BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645307|ref|NP_207477.1| UDP-N-acetylglucosamine
pyrophosphorylase (glmU) [Helicobacter pylori 26695]
(433 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of ... 297 2e-81
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-... 284 1e-77
pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Ace... 283 2e-77
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamin... 164 2e-41
pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Comple... 40 7e-04
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Man... 37 0.006
pdb|1TDT|B Chain B, Three-Dimensional Structure Of Tetrahyd... 36 0.007
pdb|1KGQ|A Chain A, Crystal Structure Of Tetrahydrodipicoli... 36 0.007
pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I) >g... 35 0.021
pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp 33 0.063
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp 33 0.082
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With Th... 33 0.082
pdb|1XAT| Structure Of The Hexapeptide Xenobiotic Acetylt... 33 0.082
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp 32 0.11
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With Th... 32 0.11
pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp 32 0.18
pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 29 0.90
pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 29 0.90
pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complex... 29 1.2
pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complex... 29 1.2
pdb|1BGF| Stat-4 N-Domain 29 1.2
pdb|1JR5|A Chain A, Solution Structure Of The Anti-Sigma Fa... 28 2.6
pdb|1INI|A Chain A, Crystal Structure Of 4-Diphosphocytidyl... 27 4.5
pdb|1B1Z|A Chain A, Streptococcal Pyrogenic Exotoxin A1 >gi... 26 7.6
pdb|1FNU|A Chain A, Structure Of Streptococcal Pyrogenic Ex... 26 7.6
pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Ac... 26 10.0
>pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
Length = 456
Score = 297 bits (760), Expect = 2e-81
Identities = 173/448 (38%), Positives = 270/448 (59%), Gaps = 32/448 (7%)
Query: 2 LSVIILAAGKGTRMRSSLPKTLHTICGEPMLFYILETAFSI-SDDVHLILHHQQERIKEA 60
+SV+ILAAGKGTRM S LPK LHT+ G+ M+ ++++ A + + VHL+ H + +K+A
Sbjct: 6 MSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQA 65
Query: 61 VLERFKGVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNADMPLITKDALAPLLE 120
+ + + + + GTG A+ Q P E +L+L D+PLI+ + L L +
Sbjct: 66 LKDDNLNWVLQAEQL----GTGHAMQQA--APFFADDEDILMLYGDVPLISVETLQRLRD 119
Query: 121 SK-NNAIGLL--HLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFERDF 177
+K IGLL L DP GYGR+ EN +V IVE KDA DE+++I+ +N G+
Sbjct: 120 AKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGAD 179
Query: 178 LEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFL-GVNSQTERAKAEEIM 236
++++L KL + NAQ EYY+TD+IAL E I A+ + + GVN++ + ++ E +
Sbjct: 180 MKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVY 239
Query: 237 LERLRKNAMDLGVVMQLP------------NSIYLEKGVSFKGECVLEQGVRLIGNCLIE 284
+ + GV+++ P + ++ V +G L V++ C+I+
Sbjct: 240 QSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK 299
Query: 285 NA------HIKAYSVIEESQIVNS-SVGPFAHARPKSVICN-SHVGNFVETKNAKL-QGT 335
N+ I Y+V+E++ + + ++GPFA RP + + +HVGNFVE K A+L +G+
Sbjct: 300 NSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGS 359
Query: 336 KAGHLSYLGDCEIGKNTNVGAGVITCNYDGKKKHQTIIGENVFIGSDSQLVAPINIGSNV 395
KAGHL+YLGD EIG N N+GAG ITCNYDG K +TIIG++VF+GSD+QLVAP+ +G
Sbjct: 360 KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGA 419
Query: 396 LIGSGTTITKDIPSGSLSLSRAPQTNIE 423
I +GTT+T+++ +L++SR PQT E
Sbjct: 420 TIAAGTTVTRNVGENALAISRVPQTQKE 447
>pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
Length = 459
Score = 284 bits (727), Expect = 1e-77
Identities = 175/445 (39%), Positives = 257/445 (57%), Gaps = 34/445 (7%)
Query: 5 IILAAGKGTRMRSSLPKTLHTICGEPMLFYILETAFSISDDVHL-ILHHQQERIKEAVLE 63
