BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645296|ref|NP_207466.1| solute-binding signature
and mitochondrial signature protein (aspB) [Helicobacter pylori 26695]
(390 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus... 313 2e-86
pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus... 311 8e-86
pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotra... 310 2e-85
pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotra... 306 3e-84
pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotran... 244 9e-66
pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein... 244 1e-65
pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotran... 117 3e-27
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Compl... 91 3e-19
pdb|1B8G|B Chain B, 1-Aminocyclopropane-1-Carboxylate Synth... 79 9e-16
pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Tr... 74 2e-14
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichi... 70 3e-13
pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Ph... 60 4e-10
pdb|1IJI|A Chain A, Crystal Structure Of L-Histidinol Phosp... 48 2e-06
pdb|1FG7|A Chain A, Crystal Structure Of L-Histidinol Phosp... 47 5e-06
pdb|1AKA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1... 32 0.16
pdb|7AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1... 32 0.16
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 31 0.27
pdb|1MPB| Maltodextrin-Binding Protein (Maltose-Binding P... 29 1.0
pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 ... 29 1.0
pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D2... 29 1.0
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Pro... 29 1.0
pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein ... 29 1.0
pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Op... 29 1.0
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose... 29 1.0
pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose... 29 1.0
pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure >gi|14488507|... 29 1.0
pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D2... 29 1.0
pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding P... 29 1.0
pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs... 28 1.4
pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trich... 28 2.3
pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chapero... 27 3.0
pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX 26 6.8
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 26 6.8
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta... 26 6.8
pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of I... 26 6.8
pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase >gi|4388837|pd... 26 8.8
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 313 bits (803), Expect = 2e-86
Identities = 168/386 (43%), Positives = 258/386 (66%), Gaps = 15/386 (3%)
Query: 4 SSKIQSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKY 63
S ++Q++ SAT+A++ A EL+ QG D+++ +AGEPDFDTP+ +K+AA +AL G TKY
Sbjct: 5 SRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKY 64
Query: 64 TPVAGIPELLKAIAFKLKKENNLDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPF 123
P AGIPEL +A+A K ++EN L P E +V+ G KQ+LFN QA+++ GDEVI+ P+
Sbjct: 65 APPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSPY 124
Query: 124 WVTYPELVKYSGGVSQFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKA 183
WV+YPE+V+++GGV ++T + F P++++ A++P+TK L++ +P+NPTG +Y K
Sbjct: 125 WVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKE 184
Query: 184 ELEVLGEVLKDTKVWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGW 243
LE L + + +++SDEIYE L+Y+GE S V+ E T+T++G +K+ AMTGW
Sbjct: 185 VLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE---HTLTVNGAAKAFAMTGW 241
Query: 244 RMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKE-----IETMRQAFE 298
R+GYA K+++K M ++ SQ T++ ++I Q A+ LE L ++E +E R+A+
