BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645305|ref|NP_207475.1| hypothetical protein
[Helicobacter pylori 26695]
         (168 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1L1Y|A  Chain A, The Crystal Structure And Catalytic Mec...    27  1.6
pdb|3GCB|    Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDEL...    24  7.8
pdb|1YGP|A  Chain A, Phosphorylated Form Of Yeast Glycogen P...    24  7.8
pdb|1A6R|    Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a          24  7.8

>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
 pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
           Cellobiohydrolase Cels, The Major Enzymatic Component Of
           The Clostridium Thermocellum Cellulosome
          Length = 678

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 55  YSYYVWLVALIAALLSNLLFNPKGRSVGYLMIETW 89
           +SYYVWL     A+  NL  N  G    + ++E W
Sbjct: 89  FSYYVWL----EAMYGNLTGNWSGVETAWKVMEDW 119



>pdb|3GCB|   Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
          Length = 470

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 18/69 (26%), Positives = 29/69 (41%), Gaps = 5/69 (7%)

Query: 37  RIFYDINGSASDPLFDPKYSYYVWLVALIAALLSNLLFNPKGRSVGYLMIETWQGFPKFF 96
           R+F  +  + S P+ + K S   WL A    L  N+L       +     E  Q +  F+
Sbjct: 68  RVFNTVVSTDSTPVTNQKSSGRAWLFAATNQLRLNVL-----SELNLKEFELSQAYLFFY 122

Query: 97  KAIFKARFF 105
             + KA +F
Sbjct: 123 DKLEKANYF 131



>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site.
 pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site
          Length = 879

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 52  DPKYSYYVWLVALIAALLSNLLFNPK 77
           DPK  YY+ L  L+   L N L N K
Sbjct: 95  DPKRVYYLSLEFLMGRALDNALINMK 120



>pdb|1A6R|   Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
          Length = 471

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 18/69 (26%), Positives = 29/69 (41%), Gaps = 5/69 (7%)

Query: 37  RIFYDINGSASDPLFDPKYSYYVWLVALIAALLSNLLFNPKGRSVGYLMIETWQGFPKFF 96
           R+F  +  + S P+ + K S   WL A    L  N+L       +     E  Q +  F+
Sbjct: 68  RVFNTVVSTDSTPVTNQKSSGRAWLFAATNQLRLNVL-----SELNLKEFELSQAYLFFY 122

Query: 97  KAIFKARFF 105
             + KA +F
Sbjct: 123 DKLEKANYF 131



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.144    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,046,481
Number of Sequences: 13198
Number of extensions: 40066
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 2,899,336
effective HSP length: 82
effective length of query: 86
effective length of database: 1,817,100
effective search space: 156270600
effective search space used: 156270600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)