BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645303|ref|NP_207473.1| lipopolysaccharide
biosynthesis protein (wbpB) [Helicobacter pylori 26695]
(289 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And T... 38 0.002
pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Red... 38 0.002
pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase >gi|209... 32 0.085
pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fruc... 32 0.085
pdb|1EVJ|C Chain C, Crystal Structure Of Glucose-Fructose O... 32 0.085
pdb|1JTR|B Chain B, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX >gi|21... 28 1.6
pdb|1NFD|B Chain B, An Alpha-Beta T Cell Receptor (Tcr) Het... 27 2.1
pdb|1AMX| Collagen-Binding Domain From A Staphylococcus A... 27 2.1
pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant ... 27 3.6
pdb|1BEC| Beta Chain Of A T Cell Antigen Receptor >gi|455... 26 4.7
pdb|1L0Y|A Chain A, T Cell Receptor Beta Chain Complexed Wi... 26 4.7
pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furios... 26 4.7
>pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And The Enzyme-Nadh
Complex
pdb|1LC3|A Chain A, Crystal Structure Of A Biliverdin Reductase
Enzyme-Cofactor Complex
Length = 294
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/65 (33%), Positives = 36/65 (54%), Gaps = 5/65 (7%)
Query: 68 KEINYLSVCTPTHTHFDHIRFGLRNGMHVICEKPLVLDPGEIQELKDL-----EVKHQKR 122
+EI+ +C+ + +H D+IR L+ G HV+ E P+ L QEL +L V H++
Sbjct: 64 QEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123
Query: 123 VFSLL 127
V L+
Sbjct: 124 VELLM 128
>pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Reductase At 1.4 A
Length = 295
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/65 (33%), Positives = 36/65 (54%), Gaps = 5/65 (7%)
Query: 68 KEINYLSVCTPTHTHFDHIRFGLRNGMHVICEKPLVLDPGEIQELKDL-----EVKHQKR 122
+EI+ +C+ + +H D+IR L+ G HV+ E P+ L QEL +L V H++
Sbjct: 65 QEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 124
Query: 123 VFSLL 127
V L+
Sbjct: 125 VELLM 129
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase
pdb|1OFG|B Chain B, Glucose-Fructose Oxidoreductase
pdb|1OFG|C Chain C, Glucose-Fructose Oxidoreductase
pdb|1OFG|D Chain D, Glucose-Fructose Oxidoreductase
pdb|1OFG|E Chain E, Glucose-Fructose Oxidoreductase
pdb|1OFG|F Chain F, Glucose-Fructose Oxidoreductase
Length = 381
Score = 32.0 bits (71), Expect = 0.085
Identities = 20/84 (23%), Positives = 38/84 (44%), Gaps = 4/84 (4%)
Query: 53 IEDFEKHLEQSKDMGKEINYLSVCTPTHTHFDHIRFGLRNGMHVICEKPLVLDPGEIQEL 112
I D+ + +KD +I+ + + P H + + G HV+CEKP+ + Q +
Sbjct: 84 IYDYSNFDKIAKD--PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRM 141
Query: 113 KDLEVKHQKRVFSLLPLRLHCDTL 136
D K++ ++ R H D +
Sbjct: 142 IDAAKAANKKL--MIGYRCHYDPM 163
>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|C Chain C, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|D Chain D, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|E Chain E, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|I Chain I, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|K Chain K, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|F Chain F, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|G Chain G, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|H Chain H, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|J Chain J, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|L Chain L, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6C|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6C|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6A|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6A|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6B|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6B|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
Length = 433
Score = 32.0 bits (71), Expect = 0.085
Identities = 20/84 (23%), Positives = 38/84 (44%), Gaps = 4/84 (4%)
Query: 53 IEDFEKHLEQSKDMGKEINYLSVCTPTHTHFDHIRFGLRNGMHVICEKPLVLDPGEIQEL 112
I D+ + +KD +I+ + + P H + + G HV+CEKP+ + Q +
Sbjct: 136 IYDYSNFDKIAKD--PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRM 193
Query: 113 KDLEVKHQKRVFSLLPLRLHCDTL 136
D K++ ++ R H D +
Sbjct: 194 IDAAKAANKKL--MIGYRCHYDPM 215
>pdb|1EVJ|C Chain C, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|D Chain D, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
