BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644699|ref|NP_206869.1| urease accessory protein
(ureF) [Helicobacter pylori 26695]
(254 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Prote... 30 0.27
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric ... 27 3.0
pdb|1TND|A Chain A, Transducin (Alpha Subunit) Complexed Wi... 27 3.0
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 30.0 bits (66), Expect = 0.27
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 173 ELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLC 231
+LKKA+++Y+ A N + C+ V SQ + QK+ Q + K EL+ + C
Sbjct: 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLF--------QYLSKACELNSGNGC 60
>pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9) (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9) (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 26.6 bits (57), Expect = 3.0
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 53 GLETYIQQKKVTNK-----ESALEYLKANLSSQF-----LYTEMLSLKLTY-ESALQQDL 101
G T ++Q K+ ++ E LE++ + + M +L + Y +SA Q D
Sbjct: 16 GKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDA 75
Query: 102 KKILGVEEVIMLSTSPMELRLANQKL 127
+K++ + + I T P E+ Q+L
Sbjct: 76 RKLMHMADTIEEGTMPKEMSDIIQRL 101
>pdb|1TND|A Chain A, Transducin (Alpha Subunit) Complexed With The
Nonhydrolyzable Gtp Analogue Gtp Gamma S
pdb|1TAD|C Chain C, Transducin-Alpha (Gt-Alpha-Gdp-Alf, T-Alpha-Gdp-Alf)
Complexed With Gdp And Aluminum Fluoride
pdb|1TAD|A Chain A, Transducin-Alpha (Gt-Alpha-Gdp-Alf, T-Alpha-Gdp-Alf)
Complexed With Gdp And Aluminum Fluoride
pdb|1TAD|B Chain B, Transducin-Alpha (Gt-Alpha-Gdp-Alf, T-Alpha-Gdp-Alf)
Complexed With Gdp And Aluminum Fluoride
pdb|1TND|B Chain B, Transducin (Alpha Subunit) Complexed With The
Nonhydrolyzable Gtp Analogue Gtp Gamma S
pdb|1TND|C Chain C, Transducin (Alpha Subunit) Complexed With The
Nonhydrolyzable Gtp Analogue Gtp Gamma S
pdb|1TAG| Transducin-Alpha Complexed With Gdp And Magnesium (Gt-Alpha-Gdp,
T-Alpha-Gdp)
Length = 324
Score = 26.6 bits (57), Expect = 3.0
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 53 GLETYIQQKKVTNK-----ESALEYLKANLSSQF-----LYTEMLSLKLTY-ESALQQDL 101
G T ++Q K+ ++ E LE++ + + M +L + Y +SA Q D
Sbjct: 15 GKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDA 74
Query: 102 KKILGVEEVIMLSTSPMELRLANQKL 127
+K++ + + I T P E+ Q+L
Sbjct: 75 RKLMHMADTIEEGTMPKEMSDIIQRL 100
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.129 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,275,546
Number of Sequences: 13198
Number of extensions: 45405
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 3
length of query: 254
length of database: 2,899,336
effective HSP length: 86
effective length of query: 168
effective length of database: 1,764,308
effective search space: 296403744
effective search space used: 296403744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)