IILAAGKGTRM+S LPK LH + G ML ++ + +I + + ++ H+ E ++E +
Sbjct: 6 IILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG 65
Query: 64 RFKGVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNADMPLITKDALAPLLE--- 120
+ + V Q+ GTG A+M + + L++ D PLIT ++L L++
Sbjct: 66 QTEFVTQSEQL-----GTGHAVMMTEPI-LEGLSGHTLVIAGDTPLITGESLKNLIDFHI 119
Query: 121 -SKNNAIGLLHLAD-PKGYGRVVL-ENHQVKKIVEEKDANDEEKEIKSVNAGVYGFERDF 177
KN A L D P GYGR+V +N +V +IVE+KDA D EK+IK +N G Y F+ +
Sbjct: 120 NHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNER 179
Query: 178 LEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKE-ECFLGVNSQTERAKAEEIM 236
L + L ++ NAQ EYY+TD+I + E + A LK+ + LGVN + A AE +M
Sbjct: 180 LFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVM 239
Query: 237 LERLRKNAMDLGVVMQLPNSIYLEKGVSFKGECVLEQGVRLIGNCLIE------------ 284
R+ M GV P + Y++ V E +E V L G I
Sbjct: 240 RRRINHKHMVNGVSFVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV 299
Query: 285 NAHIKAYSVIEESQIVNSSV------GPFAHARPKSVI-CNSHVGNFVETKNAKL-QGTK 336
++ I A +VI S I SSV GP+AH RP S + H+GNFVE K + + + TK
Sbjct: 300 DSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTK 359
Query: 337 AGHLSYLGDCEIGKNTNVGAGVITCNYDGKKKHQTIIGENVFIGSDSQLVAPINIGSNVL 396
AGHL+Y+G+CE+G N N GAG IT NYDGK K++T+IG NVF+GS+S ++AP+ +G N L
Sbjct: 360 AGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSL 419
Query: 397 IGSGTTITKDIPSGSLSLSRAPQTN 421
+G+G+TITKD+P+ ++++ R Q N
Sbjct: 420 VGAGSTITKDVPADAIAIGRGRQIN 444
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
Length = 468
Score = 283 bits (725), Expect = 2e-77
Identities = 175/445 (39%), Positives = 258/445 (57%), Gaps = 34/445 (7%)
Query: 5 IILAAGKGTRMRSSLPKTLHTICGEPMLFYILETAFSISDDVHL-ILHHQQERIKEAVLE 63
IILAAGKGTRM+S LPK LH + G ML ++ + +I + + ++ H+ E ++E +
Sbjct: 15 IILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG 74
Query: 64 RFKGVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNADMPLITKDALAPLLE--- 120
+ + V Q+ GTG A+M + + L++ D PLIT ++L L++
Sbjct: 75 QTEFVTQSEQL-----GTGHAVMMTEPI-LEGLSGHTLVIAGDTPLITGESLKNLIDFHI 128
Query: 121 -SKNNAIGLLHLAD-PKGYGRVVL-ENHQVKKIVEEKDANDEEKEIKSVNAGVYGFERDF 177
KN A L D P GYGR+V +N +V +IVE+KDA D EK+IK +N G Y F+ +
Sbjct: 129 NHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNER 188
Query: 178 LEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKE-ECFLGVNSQTERAKAEEIM 236
L + L ++ NAQ EYY+TD+I + E + A LK+ + LGVN + A AE +M
Sbjct: 189 LFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVM 248
Query: 237 LERLRKNAMDLGVVMQLPNSIYLEKGVSFKGECVLEQGVRLIGNCLIE------------ 284
R+ M GV P + Y++ V E +E V L G I
Sbjct: 249 RRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVV 308
Query: 285 NAHIKAYSVIEESQIVNSSV------GPFAHARPKSVI-CNSHVGNFVETKNAKL-QGTK 336
++ I A +VI S I SSV GP+AH RP S + H+GNFVE K + + + TK
Sbjct: 309 DSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTK 368
Query: 337 AGHLSYLGDCEIGKNTNVGAGVITCNYDGKKKHQTIIGENVFIGSDSQLVAPINIGSNVL 396
AGHL+Y+G+CE+G N N GAG IT NYDGK K++T+IG+NVF+GS+S ++AP+ +G N L
Sbjct: 369 AGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSL 428
Query: 397 IGSGTTITKDIPSGSLSLSRAPQTN 421
+G+G+TITKD+P+ ++++ R Q N
Sbjct: 429 VGAGSTITKDVPADAIAIGRGRQIN 453
>pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
Length = 331
Score = 164 bits (414), Expect = 2e-41
Identities = 108/331 (32%), Positives = 182/331 (54%), Gaps = 30/331 (9%)
Query: 2 LSVIILAAGKGTRMRSSLPKTLHTICGEPMLFYILETAFSI-SDDVHLILHHQQERIKEA 60
+SV+ILAAGKGTRM S LPK LHT+ G+ M+ ++++ A + + VHL+ H + +K+A
Sbjct: 6 MSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQA 65
Query: 61 VLERFKGVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNADMPLITKDALAPLLE 120
+ + + + + GTG A+ Q P E +L+L D+PLI+ + L L +
Sbjct: 66 LKDDNLNWVLQAEQL----GTGHAMQQA--APFFADDEDILMLYGDVPLISVETLQRLRD 119
Query: 121 SK-NNAIGLL--HLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFERDF 177
+K IGLL L DP GYGR+ EN +V IVE KDA DE+++I+ +N G+
