BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645298|ref|NP_207468.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of... 31 0.14
pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bo... 31 0.14
pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I >gi|67... 31 0.14
pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of... 31 0.14
pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragm... 31 0.14
pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An ... 31 0.14
pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of... 31 0.14
pdb|1TAQ| Structure Of Taq Dna Polymerase 29 0.40
pdb|1TAU|A Chain A, Structure Of Dna Polymerase 29 0.40
pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Pro... 28 0.67
pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudo... 28 1.1
pdb|1MHY|G Chain G, Methane Monooxygenase Hydroxylase >gi|2... 27 1.5
pdb|1QC6|A Chain A, Evh1 Domain From EnaVASP-Like Protein I... 26 3.3
pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Confor... 26 4.4
pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coor... 26 4.4
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Acti... 26 4.4
pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Cros... 26 4.4
pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:... 26 4.4
pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near ... 26 4.4
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 25 5.7
pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essen... 25 5.7
pdb|1JG7|A Chain A, T4 Phage Bgt In Complex With Udp And Mn... 25 5.7
pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Compl... 25 5.7
pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal O... 25 7.5
pdb|2CAV|A Chain A, Canavalin From Jack Bean >gi|6729826|pd... 25 7.5
pdb|1CAU|A Chain A, Canavalin (Jack Bean 7s Vicilin) >gi|44... 25 7.5
>pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 30.8 bits (68), Expect = 0.14
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I A +EG VALDY+ I + + D +F
Sbjct: 286 DPNLQNI--PVRT---PLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 340
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 341 QEGRDIHTETASWMFGVPREAVD 363
>pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
pdb|1KTQ| Dna Polymerase
Length = 543
Score = 30.8 bits (68), Expect = 0.14
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I A +EG VALDY+ I + + D +F
Sbjct: 289 DPNLQNI--PVRT---PLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 343
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 344 QEGRDIHTETASWMFGVPREAVD 366
>pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I
pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
Length = 540
Score = 30.8 bits (68), Expect = 0.14
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I A +EG VALDY+ I + + D +F
Sbjct: 286 DPNLQNI--PVRT---PLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 340
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 341 QEGRDIHTETASWMFGVPREAVD 363
>pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 30.8 bits (68), Expect = 0.14
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I A +EG VALDY+ I + + D +F
Sbjct: 286 DPNLQNI--PVRT---PLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 340
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 341 QEGRDIHTETASWMFGVPREAVD 363
>pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus
Length = 538
Score = 30.8 bits (68), Expect = 0.14
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I A +EG VALDY+ I + + D +F
Sbjct: 284 DPNLQNI--PVRT---PLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 338
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 339 QEGRDIHTETASWMFGVPREAVD 361
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
Orientation For The Structure-Specific Nuclease Domain
Length = 832
Score = 30.8 bits (68), Expect = 0.14
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I A +EG VALDY+ I + + D +F
Sbjct: 578 DPNLQNI--PVRT---PLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 632
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 633 QEGRDIHTETASWMFGVPREAVD 655
>pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
From T. Aquaticus Bound To A PrimerTEMPLATE DNA
Length = 539
Score = 30.8 bits (68), Expect = 0.14
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I A +EG VALDY+ I + + D +F
Sbjct: 285 DPNLQNI--PVRT---PLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 339
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 340 QEGRDIHTETASWMFGVPREAVD 362
>pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 29.3 bits (64), Expect = 0.40
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I +EG VALDY+ I + + D +F
Sbjct: 578 DPNLQNI--PVRT---PLGQRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 632
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 633 QEGRDIHTETASWMFGVPREAVD 655
>pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 29.3 bits (64), Expect = 0.40
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 113 DLNIQDLLGPLKTQAFPLSYIITDAINQKEG---VALDYALIN--DIKYNLLDNTFHFIF 167
D N+Q++ P++T PL I +EG VALDY+ I + + D +F
Sbjct: 578 DPNLQNI--PVRT---PLGQRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVF 632
Query: 168 DVGNPLLKESSQFIIEVPREALD 190
G + E++ ++ VPREA+D
Sbjct: 633 QEGRDIHTETASWMFGVPREAVD 655
>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
Aminopeptidase From Lactococcus Lactis
Length = 763
Score = 28.5 bits (62), Expect = 0.67
Identities = 21/80 (26%), Positives = 36/80 (44%), Gaps = 2/80 (2%)
Query: 141 KEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKESSQFIIEVPREALDLENVDRLVEY 200
K + LD+ + +I LLD +F F++G + + ++ E + EN+ Y
Sbjct: 64 KSSIELDWEIFWNIALQLLDFVPNFDFEIGKAFEYAKNSNLPQIEAE-MTTENIISAFYY 122
Query: 201 TLSPNNHSQSSLVYH-ISEG 219
L + LV H +SEG
Sbjct: 123 LLCTRRKTGMILVEHWVSEG 142
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 27.7 bits (60), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 182 IEVPREALDLENVDRLVEYTLSPNNHSQSSLVYHISEGSYIIHLIDD 228
IEVPREA + + E + ++ L H S+G+YI +IDD
Sbjct: 157 IEVPREARPIT----VYELLFIRHEGNELELEIHCSKGTYIRTIIDD 199
>pdb|1MHY|G Chain G, Methane Monooxygenase Hydroxylase
pdb|1MHZ|G Chain G, Methane Monooxygenase Hydroxylase
Length = 169
Score = 27.3 bits (59), Expect = 1.5
Identities = 15/54 (27%), Positives = 29/54 (52%)
Query: 102 SFLLENDKTIKDLNIQDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIK 155
S+ ++ D + I++ L LKT+ P++ +IT A ++ A++ I IK
Sbjct: 47 SYDIDVDYQYIERKIEEKLSVLKTEKLPVADLITKATTGEDAAAVEATWIAKIK 100
>pdb|1QC6|A Chain A, Evh1 Domain From EnaVASP-Like Protein In Complex With Acta
Peptide
pdb|1QC6|B Chain B, Evh1 Domain From EnaVASP-Like Protein In Complex With Acta
Peptide
Length = 130
Score = 26.2 bits (56), Expect = 3.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 140 QKEGVALDYALINDIKYNLLDNTFH 164
Q + V ++Y+++ +KYN TFH
Sbjct: 55 QDQQVVINYSIVKGLKYNQATPTFH 79
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 25.8 bits (55), Expect = 4.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 13 KNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPRKS 72
K+L +R+F ++ +N+ LD + VLD A + IFD + QL I +
Sbjct: 428 KSLYDRMFNWLVRRVNK----TLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNER 483
Query: 73 LE 74
L+
Sbjct: 484 LQ 485
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 25.8 bits (55), Expect = 4.4
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
Query: 17 ERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPRKSLE 74
E +F+ ++ INQ+ LD Q VLD A + IFD + QL I + L+
Sbjct: 435 EXMFLWMVIRINQQ----LDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQ 488
>pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1B7T|A Chain A, Myosin Digested By Papain
Length = 835
Score = 25.8 bits (55), Expect = 4.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 13 KNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPRKS 72
K+L +R+F ++ +N+ LD + VLD A + IFD + QL I +
Sbjct: 428 KSLYDRMFNWLVRRVNK----TLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNER 483
Query: 73 LE 74
L+
Sbjct: 484 LQ 485
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 25.8 bits (55), Expect = 4.4
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
Query: 17 ERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPRKSLE 74
E +F+ ++ INQ+ LD Q VLD A + IFD + QL I + L+
Sbjct: 432 EXMFLWMVIRINQQ----LDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQ 485
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 831
Score = 25.8 bits (55), Expect = 4.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 13 KNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPRKS 72
K+L +R+F ++ +N+ LD + VLD A + IFD + QL I +
Sbjct: 424 KSLYDRMFNWLVRRVNK----TLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNER 479
Query: 73 LE 74
L+
Sbjct: 480 LQ 481
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 25.8 bits (55), Expect = 4.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 13 KNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNPSQLAIKVPRKS 72
K+L +R+F ++ +N+ LD + VLD A + IFD + QL I +
Sbjct: 423 KSLYDRMFNWLVRRVNK----TLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNER 478
Query: 73 LE 74
L+
Sbjct: 479 LQ 480
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 25.4 bits (54), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 17 ERLFIDIINAINQKKRVALDHAQIDDIQY-NVLDNAFYFIFDVGNPSQLAIKVPRKSLE 74
ERLF I+ +N+ ALD + + +LD A + IF++ + QL I + L+
Sbjct: 435 ERLFRWILTRVNK----ALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQ 489
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 25.4 bits (54), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 17 ERLFIDIINAINQKKRVALDHAQIDDIQY-NVLDNAFYFIFDVGNPSQLAIKVPRKSLE 74
ERLF I+ +N+ ALD + + +LD A + IF++ + QL I + L+
Sbjct: 435 ERLFRWILTRVNK----ALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQ 489
>pdb|1JG7|A Chain A, T4 Phage Bgt In Complex With Udp And Mn2+
pdb|1JIX|A Chain A, T4 Phage Bgt In Complex With Ca2+
pdb|1JG6|A Chain A, T4 Phage Bgt In Complex With Udp
pdb|1JIV|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form Ii
pdb|1QKJ|A Chain A, T4 Phage B-Glucosyltransferase, Substrate Binding And
Proposed Catalytic Mechanism
pdb|1JIU|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form I
pdb|1JEJ|A Chain A, T4 Phage Apo Bgt
pdb|1C3J|A Chain A, T4 Phage Beta-Glucosyltransferase: Substrate Binding And
Proposed Catalytic Mechanism
pdb|2BGT| Mol_id: 1; Molecule: Beta-Glucosyltransferase; Chain: Null; Ec:
2.4.1.27
pdb|2BGU| Mol_id: 1; Molecule: Beta-Glucosyltransferase; Chain: Null; Ec:
2.4.1.27
pdb|1BGT| Beta-Glucosyltransferase (E.C.2.4.1.27) (Alpha-Carbons)
pdb|1BGU| Beta-Glucosyltransferase (E.C.2.4.1.27) (Alpha-Carbons)
Length = 351
Score = 25.4 bits (54), Expect = 5.7
Identities = 27/107 (25%), Positives = 44/107 (40%), Gaps = 14/107 (13%)
Query: 54 FIFDVGNPSQLAIKVPRKSLENDELPNTKKNIFNGLIRTIYGCIDDENS----FLLENDK 109
F+FD G + K +N + P TK +F G I + ++NS L+ DK
Sbjct: 202 FLFDTGLNIEFFGNAREKQFKNPKYPWTKAPVFTGKIP--MNMVSEKNSQAIAALIIGDK 259
Query: 110 TIKDLNIQDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKY 156
D I L +T A +I + + K + +IND ++
Sbjct: 260 NYNDNFI--TLRVWETMASDAVMLIDEEFDTK------HRIINDARF 298
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 25.4 bits (54), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 17 ERLFIDIINAINQKKRVALDHAQIDDIQY-NVLDNAFYFIFDVGNPSQLAIKVPRKSLE 74
ERLF I+ +N+ ALD + + +LD A + IF++ + QL I + L+
Sbjct: 435 ERLFRWILTRVNK----ALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQ 489
>pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|B Chain B, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|C Chain C, Refined Crystal Structure Of Canavalin From Jack Bean
Length = 178
Score = 25.0 bits (53), Expect = 7.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 191 LENVD--RLVEYTLSPN-----NHSQSSLVYHISEGSYIIHLID 227
LEN+ R++EY PN +HS S L+ + EG I+ L++
Sbjct: 35 LENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVN 78
>pdb|2CAV|A Chain A, Canavalin From Jack Bean
pdb|2CAU|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 25.0 bits (53), Expect = 7.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 191 LENVD--RLVEYTLSPN-----NHSQSSLVYHISEGSYIIHLID 227
LEN+ R++EY PN +HS S L+ + EG I+ L++
Sbjct: 80 LENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVN 123
>pdb|1CAU|A Chain A, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAX|A Chain A, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAX|C Chain C, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAX|E Chain E, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAV|A Chain A, Canavalin (Jack Bean 7s Vicilin)
pdb|1CAW|A Chain A, Canavalin (Jack Bean 7s Vicilin)
Length = 181
Score = 25.0 bits (53), Expect = 7.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 191 LENVD--RLVEYTLSPN-----NHSQSSLVYHISEGSYIIHLID 227
LEN+ R++EY PN +HS S L+ + EG I+ L++
Sbjct: 37 LENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVN 80
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.142 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,281,891
Number of Sequences: 13198
Number of extensions: 52277
Number of successful extensions: 114
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 26
length of query: 228
length of database: 2,899,336
effective HSP length: 85
effective length of query: 143
effective length of database: 1,777,506
effective search space: 254183358
effective search space used: 254183358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)