A)54A,R(C)54A) (R State) (E.C.2.1.3.2) Complex
With N-Phosphonacetyl-L-Aspartate (PALA)
Length = 153
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + ++ LY
Sbjct: 23 AQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQAT 82
Query: 274 FQRIDNFSVI 283
RIDN+ V+
Sbjct: 83 VNRIDNYEVV 92
>pdb|1RAA|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAA|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAB|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAB|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 250 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAC|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAC|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAD|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAD|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 500 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAE|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAE|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAF|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAF|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 750 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAG|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAG|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Fast
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAH|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAH|D Chain D, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp (Slow
Cooling Sa Refinement After 1000 Steps Of Equilibration
Of Preliminary Refined Model)
pdb|1RAI|B Chain B, Aspartate Transcarbamoylase (E.C.2.1.3.2) (Aspartate
Carbamoyltransferase) (T State) Complexed With Ctp
(Refinement 9: Final Refined Structure)
Length = 154
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + ++ LY
Sbjct: 23 AQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQAT 82
Query: 274 FQRIDNFSVI 283
RIDN+ V+
Sbjct: 83 VNRIDNYEVV 92
>pdb|9ATC|B Chain B, Atcase Y165f Mutant
Length = 146
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + ++ LY
Sbjct: 16 AQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQAT 75
Query: 274 FQRIDNFSVI 283
RIDN+ V+
Sbjct: 76 VNRIDNYEVV 85
>pdb|1NBE|B Chain B, Aspartate Transcarbomylase Regulatory Chain Mutant (T82a)
pdb|1NBE|D Chain D, Aspartate Transcarbomylase Regulatory Chain Mutant (T82a)
Length = 153
Score = 30.0 bits (66), Expect = 0.55
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + ++ LY
Sbjct: 23 AQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQAA 82
Query: 274 FQRIDNFSVI 283
RIDN+ V+
Sbjct: 83 VNRIDNYEVV 92
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 763
Score = 29.3 bits (64), Expect = 0.95
Identities = 16/62 (25%), Positives = 33/62 (52%)
Query: 298 FQLASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTKLHEKLSEFFKISLSRTKCD 357
F ++ + +N+ +IH+Y D VL+S + + + TK+ + S+ KI +S+
Sbjct: 436 FGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYIS 495
Query: 358 QT 359
+T
Sbjct: 496 ET 497
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
Length = 1332
Score = 29.3 bits (64), Expect = 0.95
Identities = 16/62 (25%), Positives = 33/62 (52%)
Query: 298 FQLASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTKLHEKLSEFFKISLSRTKCD 357
F ++ + +N+ +IH+Y D VL+S + + + TK+ + S+ KI +S+
Sbjct: 1005 FGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYIS 1064
Query: 358 QT 359
+T
Sbjct: 1065 ET 1066
>pdb|1DK5|A Chain A, Crystal Structure Of Annexin 24(Ca32) From Capsicum Annuum
pdb|1DK5|B Chain B, Crystal Structure Of Annexin 24(Ca32) From Capsicum Annuum
Length = 322
Score = 29.3 bits (64), Expect = 0.95
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 331 LKKPQQTKLHEKLS-------EFFKISLSRTKC--DQTKNYFNDKCQEDLIQQIVD 377
L K + LHEK+S E +I +R+K + T N++ D+ ED+++Q+ D
Sbjct: 175 LAKAESKILHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEHGEDILKQLED 230
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 29.3 bits (64), Expect = 0.95
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 237 IDYIQFKLS---NKDITAIRNTYKKDKKSMEIDLYGIAINFQRIDNFSVILEK-WIVFYI 292
+D IQ K++ + I IR+ ++K E + + N +D WIV
Sbjct: 396 LDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEY 455
Query: 293 K---DNRDFQLASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTK 338
DN D L S L+ + + + L L L ++++ FLKKP +T+
Sbjct: 456 AERIDNADELLESFLEGFHDESTQVQLTL----LTAIVKLFLKKPSETQ 500
>pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|B Chain B, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|C Chain C, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JTX|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JUP|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JTY|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JUM|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JT0|D Chain D, Crystal Structure Of A Cooperative Qacr-Dna Complex
Length = 194
Score = 28.9 bits (63), Expect = 1.2
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 138 LFKVDES--GCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKAKSNLIPKRQNRLLTY 195
+ K+ ES G YH ++ L+ I+ ++++K++IKAK+N + + Y
Sbjct: 28 IVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTN-----REKFYLY 82
Query: 196 QFDLSLECNIIFETLEKLALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNT 255
+LSL T E + AI F+ Y ++ + +++ KL NK I A
Sbjct: 83 N-ELSL-------TTEYYYPLQNAIIEFYTEYYKTNSINEKMN----KLENKYIDAYHVI 130
Query: 256 YKK 258
+K+
Sbjct: 131 FKE 133
>pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|B Chain B, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|D Chain D, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|E Chain E, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
Length = 188
Score = 28.9 bits (63), Expect = 1.2
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 138 LFKVDES--GCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKAKSNLIPKRQNRLLTY 195
+ K+ ES G YH ++ L+ I+ ++++K++IKAK+N + + Y
Sbjct: 28 IVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTN-----REKFYLY 82
Query: 196 QFDLSLECNIIFETLEKLALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNT 255
+LSL T E + AI F+ Y ++ + +++ KL NK I A
Sbjct: 83 N-ELSL-------TTEYYYPLQNAIIEFYTEYYKTNSINEKMN----KLENKYIDAYHVI 130
Query: 256 YKK 258
+K+
Sbjct: 131 FKE 133
>pdb|1VDR|A Chain A, Dihydrofolate Reductase
pdb|1VDR|B Chain B, Dihydrofolate Reductase
Length = 162
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 58 SLQYQTLYIVDNKKRYTLYKLY-DRIILGHTLGYSAPITLYYEWLFDDW 105
SL +T Y++ Y L++ + DR++L G T Y EW +W
Sbjct: 91 SLDAETAYVIGGAAIYALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEW 139
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 331 LKKPQQTKLHEKLSEFFKISLSRTKCDQTKNYFNDKCQEDLIQQIV 376
LK +LH+ L K++L CDQ + D C DL +IV
Sbjct: 58 LKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIV 103
>pdb|2ATC|B Chain B, Aspartate Carbamoyltransferase (Aspartate
Transcarbamylase) (E.C.2.1.3.2)
Length = 152
Score = 28.1 bits (61), Expect = 2.1
Identities = 16/70 (22%), Positives = 31/70 (43%)
Query: 214 ALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNTYKKDKKSMEIDLYGIAIN 273
A I + + F L I ++ ++ KD+ I NT+ + + E+ LY
Sbjct: 23 AEIGFKLLSLFKLTETQDRITIGLNLPSGEMGRKDLIKIENTFLSEDEVDELALYAPQAT 82
Query: 274 FQRIDNFSVI 283
RI+++ V+
Sbjct: 83 VNRINDYEVV 92
>pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
Length = 194
Score = 28.1 bits (61), Expect = 2.1
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 138 LFKVDES--GCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKAKSNLIPKRQNRLLTY 195
+ K+ ES G YH ++ L+ I+ ++++K++IKAK+N + + Y
Sbjct: 28 IVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTN-----REKFYLY 82
Query: 196 QFDLSLECNIIFETLEKLALIAGAIKNFFILIYAHSNFDIQIDYIQFKLSNKDITAIRNT 255
+LSL T E + AI F+ Y ++ + + + KL NK I A
Sbjct: 83 N-ELSL-------TTEYYYPLQNAIIEFYTEYYKTNSINEKXN----KLENKYIDAYHVI 130
Query: 256 YKK 258
+K+
Sbjct: 131 FKE 133
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 26.9 bits (58), Expect = 4.7
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 96 LYYEWLFDDWIDP-EKIMGDRFVCRTNYLESFFTTKKHLLPDTLFKVDESGCESYHENND 154
++ +W+ D+ ID EK FV N+++S + +++D S + ENND
Sbjct: 45 IHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK---------YELDFSHFRLFDENND 95
Query: 155 KDFILQSFYIQNDFLSQRYEK 175
++ I+ + QR+ K
Sbjct: 96 AAILILLEPIEKKAIPQRFXK 116
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 26.6 bits (57), Expect = 6.1
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 10/78 (12%)
Query: 99 EWLFDDWIDP-EKIMGDRFVCRTNYLESFFTTKKHLLPDTLFKVDESGCESYHENNDKDF 157
+W+ D+ ID EK FV N+++S + +++D S + ENND
Sbjct: 48 KWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK---------YELDFSHFRLFDENNDAAI 98
Query: 158 ILQSFYIQNDFLSQRYEK 175
++ I+ + QR+ K
Sbjct: 99 LILLEPIEKKAIPQRFXK 116
>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 97
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 432 KVKLRNPPKTEKITEP 447
KVK RNPPKT K++EP
Sbjct: 15 KVK-RNPPKTAKVSEP 29
>pdb|1HP8| Solution Structure Of Human P8-Mtcp1, A Cysteine-Rich Protein
Encoded By The Mtcp1 Oncogene,Reveals A New
Alpha-Helical Assembly Motif, Nmr, Minimized Average
Structure
pdb|2HP8| Solution Structure Of Human P8-Mtcp1, A Cysteine-Rich Protein
Encoded By The Mtcp1 Oncogene,Reveals A New
Alpha-Helical Assembly Motif, Nmr, 30 Structures
Length = 68
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 355 KCDQTKNYFNDKCQEDLIQQIVDCRNSLAHGRSL 388
KC Q +Y KCQ +IQ++ C GRS+
Sbjct: 16 KCLQANSYMESKCQA-VIQELRKCCAQYPKGRSV 48
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.141 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,559,371
Number of Sequences: 13198
Number of extensions: 107346
Number of successful extensions: 203
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 21
length of query: 449
length of database: 2,899,336
effective HSP length: 91
effective length of query: 358
effective length of database: 1,698,318
effective search space: 607997844
effective search space used: 607997844
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)