Length = 352
Score = 32.0 bits (71), Expect = 0.085
Identities = 20/84 (23%), Positives = 38/84 (44%), Gaps = 4/84 (4%)
Query: 53 IEDFEKHLEQSKDMGKEINYLSVCTPTHTHFDHIRFGLRNGMHVICEKPLVLDPGEIQEL 112
I D+ + +KD +I+ + + P H + + G HV+CEKP+ + Q +
Sbjct: 55 IYDYSNFDKIAKD--PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRM 112
Query: 113 KDLEVKHQKRVFSLLPLRLHCDTL 136
D K++ ++ R H D +
Sbjct: 113 IDAAKAANKKL--MIGYRCHYDPM 134
>pdb|1JTR|B Chain B, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1JTR|D Chain D, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1TCR|B Chain B, Murine T-Cell Antigen Receptor 2c Clone
pdb|1G6R|B Chain B, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|D Chain D, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|2CKB|B Chain B, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|D Chain D, Structure Of The 2cKBDEV8 COMPLEX
Length = 237
Score = 27.7 bits (60), Expect = 1.6
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 181 GLATQMGV-----NIFDTLIYLFGSVKDKVINKEEPD--CVGGILFLEHAKIRWFFSINP 233
G T++ V N+ + LF K ++ NK++ C+ F +H ++ W+ +
Sbjct: 102 GAGTRLSVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE 161
Query: 234 EHMGVAKEKVYHK 246
H GV+ + +K
Sbjct: 162 VHSGVSTDPQAYK 174
>pdb|1NFD|B Chain B, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|D Chain D, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 239
Score = 27.3 bits (59), Expect = 2.1
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 189 NIFDTLIYLFGSVKDKVINKEEPD--CVGGILFLEHAKIRWFFSINPEHMGVAKEKVYHK 246
N+ + LF K ++ NK++ C+ F +H ++ W+ + H GV+ + +K
Sbjct: 117 NVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYK 176
>pdb|1AMX| Collagen-Binding Domain From A Staphylococcus Aureus Adhesin
Length = 180
Score = 27.3 bits (59), Expect = 2.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 215 GGILFLEHAKIRWFFSINPEHMGVAKEKVYHKMILEGEEVNLT 257
G +L + +RWF +IN E V+K+ I G++++L+
Sbjct: 40 GDMLPEDTTHVRWFLNINNEKSYVSKDITIKDQIQGGQQLDLS 82
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 26.6 bits (57), Expect = 3.6
Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Query: 228 FFSINPEHMGVAKEKVYHKMILEGEEV-NLTQSFDNLYI 265
F +++PE M + ++ K++ EGE V + DN Y+
Sbjct: 42 FKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV 80
>pdb|1BEC| Beta Chain Of A T Cell Antigen Receptor
pdb|1SBB|A Chain A, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SBB|C Chain C, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1JCK|A Chain A, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|C Chain C, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1L0X|A Chain A, Tcr Beta Chain Complexed With Streptococal Superantigen
Spea
pdb|1L0X|C Chain C, Tcr Beta Chain Complexed With Streptococal Superantigen
Spea
Length = 238
Score = 26.2 bits (56), Expect = 4.7
Identities = 13/54 (24%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Query: 195 IYLFGSVKDKVINKEEPD--CVGGILFLEHAKIRWFFSINPEHMGVAKEKVYHK 246
+ LF K ++ NK++ C+ F +H ++ W+ + H GV+ + +K
Sbjct: 123 VSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYK 176
>pdb|1L0Y|A Chain A, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
pdb|1L0Y|C Chain C, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
Length = 236
Score = 26.2 bits (56), Expect = 4.7
Identities = 13/54 (24%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Query: 195 IYLFGSVKDKVINKEEPD--CVGGILFLEHAKIRWFFSINPEHMGVAKEKVYHK 246
+ LF K ++ NK++ C+ F +H ++ W+ + H GV+ + +K
Sbjct: 123 VSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYK 176
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 26.2 bits (56), Expect = 4.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 51 TNIEDFEKHLEQSKDMGKEINYLSVCTPTHTH 82
+ +E+F+K L +S+ + KE+ + P +TH
Sbjct: 57 SELENFKKELAKSRGLPKEVIEIMEALPKNTH 88
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,745,937
Number of Sequences: 13198
Number of extensions: 72963
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 12
length of query: 289
length of database: 2,899,336
effective HSP length: 87
effective length of query: 202
effective length of database: 1,751,110
effective search space: 353724220
effective search space used: 353724220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)