Sbjct: 242 RIGYACG-PKEVIKAMASVSSQSTTSPDTIAQWAT---LEALTNQEASRAFVEMAREAYR 297
Query: 299 RRCDLAHAKINAIGGLNALKPDGAFYLFIHIGSLCGGDSMRFCHELLEKEGVALVPGKAF 358
RR DL + A+ GL A++P GAFY+ + + D +R LLE GVA+VPG F
Sbjct: 298 RRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-APDEVRAAERLLE-AGVAVVPGTDF 354
Query: 359 GLEGYVRLSFACSEEQIEKGIERIAR 384
G+VRLS+A SEE + K +ER AR
Sbjct: 355 AAFGHVRLSYATSEENLRKALERFAR 380
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 311 bits (797), Expect = 8e-86
Identities = 167/386 (43%), Positives = 257/386 (66%), Gaps = 15/386 (3%)
Query: 4 SSKIQSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKY 63
S ++Q++ SAT+A++ A EL+ QG D+++ +AGEPDFDTP+ +K+AA +AL G TKY
Sbjct: 5 SRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKY 64
Query: 64 TPVAGIPELLKAIAFKLKKENNLDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPF 123
P AGIPEL +A+A K ++EN L P E +V+ G KQ+LFN QA+++ GDEVI+ P+
Sbjct: 65 APPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSPY 124
Query: 124 WVTYPELVKYSGGVSQFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKA 183
WV+YPE+V+++GGV ++T + F P++++ A++P+TK L++ +P+NPTG +Y K
Sbjct: 125 WVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKE 184
Query: 184 ELEVLGEVLKDTKVWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGW 243
LE L + + +++SDEIYE L+Y+GE S V+ E T+T++G + + AMTGW
Sbjct: 185 VLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE---HTLTVNGAAXAFAMTGW 241
Query: 244 RMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKE-----IETMRQAFE 298
R+GYA K+++K M ++ SQ T++ ++I Q A+ LE L ++E +E R+A+
Sbjct: 242 RIGYACG-PKEVIKAMASVSSQSTTSPDTIAQWAT---LEALTNQEASRAFVEMAREAYR 297
Query: 299 RRCDLAHAKINAIGGLNALKPDGAFYLFIHIGSLCGGDSMRFCHELLEKEGVALVPGKAF 358
RR DL + A+ GL A++P GAFY+ + + D +R LLE GVA+VPG F
Sbjct: 298 RRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-APDEVRAAERLLE-AGVAVVPGTDF 354
Query: 359 GLEGYVRLSFACSEEQIEKGIERIAR 384
G+VRLS+A SEE + K +ER AR
Sbjct: 355 AAFGHVRLSYATSEENLRKALERFAR 380
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
Length = 385
Score = 310 bits (793), Expect = 2e-85
Identities = 166/386 (43%), Positives = 256/386 (66%), Gaps = 15/386 (3%)
Query: 4 SSKIQSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKY 63
S ++Q++ SAT+A++ A EL+ QG D+++ +AGEPDFDTP+ +K+AA +AL G TKY
Sbjct: 5 SRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKY 64
Query: 64 TPVAGIPELLKAIAFKLKKENNLDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPF 123
P AGIPEL +A+A K ++EN L P E +V+ G Q+LFN QA+++ GDEVI+ P+
Sbjct: 65 APPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPY 124
Query: 124 WVTYPELVKYSGGVSQFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKA 183
WV+YPE+V+++GGV ++T + F P++++ A++P+TK L++ +P+NPTG +Y K
Sbjct: 125 WVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKE 184
Query: 184 ELEVLGEVLKDTKVWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGW 243
LE L + + +++SDEIYE L+Y+GE S V+ E T+T++G +K+ AMTGW
Sbjct: 185 VLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE---HTLTVNGAAKAFAMTGW 241
Query: 244 RMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKE-----IETMRQAFE 298
R+GYA K+++K M ++ Q T++ ++I Q A+ LE L ++E +E R+A+
Sbjct: 242 RIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWAT---LEALTNQEASRAFVEMAREAYR 297
Query: 299 RRCDLAHAKINAIGGLNALKPDGAFYLFIHIGSLCGGDSMRFCHELLEKEGVALVPGKAF 358
RR DL + A+ GL A++P GAFY+ + + D +R LLE GVA+VPG F
Sbjct: 298 RRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-APDEVRAAERLLE-AGVAVVPGTDF 354
Query: 359 GLEGYVRLSFACSEEQIEKGIERIAR 384
G+VRLS+A SEE + K +ER AR
Sbjct: 355 AAFGHVRLSYATSEENLRKALERFAR 380
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
Length = 385
Score = 306 bits (784), Expect = 3e-84
Identities = 164/386 (42%), Positives = 254/386 (65%), Gaps = 15/386 (3%)
Query: 4 SSKIQSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKY 63
S ++Q++ A +A++ A EL+ QG D+++ +AGEPDFDTP+ +K+AA +AL G TKY
