BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645302|ref|NP_207472.1| hypothetical protein
[Helicobacter pylori 26695]
         (36 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1ESM|A  Chain A, Structural Basis For The Feedback Regul...    23  5.6

>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
 pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
 pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
 pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
 pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
 pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
 pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
 pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
           Escherichia Coli Pantothenate Kinase By Coenzyme A
          Length = 316

 Score = 23.5 bits (49), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 2   TLWRLSNWLNELRN-LPVSE 20
           TLW+  NWLN  +N LP  E
Sbjct: 276 TLWKEINWLNLKQNILPTRE 295



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.316    0.130    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,089
Number of Sequences: 13198
Number of extensions: 4349
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 1
length of query: 36
length of database: 2,899,336
effective HSP length: 12
effective length of query: 24
effective length of database: 2,740,960
effective search space: 65783040
effective search space used: 65783040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)