BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645306|ref|NP_207476.1| hypothetical protein
[Helicobacter pylori 26695]
(126 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MAB|A Chain A, Rat Liver F1-Atpase 25 2.6
pdb|1BZW|A Chain A, Peanut Lectin Complexed With C-Lactose ... 25 3.4
pdb|2PEL|A Chain A, Peanut Lectin >gi|1942900|pdb|2PEL|B Ch... 25 3.4
pdb|1INF| Influenza Virus BLEE40 NEURAMINIDASE COMPLEXED ... 24 4.5
pdb|1B9V|A Chain A, Novel Aromatic Inhibitors Of Influenza ... 24 4.5
pdb|1MDA|H Chain H, Methylamine Dehydrogenase (E.C.1.4.99.3... 23 10.0
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 25.0 bits (53), Expect = 2.6
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 40 VAIASPKIEARGELGKFIGGGVGGFVGDKMGGFVGGAIG------GYIGSEIGDRVEDYI 93
V + K+ G++ K G V VGD++ G V A+G G +GS+I RV
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKA 133
Query: 94 RGVDREPQNKEP 105
G+ +EP
Sbjct: 134 PGIIPRISVREP 145
>pdb|1BZW|A Chain A, Peanut Lectin Complexed With C-Lactose
pdb|1BZW|B Chain B, Peanut Lectin Complexed With C-Lactose
pdb|1BZW|C Chain C, Peanut Lectin Complexed With C-Lactose
pdb|1BZW|D Chain D, Peanut Lectin Complexed With C-Lactose
Length = 232
Score = 24.6 bits (52), Expect = 3.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 57 IGGGVGGFVGDKMGG-FVGGAIGGYIGSEIGDRVEDYIRGVD 97
IGGG G K G FVG Y SE D D++ G+D
Sbjct: 101 IGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHV-GID 141
>pdb|2PEL|A Chain A, Peanut Lectin
pdb|2PEL|B Chain B, Peanut Lectin
pdb|2PEL|C Chain C, Peanut Lectin
pdb|2PEL|D Chain D, Peanut Lectin
pdb|2TEP|A Chain A, Peanut Lectin Complexed With T-Antigenic Disaccharide
pdb|2TEP|B Chain B, Peanut Lectin Complexed With T-Antigenic Disaccharide
pdb|2TEP|C Chain C, Peanut Lectin Complexed With T-Antigenic Disaccharide
pdb|2TEP|D Chain D, Peanut Lectin Complexed With T-Antigenic Disaccharide
pdb|1CR7|A Chain A, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CR7|B Chain B, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CR7|C Chain C, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CR7|D Chain D, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CR7|E Chain E, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CR7|F Chain F, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CR7|G Chain G, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CR7|H Chain H, Peanut Lectin-Lactose Complex Monoclinic Form
pdb|1CIW|A Chain A, Peanut Lectin Complexed With N-Acetyllactosamine
pdb|1CIW|B Chain B, Peanut Lectin Complexed With N-Acetyllactosamine
pdb|1CIW|C Chain C, Peanut Lectin Complexed With N-Acetyllactosamine
pdb|1CIW|D Chain D, Peanut Lectin Complexed With N-Acetyllactosamine
pdb|1QF3|A Chain A, Peanut Lectin Complexed With Methyl-Beta-Galactose
pdb|1QF3|B Chain B, Peanut Lectin Complexed With Methyl-Beta-Galactose
pdb|1QF3|C Chain C, Peanut Lectin Complexed With Methyl-Beta-Galactose
pdb|1QF3|D Chain D, Peanut Lectin Complexed With Methyl-Beta-Galactose
pdb|1CQ9|A Chain A, Peanut Lectin-Triclinic Form
pdb|1CQ9|B Chain B, Peanut Lectin-Triclinic Form
pdb|1CQ9|C Chain C, Peanut Lectin-Triclinic Form
pdb|1CQ9|D Chain D, Peanut Lectin-Triclinic Form
Length = 236
Score = 24.6 bits (52), Expect = 3.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 57 IGGGVGGFVGDKMGG-FVGGAIGGYIGSEIGDRVEDYIRGVD 97
IGGG G K G FVG Y SE D D++ G+D
Sbjct: 101 IGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHV-GID 141
>pdb|1INF| Influenza Virus BLEE40 NEURAMINIDASE COMPLEXED WITH Bana113
Inhibitor
Length = 390
Score = 24.3 bits (51), Expect = 4.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 41 AIASPKIEARGELGKFIGGGVGGFVGDKMGGFVG 74
+IA P E+ G+ K++GG GGFV +M +G
Sbjct: 256 SIAGP-CESNGD--KWLGGIKGGFVHQRMASKIG 286
>pdb|1B9V|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In Teh Active Site
pdb|1B9T|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
pdb|1INV| Influenza BLEE40 NEURAMINIDASE (SIALIDASE) (E.C.3.2.1.18)
Complexed With Epana Inhibitor (4-Acetamido-
2,4-Dideoxy-D-Glycero-Alpha-D-Galacto-1-Octopyranosyl)
Phosphonic Acid
pdb|1IVB| Influenza Virus BLEE40 NEURAMINIDASE (SIALIDASE) (E.C.3.2.1.18)
Complexed With Bana105 Inhibitor
(4-(Acetylamino)-3-Hydroxy-5-Nitrobenzoic Acid)
pdb|1B9S|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
Length = 390
Score = 24.3 bits (51), Expect = 4.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 41 AIASPKIEARGELGKFIGGGVGGFVGDKMGGFVG 74
+IA P E+ G+ K++GG GGFV +M +G
Sbjct: 256 SIAGP-CESNGD--KWLGGIKGGFVHQRMASKIG 286
>pdb|1MDA|H Chain H, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin
pdb|1MDA|J Chain J, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin
Length = 368
Score = 23.1 bits (48), Expect = 10.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 60 GVGGFVGDKMGGFVGGAIGGYIGSE 84
G G +G +G F+ A+ G+ GS+
Sbjct: 54 GCGVTLGHSLGAFLSLAVAGHSGSD 78
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.145 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 812,591
Number of Sequences: 13198
Number of extensions: 34100
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 6
length of query: 126
length of database: 2,899,336
effective HSP length: 78
effective length of query: 48
effective length of database: 1,869,892
effective search space: 89754816
effective search space used: 89754816
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)