Sbjct: 5 SRRVQAMKPDAVVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKY 64
Query: 64 TPVAGIPELLKAIAFKLKKENNLDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPF 123
P AGIPEL +A+A K ++EN L P E +V+ G Q+LFN QA+++ GDEVI+ P+
Sbjct: 65 APPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPY 124
Query: 124 WVTYPELVKYSGGVSQFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKA 183
WV+YPE+V+++GGV ++T + F P++++ A++P+TK L++ +P+NPTG +Y K
Sbjct: 125 WVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKE 184
Query: 184 ELEVLGEVLKDTKVWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGW 243
LE L + + +++SDEIYE L+Y+GE S V+ E T+T++G +K+ AMTGW
Sbjct: 185 VLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE---HTLTVNGAAKAFAMTGW 241
Query: 244 RMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKE-----IETMRQAFE 298
R+GYA K+++K M ++ Q T++ ++I Q A+ LE L ++E +E R+A+
Sbjct: 242 RIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWAT---LEALTNQEASRAFVEMAREAYR 297
Query: 299 RRCDLAHAKINAIGGLNALKPDGAFYLFIHIGSLCGGDSMRFCHELLEKEGVALVPGKAF 358
RR DL + A+ GL A++P GAFY+ + + D +R LLE GVA+VPG F
Sbjct: 298 RRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-APDEVRAAERLLE-AGVAVVPGTDF 354
Query: 359 GLEGYVRLSFACSEEQIEKGIERIAR 384
G+VRLS+A SEE + K +ER AR
Sbjct: 355 AAFGHVRLSYATSEENLRKALERFAR 380
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 244 bits (624), Expect = 9e-66
Identities = 138/363 (38%), Positives = 220/363 (60%), Gaps = 5/363 (1%)
Query: 30 KDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELLKAIAFKLKKENNLDYE 89
KD++S GEPDFDTPQ IK+ A +AL+ G T Y P G+ EL +AIA KLKK+N ++ +
Sbjct: 25 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD 84
Query: 90 PN-EILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWVTYPELVKYSGGVSQFIQTDEKSH 148
P EI+V GA Q+ + A +++G+EV+IP P +V+Y V +GG + T E+
Sbjct: 85 PKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDE 144
Query: 149 FKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVWVLSDEIYEKL 208
F++ +LK ++ KT+ LI+ +P NPTG + +K +LE + + + + + V+SDE+YE
Sbjct: 145 FRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHF 204
Query: 209 VYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGWRMGYAASKDKKLVKLMNNLQSQCTS 268
+Y A + M +RTIT++G SK+ AMTGWR+G+ A+ + +++ T
Sbjct: 205 IYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATC 264
Query: 269 NINSITQMASIVALEGLVDKEIETMRQAFERRCDLAHAKINAIGGLNALKPDGAFYLFIH 328
+ I A+ + K +E MR+ ++RR L ++N + GL +KP GAFY+F
Sbjct: 265 PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPR 323
Query: 329 IGSLCGGDSMRFCHELLEKEGVALVPGKAFGL--EGYVRLSFACSEEQIEKGIERIARFV 386
I G S +F +L++ VA+VPG AFG EGYVR+S+A + E++E+ +ER+ R +
Sbjct: 324 IRD-TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMERMERVL 382
Query: 387 KSK 389
K +
Sbjct: 383 KER 385
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 244 bits (623), Expect = 1e-65
Identities = 142/392 (36%), Positives = 232/392 (58%), Gaps = 9/392 (2%)
Query: 1 MLYSSKIQSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGF 60
M S +++ +S S + +A +K D++S GEPDFDTPQ IK+ A +AL+ G
Sbjct: 1 MALSDRLELVSASEIRKLFDIAAGMK----DVISLGIGEPDFDTPQHIKEYAKEALDKGL 56
Query: 61 TKYTPVAGIPELLKAIAFKLKKENNLDYEPN-EILVSNGAKQSLFNAIQALIEEGDEVII 119
T Y P G+ EL +AIA KLKK+N ++ +P EI+V GA Q+ + A +++G+EV+I
Sbjct: 57 THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLI 116
Query: 120 PVPFWVTYPELVKYSGGVSQFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGML 179
P P +V+Y V +GG + T E+ F++ +LK ++ KT+ LI+ +P NPTG +
Sbjct: 117 PTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAV 176
Query: 180 YSKAELEVLGEVLKDTKVWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITISGLSKSVA 239
+K +LE + + + + + V+SDE+YE +Y A + M +RTIT++G SK+ A
Sbjct: 177 LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 236
Query: 240 MTGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFER 299
