BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645300|ref|NP_207470.1|
methylated-DNA--protein-cysteine methyltransferase (dat1)
[Helicobacter pylori 26695]
(168 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1SFE| Ada O6-Methylguanine-Dna Methyltransferase From... 96 2e-21
pdb|1EH6|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase 87 8e-19
pdb|1QNT|A Chain A, X-Ray Structure Of Human O6alkylguanine... 87 1e-18
pdb|1EH8|A Chain A, Benzylated Human O6-Alkylguanine-Dna Al... 83 1e-17
pdb|1MGT|A Chain A, Crystal Structure Of O6-Methylguanine-D... 64 7e-12
>pdb|1SFE| Ada O6-Methylguanine-Dna Methyltransferase From Escherichia Coli
Length = 180
Score = 95.9 bits (237), Expect = 2e-21
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 45 NTPLKLSVQALERYFLGQLFEFNTPL----DLIGTFFQKQVWSALMTIPYGKTKSYDEIA 100
N P L Q R + L + +TPL D+ GT FQ+QVW AL TIP G+T SY ++A
Sbjct: 61 NAPADLMFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLA 120
Query: 101 KLINNPRSCRAVGNANRNNPISLIVPCHRVVRKNGTLGGYNGGIEVKKWLLEFESK 156
I P++ RAV +A N +++++PCHRVVR +G+L GY G+ K LL E++
Sbjct: 121 NAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGSLSGYRWGVSRKAQLLRREAE 176
>pdb|1EH6|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase
Length = 207
Score = 87.4 bits (215), Expect = 8e-19
Identities = 36/86 (41%), Positives = 57/86 (65%)
Query: 75 TFFQKQVWSALMTIPYGKTKSYDEIAKLINNPRSCRAVGNANRNNPISLIVPCHRVVRKN 134
+F ++ +W L + +G+ SY ++A L NP++ RAVG A R NP+ +++PCHRVV +
Sbjct: 93 SFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSS 152
Query: 135 GTLGGYNGGIEVKKWLLEFESKILNQ 160
G +G Y+GG+ VK+WLL E L +
Sbjct: 153 GAVGNYSGGLAVKEWLLAHEGHRLGK 178
>pdb|1QNT|A Chain A, X-Ray Structure Of Human O6alkylguanine-Dna
Alkyltransferase
Length = 176
Score = 87.0 bits (214), Expect = 1e-18
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 75 TFFQKQVWSALMTIPYGKTKSYDEIAKLINNPRSCRAVGNANRNNPISLIVPCHRVVRKN 134
+F ++ +W L + +G+ SY ++A L NP++ RAVG A R NP+ +++PCHRVV +
Sbjct: 93 SFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSS 152
Query: 135 GTLGGYNGGIEVKKWLLEFE 154
G +G Y+GG+ VK+WLL E
Sbjct: 153 GAVGNYSGGLAVKEWLLAHE 172
>pdb|1EH8|A Chain A, Benzylated Human O6-Alkylguanine-Dna Alkyltransferase
pdb|1EH7|A Chain A, Methylated Human O6-Alkylguanine-Dna Alkyltransferase
Length = 207
Score = 83.2 bits (204), Expect = 1e-17
Identities = 35/86 (40%), Positives = 56/86 (64%)
Query: 75 TFFQKQVWSALMTIPYGKTKSYDEIAKLINNPRSCRAVGNANRNNPISLIVPCHRVVRKN 134
+F ++ +W L + +G+ SY ++A L NP++ RAVG A R NP+ +++P HRVV +
Sbjct: 93 SFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPXHRVVCSS 152
Query: 135 GTLGGYNGGIEVKKWLLEFESKILNQ 160
G +G Y+GG+ VK+WLL E L +
Sbjct: 153 GAVGNYSGGLAVKEWLLAHEGHRLGK 178
>pdb|1MGT|A Chain A, Crystal Structure Of O6-Methylguanine-Dna
Methyltransferase From Hyperthermophilic Archaeon
Pyrococcus Kodakaraensis Strain Kod1
Length = 174
Score = 64.3 bits (155), Expect = 7e-12
Identities = 37/81 (45%), Positives = 52/81 (63%), Gaps = 4/81 (4%)
Query: 75 TFFQKQVWSALM-TIPYGKTKSYDEIAKLINNPRSCRAVGNANRNNPISLIVPCHRVVRK 133
T F+K+V+ L + G +Y ++AK +N S RAVG A + NP ++VPCHRVV
Sbjct: 90 TPFEKKVYEWLTKNVKRGSVITYGDLAKALNT--SPRAVGGAMKRNPYPIVVPCHRVVAH 147
Query: 134 NGTLGGYNGGIEVKKWLLEFE 154
+G +G Y+ GIE KK+LLE E
Sbjct: 148 DG-IGYYSSGIEEKKFLLEIE 167
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,048,803
Number of Sequences: 13198
Number of extensions: 39947
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 5
length of query: 168
length of database: 2,899,336
effective HSP length: 82
effective length of query: 86
effective length of database: 1,817,100
effective search space: 156270600
effective search space used: 156270600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)