BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645297|ref|NP_207467.1| hypothetical protein
[Helicobacter pylori 26695]
(426 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Me... 30 0.52
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inh... 30 0.52
pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sul... 28 2.0
pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal S... 28 2.6
pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii He... 28 2.6
pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Recep... 27 3.4
pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From ... 26 9.8
pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase F... 26 9.8
pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydroge... 26 9.8
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
Length = 327
Score = 30.0 bits (66), Expect = 0.52
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 107 DKKGTYNIEIELVSNANDFRGVFGE-VLGIVKDTFGDLLQLLTNLKNKEIEFNFHKKINY 165
D +GT +I + + VF E V G+ L+++ N N E++++FH K+
Sbjct: 95 DSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMN-ELDYSFHAKVLN 153
Query: 166 GLPFGIIFIASNSDNPIDIDNKTKKLKSCFRDDESNCFIDCP------ITIEDYLILDNL 219
L +GI + + CFR+D + P ++D L+ D+
Sbjct: 154 ALDYGI------------PQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSE 201
Query: 220 KSCFVIQNKPNVTLFDNDENDRPFNLKRYLLG 251
VI K V E P ++ ++G
Sbjct: 202 VEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVG 233
>pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1HMY| Hhai Dna (Cytosine-C5-)-Methyltransferase (E.C.2.1.1.37) Complex
With S-Adenosyl-L-Methionine
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
Length = 327
Score = 30.0 bits (66), Expect = 0.52
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 107 DKKGTYNIEIELVSNANDFRGVFGE-VLGIVKDTFGDLLQLLTNLKNKEIEFNFHKKINY 165
D +GT +I + + VF E V G+ L+++ N N E++++FH K+
Sbjct: 95 DSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMN-ELDYSFHAKVLN 153
Query: 166 GLPFGIIFIASNSDNPIDIDNKTKKLKSCFRDDESNCFIDCP------ITIEDYLILDNL 219
L +GI + + CFR+D + P ++D L+ D+
Sbjct: 154 ALDYGI------------PQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSE 201
Query: 220 KSCFVIQNKPNVTLFDNDENDRPFNLKRYLLG 251
VI K V E P ++ ++G
Sbjct: 202 VEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVG 233
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 28.1 bits (61), Expect = 2.0
Identities = 26/105 (24%), Positives = 48/105 (44%), Gaps = 11/105 (10%)
Query: 298 PNELPQFLTNFKNSKIPNGN-----ISFSPPKNSPSISSYALSDKIKREVRDTFDRYLWH 352
P P+F+ F ++P G+ S+ SP + + + +K ++R + L H
Sbjct: 151 PGSFPEFVEKFMQGQVPYGSWYKHVKSWWEKGKSPRV-LFLFYEDLKEDIRKEVIK-LIH 208
Query: 353 GYSKIPQEKRIAKIKEQVK-EEIKLNPSFRNYRV--DSEQNRKIN 394
+ P E+ + +I +E+K NPS NY D N+K++
Sbjct: 209 FLERKPSEELVDRIIHHTSFQEMKNNPS-TNYTTLPDEIMNQKLS 252
>pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|B Chain B, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|C Chain C, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|D Chain D, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|E Chain E, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|F Chain F, Annexin Xii E105k Homohexamer Crystal Structure
Length = 315
Score = 27.7 bits (60), Expect = 2.6
Identities = 23/95 (24%), Positives = 41/95 (42%), Gaps = 14/95 (14%)
Query: 70 VVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKG------------TYNIEIE 117
++ E++ ++KN LL + K++ NR ++ E KG EI+
Sbjct: 218 ILQAIENEFSGDIKNGLLAIVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEID 277
Query: 118 LVSNANDFRGVFGEVL--GIVKDTFGDLLQLLTNL 150
L + F+ ++G+ L I D GD LL +
Sbjct: 278 LANIKETFQAMYGKSLYEFIADDCSGDYKDLLLQI 312
>pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|B Chain B, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|C Chain C, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|D Chain D, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|E Chain E, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|F Chain F, Crystal Structure Of The Annexin Xii Hexamer
Length = 315
Score = 27.7 bits (60), Expect = 2.6
Identities = 23/95 (24%), Positives = 41/95 (42%), Gaps = 14/95 (14%)
Query: 70 VVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKG------------TYNIEIE 117
++ E++ ++KN LL + K++ NR ++ E KG EI+
Sbjct: 218 ILQAIENEFSGDIKNGLLAIVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEID 277
Query: 118 LVSNANDFRGVFGEVL--GIVKDTFGDLLQLLTNL 150
L + F+ ++G+ L I D GD LL +
Sbjct: 278 LANIKETFQAMYGKSLYEFIADDCSGDYKDLLLQI 312
>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
Length = 478
Score = 27.3 bits (59), Expect = 3.4
Identities = 32/129 (24%), Positives = 61/129 (46%), Gaps = 26/129 (20%)
Query: 114 IEIELVSNANDFRG-------VFGEVLGIVK----DTFGDLLQLLTNLKNKEIEFNFHKK 162
+ I L+S A D+R V E L + + ++ GDL LT ++ ++ +N
Sbjct: 29 LHILLISKAEDYRSYRFPKLTVITEYLLLFRVAGLESLGDLFPNLTVIRGWKLFYN---- 84
Query: 163 INYGLPFGIIFIASNSDNPIDIDNKTKKLKSCFRDDESN--CFIDCPITIEDYLILDNLK 220
Y L +IF +N + I + N + R +++ C++ T++ LILD +
Sbjct: 85 --YAL---VIFEMTNLKD-IGLYNLRNITRGAIRIEKNADLCYLS---TVDWSLILDAVS 135
Query: 221 SCFVIQNKP 229
+ +++ NKP
Sbjct: 136 NNYIVGNKP 144
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
Length = 605
Score = 25.8 bits (55), Expect = 9.8
Identities = 11/46 (23%), Positives = 20/46 (42%)
Query: 371 KEEIKLNPSFRNYRVDSEQNRKINEIAEGLKSGKIIGKKVIANAFD 416
K ++NP + D + I E+ + G +IG + AF+
Sbjct: 368 KNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFN 413
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 763
Score = 25.8 bits (55), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 6/58 (10%)
Query: 254 EKLGFEPTGIFYCENANTHKIELIGN-DSDFREVLLEFSEN-----IPKAPNELPQFL 305
E+L + P G + +T+KI G+ ++FR LL N KA E P FL
Sbjct: 640 EELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFL 697
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
Length = 1332
Score = 25.8 bits (55), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 6/58 (10%)
Query: 254 EKLGFEPTGIFYCENANTHKIELIGN-DSDFREVLLEFSEN-----IPKAPNELPQFL 305
E+L + P G + +T+KI G+ ++FR LL N KA E P FL
Sbjct: 1209 EELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFL 1266
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,521,925
Number of Sequences: 13198
Number of extensions: 112543
Number of successful extensions: 243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 12
length of query: 426
length of database: 2,899,336
effective HSP length: 91
effective length of query: 335
effective length of database: 1,698,318
effective search space: 568936530
effective search space used: 568936530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)