MTGWR+G+ A+ + +++ T + I A+ + K +E MR+ ++R
Sbjct: 237 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDR 296
Query: 300 RCDLAHAKINAIGGLNALKPDGAFYLFIHIGSLCGGDSMRFCHELLEKEGVALVPGKAFG 359
R L ++N + GL +KP GAFY+F I G S +F +L++ VA+VPG AFG
Sbjct: 297 RRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRD-TGLTSKKFSELMLKEARVAVVPGSAFG 354
Query: 360 L--EGYVRLSFACSEEQIEKGIERIARFVKSK 389
EGYVR+S+A + E++E+ ++R+ R +K +
Sbjct: 355 KAGEGYVRISYATAYEKLEEAMDRMERVLKER 386
>pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
Length = 416
Score = 117 bits (292), Expect = 3e-27
Identities = 97/384 (25%), Positives = 166/384 (42%), Gaps = 35/384 (9%)
Query: 30 KDILSFSAGEPDFDTPQAIKDAAIKALNDGFTK-----YTPVAGIPELLKAIA------F 78
K I+ S G+P D A IK L + Y P G PE +A+A F
Sbjct: 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSF 92
Query: 79 KLKKENNLDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWVTYPELVKYSGGVS 138
K+E + +++ +G + AI A+ + GD ++P P + Y + K G
Sbjct: 93 VHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGM 152
Query: 139 QFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVW 198
F ++ ++ +++ KTK+LI+T PSNP G +S+ +E + + ++ ++
Sbjct: 153 HFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 212
Query: 199 VLSDEIYEKLVYKGE-----FVSCAAVSEEMKKRTITISGLSKSVAMTGWRMGYAASKD- 252
+ SDEIY +V+KG+ F S A + + + + G + ++ + GWR+G+ D
Sbjct: 213 LFSDEIYAGMVFKGKDPNATFTSVADFETTVPR--VILGGTAXNLVVPGWRLGWLLYVDP 270
Query: 253 --------KKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFERRCDLA 304
+ L ++ + CT + Q A AL + ++ + E
Sbjct: 271 HGNGPSFLEGLKRVGMLVCGPCT-----VVQAALGEALLNTPQEHLDQIVAKIEESAMYL 325
Query: 305 HAKINAIGGLNALKPDGAFYLFIHIGSLCGGD---SMRFCHELLEKEGVALVPGKAFGLE 361
+ I GL P GA YL I D + F +LLE+E V ++PG F
Sbjct: 326 YNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAP 385
Query: 362 GYVRLSFACSEEQIEKGIERIARF 385
G+ RL+ E + +ERI F
Sbjct: 386 GFTRLTTTRPVEVYREAVERIKAF 409
>pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
Length = 428
Score = 90.5 bits (223), Expect = 3e-19
Identities = 82/342 (23%), Positives = 154/342 (44%), Gaps = 24/342 (7%)
Query: 68 GIPELLKAIAFKLKKENN--LDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWV 125
G+PE KAIA ++K + ++P ++++ GA + I L + GD ++P P++
Sbjct: 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYP 143
Query: 126 TYPELVKYSGGVSQF-IQTDEKSHFKITPKQLKDALSP------KTKMLILTTPSNPTGM 178
+ +++ GV I + ++FKIT K +K+A K K LILT PSNP G
Sbjct: 144 AFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGT 203
Query: 179 LYSKAELEVLGEVLKDTKVWVLSDEIYEKLVY-KGEFVSCAAVSEEM------KKRTITI 231
K L+ + + ++ DEIY V+ +FVS A + +E K +
Sbjct: 204 TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV 263
Query: 232 SGLSKSVAMTGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIE 291
LSK + + G+R+G S + +V + S + + +A++++ E VD +
Sbjct: 264 YSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLR 323
Query: 292 TMRQAFERRCDLAHAKINAIGGLNALKPDGAFYLFIHIGSLCG----GDSMRFCHELLEK 347
+R + + G+ LK + + ++ + L M ++
Sbjct: 324 ESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIIND 382
Query: 348 EGVALVPGKAFGLE--GYVRLSFACSEE-QIEKGIERIARFV 386
+ + PG +F + G+ R+ FA ++ ++ + RI RFV
Sbjct: 383 VKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFV 424
>pdb|1B8G|B Chain B, 1-Aminocyclopropane-1-Carboxylate Synthase
pdb|1B8G|A Chain A, 1-Aminocyclopropane-1-Carboxylate Synthase
Length = 429
Score = 79.0 bits (193), Expect = 9e-16
Identities = 73/344 (21%), Positives = 158/344 (45%), Gaps = 26/344 (7%)
Query: 68 GIPELLKAIAFKLK--KENNLDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWV 125
G+P KA+ + + N + ++PN ++++ GA + I L + G+ V+IP P++
Sbjct: 85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYP 144
Query: 126 TYPELVKYSGGVSQF-IQTDEKSHFKITPKQLKDALSP------KTKMLILTTPSNPTGM 178
+ +K+ GV I + F+IT L++A + K +++T PSNP G
Sbjct: 145 GFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT 204
Query: 179 LYSKAELEVLGEVLKDTKVWVLSDEIYEKLVYKG-EFVSCAAV--------SEEMKKRTI 229
++ EL +L ++D + ++SDEIY + F+S V + E+ +R
Sbjct: 205 TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVH 264
Query: 230 TISGLSKSVAMTGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKE 289
+ LSK + + G+R+G S D +V + S + + ++++++ + L
Sbjct: 265 VVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNY 324
Query: 290 IETMRQAFERRCDLAHAKINAIGGLNALKPDGAFYLFIHIGSLCGGDS----MRFCHELL 345
I + ++R + + G++ L + + ++ + L ++ M +++
Sbjct: 325 IAENHKRLKQRQKKLVSGLQK-SGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIV 383
Query: 346 EKEGVALVPGKAFGL--EGYVRLSFA-CSEEQIEKGIERIARFV 386
+ + + PG + G+ R+ FA E ++ ++R+ FV
Sbjct: 384 YEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFV 427
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 74.3 bits (181), Expect = 2e-14
Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 9/222 (4%)
Query: 29 GKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELLKAIAFKLKKENNLDY 88
G +++ S + +F P + + K L++ YT E K + +K + D
Sbjct: 30 GNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDI 87
Query: 89 EPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWVTYPELVKYSGGVSQFIQTD--EK 146
+ + I+ + G ++FNA++ + GD VII P V YP + + I+ + EK
Sbjct: 88 QTDWIINTAGVVPAVFNAVREFTKPGDGVIIITP--VYYPFFMAIKNQERKIIECELLEK 145
Query: 147 SHFKITPKQLKDALSP--KTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVWVLSDEI 204
+ Q + LS K L+ +P NP G ++ K EL+ + +++ + + + SDEI
Sbjct: 146 DGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEI 205
Query: 205 YEKLVYKG-EFVSCAAVSEEMKKRTITISGLSKSVAMTGWRM 245
+ L+ G E ++ E++ +TIT + SK+ + G M
Sbjct: 206 HFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM 247
>pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal- 5'-Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal- 5'-Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 70.5 bits (171), Expect = 3e-13
Identities = 81/368 (22%), Positives = 163/368 (44%), Gaps = 18/368 (4%)
Query: 31 DILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELLKAIAFKLKKENNLDYEP 90
D+L F+ + DF T I +A + L G Y+ E L AIA ++ +
Sbjct: 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDS 87
Query: 91 NEILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWVTYPELVKYSGGVSQFIQTDEKSHFK 150
++ + I+ E G+ V+I P + + + ++ + + ++++
Sbjct: 88 QTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGW 147
Query: 151 ITPKQLKDAL--SPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVWVLSDEIYEKL 208
+A+ P+ K+++L +P NPTG +++ ELE++ ++ + V V+SDEI+ +
Sbjct: 148 FCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM 207
Query: 209 VYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGWRMGY-----AASKDKKLVKLMNNLQ 263
V+ GE + + SG SKS + Y ++S+D L + L+
Sbjct: 208 VW-GEQPHIPWSNVARGDWALLTSG-SKSFNIPALTGAYGIIENSSSRDAYL----SALK 261
Query: 264 SQCTSNINSITQMASIVALEGLVDKEIETMRQAFERRCDLAHAKIN-AIGGLNALKPDGA 322
+ + S+ + + +A ++ +R + K+N A LN P
Sbjct: 262 GRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQST 321
Query: 323 FYLFIHIGSLCGGDSMRFCHELLEKEGVALVPGKAFGLE--GYVRLSFACSEEQIEKGIE 380
+ ++ + L D L+E+E VA++PG +G E G+VRL+ C ++EKG+
Sbjct: 322 YLAWLDLRPL-NIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVA 380
Query: 381 RIARFVKS 388
+ +++
Sbjct: 381 GLINAIRA 388
>pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica In Its Apo State
pdb|1LC7|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With A
Substrate
pdb|1LC8|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With Its
Reaction Intermediate
pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Salmonella Enterica
Length = 364
Score = 60.1 bits (144), Expect = 4e-10
Identities = 63/253 (24%), Positives = 113/253 (43%), Gaps = 18/253 (7%)
Query: 32 ILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELLKAIAFKLKKENNLDYEPN 91
+L FSA P ++K A I L D +Y P A L +A+A + +
Sbjct: 26 LLDFSANINPLGMPVSVKRALIDNL-DCIERY-PDADYFHLHQALA------RHHQVPAS 77
Query: 92 EILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWVTYPELVKYSGGVSQFIQTDEKSHFKI 151
IL NG +S+F L + +I P + Y + SG + E +++
Sbjct: 78 WILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL 135
Query: 152 TPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVWVLSDEIY-EKLVY 210
T L +AL+P L L TP+NPTG+L + L+ + + K + ++ DE + + + +
Sbjct: 136 TDAIL-EALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH 194
Query: 211 KGEFVSCAAVSEEMKKRTITISGLSKSVAMTGWRMGYAASKDKKLVKLMNNLQSQCTSNI 270
+ F+ + + + L+K A+ G R+GY + D + M + Q ++
Sbjct: 195 ETGFIPALKDNPHI----WVLRSLTKFYAIPGLRLGYLVNSDDAAMARMR--RQQMPWSV 248
Query: 271 NSITQMASIVALE 283
N++ +A VAL+
Sbjct: 249 NALAALAGEVALQ 261
>pdb|1IJI|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase With Plp
pdb|1GEX|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Histidinol-Phosphate
pdb|1GEY|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Pyridoxal 5'-Phosphate
Length = 356
Score = 48.1 bits (113), Expect = 2e-06
Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 18/217 (8%)
Query: 83 ENNLDY---EPNEILVSNGAKQSLFNAIQALIEEG-DEVIIPVPFWVTYPELVKYSGGVS 138
EN Y +P ++LVS GA + + I+A E G D ++ P + Y + G
Sbjct: 65 ENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEC 124
Query: 139 QFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVW 198
+ + T + ++++ + + D L K++ + +P+NPTG L + + L E+ + K
Sbjct: 125 RTVPTLD--NWQLDLQGISDKLDG-VKVVYVCSPNNPTGQLINPQDFRTLLELTRG-KAI 180
Query: 199 VLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGWRMGYAASKDKKLVKL 258
V++DE Y + + A + + LSK+ A+ G R G+ + ++ + L
Sbjct: 181 VVADEAYIEFCPQASLAGWLAEYPHL----AILRTLSKAFALAGLRCGFTLANEEVINLL 236
Query: 259 MNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQ 295
M + S T +A I A + L + I MR+
Sbjct: 237 MKVIAPYPLS-----TPVADIAA-QALSPQGIVAMRE 267
>pdb|1FG7|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase With Pyridoxal-5'-Phosphate
pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase Complexed With L-Histidinol
Length = 356
Score = 46.6 bits (109), Expect = 5e-06
Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 12/175 (6%)
Query: 83 ENNLDY---EPNEILVSNGAKQSLFNAIQALIEEG-DEVIIPVPFWVTYPELVKYSGGVS 138
EN Y +P ++LVS GA + + I+A E G D ++ P + Y + G
Sbjct: 65 ENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGXYSVSAETIGVEC 124
Query: 139 QFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVW 198
+ + T + ++++ + + D L K++ + +P+NPTG L + + L E+ + K
Sbjct: 125 RTVPTLD--NWQLDLQGISDKLDG-VKVVYVCSPNNPTGQLINPQDFRTLLELTRG-KAI 180
Query: 199 VLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITISGLSKSVAMTGWRMGYAASKDK 253
V++DE Y + + A + + LSK+ A+ G R G+ + ++
Sbjct: 181 VVADEAYIEFCPQASLAGWLAEYPHL----AILRTLSKAFALAGLRCGFTLANEE 231
>pdb|1AKA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) (Plp-Form)
pdb|1AKA|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) (Plp-Form)
pdb|1AKB|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
N-(5'-Phosphopyridoxyl)-L-Aspartate
pdb|1AKC|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
Length = 401
Score = 31.6 bits (70), Expect = 0.16
Identities = 30/153 (19%), Positives = 65/153 (41%), Gaps = 8/153 (5%)
Query: 62 KYTPVAGIPELLKAIAFKLKKENNLDYEPNEILV-----SNGAKQSLFNAIQALIEEGDE 116
+Y P+AG+ + +A A EN+ ++ + G+ + N +Q + +
Sbjct: 66 EYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRD 125
Query: 117 VIIPVPFWVTYPELVKYSG-GVSQFIQTDEKSHFKITPKQLKD--ALSPKTKMLILTTPS 173
V +P P W + + + +G + + D K+ ++D + K+ +L+
Sbjct: 126 VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAH 185
Query: 174 NPTGMLYSKAELEVLGEVLKDTKVWVLSDEIYE 206
NPTG+ + + + L V+K + D Y+
Sbjct: 186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ 218
>pdb|7AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|7AAT|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|1TAR|A Chain A, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
(Holoenzyme, Triclinic Crystal Form, Code Op2)
pdb|1TAR|B Chain B, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
(Holoenzyme, Triclinic Crystal Form, Code Op2)
pdb|9AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|9AAT|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|1OXO|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1OXO|B Chain B, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|8AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Complex Wtih
Pyridoxal-5'-Phosphate At Ph 5.1
pdb|8AAT|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Complex Wtih
Pyridoxal-5'-Phosphate At Ph 5.1
pdb|1AMA| Aspartate Aminotransferase (E.C.2.6.1.1) Complex With Alpha-Methyl
Aspartate-Pyridoxal-5'-Phosphate
pdb|1MAQ| Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex With
L-Glutamate-Pyridoxal-5'-Phosphate
pdb|1IVR|A Chain A, Structure Of Aspartate Aminotransferase
pdb|1MAP| Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex With
L-Aspartate-Pyridoxal-5'-Phosphate
pdb|1OXP| Aspartate Aminotransferase, H-Asp Complex, Closed Conformation
pdb|1TAS|A Chain A, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex
With Alpha-Methylaspartate Complex (Monoclinic Crystal
Form, Code Cl2)
pdb|1TAS|B Chain B, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex
With Alpha-Methylaspartate Complex (Monoclinic Crystal
Form, Code Cl2)
pdb|1TAT|A Chain A, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex
With Maleate (Orthorhombic Crystal Form, Code Cl3)
pdb|1TAT|B Chain B, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex
With Maleate (Orthorhombic Crystal Form, Code Cl3)
Length = 401
Score = 31.6 bits (70), Expect = 0.16
Identities = 30/153 (19%), Positives = 65/153 (41%), Gaps = 8/153 (5%)
Query: 62 KYTPVAGIPELLKAIAFKLKKENNLDYEPNEILV-----SNGAKQSLFNAIQALIEEGDE 116
+Y P+AG+ + +A A EN+ ++ + G+ + N +Q + +
Sbjct: 66 EYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRD 125
Query: 117 VIIPVPFWVTYPELVKYSG-GVSQFIQTDEKSHFKITPKQLKD--ALSPKTKMLILTTPS 173
V +P P W + + + +G + + D K+ ++D + K+ +L+
Sbjct: 126 VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAH 185
Query: 174 NPTGMLYSKAELEVLGEVLKDTKVWVLSDEIYE 206
NPTG+ + + + L V+K + D Y+
Sbjct: 186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ 218
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 30.8 bits (68), Expect = 0.27
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 138 SQFIQTDEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKV 197
S F+ T+EK K ++D+LS + K L+ + + L K + E LK K+
Sbjct: 327 SDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEK-----EFLKKLKL 381
Query: 198 WVLSDEIYEKLVYKGEFVSCAAVSEEMKKR 227
+ +I ++L G + +++ +++K+
Sbjct: 382 DIQPYDINQRLQDTGGLIDSPSINLDVRKQ 411
>pdb|1MPB| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg)
pdb|1MPD| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg), Complexed With Maltose
pdb|1MPC| Maltodextrin-Binding Protein (Maltose-Binding Protein) Mutant,
With Arginine Replacing Tryptophan At Position 230
(Trp-230-Arg)
Length = 370
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C
Cross-Linked In Crystal
Length = 372
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 133 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 165
>pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
Length = 370
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|3MBP| Maltodextrin-Binding Protein With Bound Maltotriose
pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|4MBP| Maltodextrin Binding Protein With Bound Maltetrose
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1ANF| Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB| D-Maltodextrin-Binding Protein
pdb|1OMP| D-Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
Length = 370
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose-Binding Protein)
Mutant With Ala 301 Replaced By Gly Ser (A301gs)
Complexed With Maltose
Length = 371
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 132 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 164
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 133 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 165
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 18 ISTLAKELKSQGKDILSFSAGEPDFDTPQAIKD 50
I L KELK++GK L F+ EP F P D
Sbjct: 128 IPALDKELKAKGKSALMFNLQEPYFTWPLIAAD 160
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 28.5 bits (62), Expect = 1.4
Identities = 17/57 (29%), Positives = 31/57 (53%), Gaps = 9/57 (15%)
Query: 8 QSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYT 64
Q +S +++A ST+ L++ GKD + AG+P +++ A+ + F KYT
Sbjct: 44 QIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP---------NSSAVAILETFQKYT 91
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 27.7 bits (60), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 153 PKQLKDALSPKTKMLILTTPSNPT 176
P ++K + P TK++ TP+NPT
Sbjct: 137 PGEVKKHMKPNTKIVYFETPANPT 160
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 27.3 bits (59), Expect = 3.0
Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 9/57 (15%)
Query: 8 QSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYT 64
Q S +++A ST+ L++ GKD + AG+P +++ A+ + F KYT
Sbjct: 43 QIXSVESSVAPSTIINTLRNCGKDAIIRGAGKP---------NSSAVAILETFQKYT 90
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
Length = 372
Score = 26.2 bits (56), Expect = 6.8
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 85 NLDYEPNEILVSNGAKQSLFNAIQALIEEGDEVIIPVPFWVTYP 128
+LD+ PN +L++ G+ A I+E +E P P+ P
Sbjct: 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 190
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 26.2 bits (56), Expect = 6.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 132 KYSGGVSQFIQTDEKSHFKITPKQLKD 158
++ GG+ I+ D K+ FKI ++LK+
Sbjct: 155 RFEGGILVEIELDNKTRFKIIKEKLKE 181
>pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 26.2 bits (56), Expect = 6.8
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 105 NAIQALIEEGDEVIIPVPFWV----TYPELVKYSGGVSQFIQTDEKSHFKITPKQLKDAL 160
+A+ LI+ G+E++ + ++V SG V + + T + ++ A+
Sbjct: 162 SAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLD-------EVAAAI 214
Query: 161 SPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVWVLSDEIYEKLVYKGEFVSCAAV 220
P+TK++ L +P+NP + +++ + E+ VL D V A +
Sbjct: 215 GPQTKLVWLESPTNPRQQI---SDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271
Query: 221 SEEMKKRTITISGLSKSVAMTGWRMGYAASKDKKLVKLMNNLQS 264
M T I+G S +A G A K +KL K + LQ+
Sbjct: 272 --VMHSATKFIAGHSDVMA------GVLAVKGEKLAKEVYFLQN 307
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 26.2 bits (56), Expect = 6.8
Identities = 20/84 (23%), Positives = 33/84 (38%)
Query: 147 SHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEVLGEVLKDTKVWVLSDEIYE 206
S F + P Q K ++ TP N + K LE E+ V E +
Sbjct: 144 SSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSD 203
Query: 207 KLVYKGEFVSCAAVSEEMKKRTIT 230
+L + V C +SE++ ++T
Sbjct: 204 RLEWIQAHVQCEGLSEQLVFNSVT 227
>pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-Trna Synthetase
Length = 438
Score = 25.8 bits (55), Expect = 8.8
Identities = 14/53 (26%), Positives = 23/53 (42%)
Query: 6 KIQSLSESATIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALND 58
++ S E +E ++ DIL+F EP P+ D A++ L D
Sbjct: 242 EVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGD 294
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,157,988
Number of Sequences: 13198
Number of extensions: 88814
Number of successful extensions: 253
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 37
length of query: 390
length of database: 2,899,336
effective HSP length: 90
effective length of query: 300
effective length of database: 1,711,516
effective search space: 513454800
effective search space used: 513454800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)