Sbjct: 120 AKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGAD 179
Query: 178 LEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFL-GVNSQTERAKAEEIM 236
++++L KL + NAQ EYY+TD+IAL E I A+ + + GVN++ + ++ E +
Sbjct: 180 MKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVY 239
Query: 237 LERLRKNAMDLGVVMQLP------------NSIYLEKGVSFKGECVLEQGVRLIGNCLIE 284
+ + GV+++ P + ++ V +G L V++ C+I+
Sbjct: 240 QSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK 299
Query: 285 NA------HIKAYSVIEESQIVNS-SVGPFA 308
N+ I Y+V+E++ + + ++GPFA
Sbjct: 300 NSVIGDDCEISPYTVVEDANLAAACTIGPFA 330
>pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
Length = 203
Score = 39.7 bits (91), Expect = 7e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 373 IGENVFIGSDSQLVAPINIGSNVLIGSGTTITKDIP 408
IG NV+IGS + + IG N +IG+G+ +TKDIP
Sbjct: 134 IGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIP 169
>pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
Length = 245
Score = 36.6 bits (83), Expect = 0.006
Identities = 62/259 (23%), Positives = 105/259 (39%), Gaps = 33/259 (12%)
Query: 3 SVIILAAGKGTRMRSSLP-KTLHTICGEPMLFYILETAFSISDDVHLILHHQQERIKEAV 61
+VI++ A G+ S LP K L I G+PM+ ++ E A ++ + + R+++AV
Sbjct: 3 AVIVIPARYGS---SRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAV 59
Query: 62 LERFKGVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNADMPLITKDALAPLLES 121
+ F G T+ + SGT + K + + + L D P+I + LL+
Sbjct: 60 -QAFGGKAIMTRN-DHESGTDRLVEVMHKV----EADIYINLQGDEPMIRPRDVETLLQG 113
Query: 122 KNN-----------AIGLLHLADPKGYGRVVLENHQVKKIVEEKDA---NDEEKEIKSVN 167
+ AI A+P +VV+ Q + EK +
Sbjct: 114 MRDDPALPVATLCHAISAAEAAEPSTV-KVVVNTRQDALYFSRSPIPYPRNAEKARYLKH 172
Query: 168 AGVYGFERDFLEKY--LPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNS 225
G+Y + RD L+ Y LP+ + A+ L L+ GIN F GV++
Sbjct: 173 VGIYAYRRDVLQNYSQLPESMPEQAESLEQLR-LMNAGINIR-----TFEVAATGPGVDT 226
Query: 226 QTERAKAEEIMLERLRKNA 244
K +M + L +NA
Sbjct: 227 PACLEKVRALMAQELAENA 245
>pdb|1TDT|B Chain B, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
pdb|1TDT|C Chain C, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
pdb|1TDT|A Chain A, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
Length = 259
Score = 36.2 bits (82), Expect = 0.007
Identities = 27/97 (27%), Positives = 48/97 (48%), Gaps = 7/97 (7%)
Query: 333 QGTKAGHLSYLGDC-EIGKNTNVGAGV-ITCNYDGKKKHQTIIGENVFIGSDSQLVAPIN 390
+GT + +G C +IGKN ++ GV I + + + TII +N FIG+ S++V +
Sbjct: 136 EGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVI 195
Query: 391 IGSNVLIGSG-----TTITKDIPSGSLSLSRAPQTNI 422
+ +I G +T D +G + R P ++
Sbjct: 196 VEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSV 232
>pdb|1KGQ|A Chain A, Crystal Structure Of Tetrahydrodipicolinate N-
Succinyltransferase In Complex With L-2-Aminopimelate
And Succinamide-Coa
pdb|3TDT| Complex Of Tetrahydrodipicolinate N-Succinyltransferase With
2-Amino-6-Oxopimelate And Coenzyme A
pdb|1KGT|A Chain A, Crystal Structure Of Tetrahydrodipicolinate N-
Succinyltransferase In Complex With Pimelate And
Succinyl- Coa
Length = 274
Score = 36.2 bits (82), Expect = 0.007
Identities = 27/97 (27%), Positives = 48/97 (48%), Gaps = 7/97 (7%)
Query: 333 QGTKAGHLSYLGDC-EIGKNTNVGAGV-ITCNYDGKKKHQTIIGENVFIGSDSQLVAPIN 390
+GT + +G C +IGKN ++ GV I + + + TII +N FIG+ S++V +
Sbjct: 136 EGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVI 195
Query: 391 IGSNVLIGSG-----TTITKDIPSGSLSLSRAPQTNI 422
+ +I G +T D +G + R P ++
Sbjct: 196 VEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSV 232
>pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I)
pdb|1KK6|C Chain C, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|D Chain D, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|A Chain A, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|F Chain F, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KHR|D Chain D, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK6|A Chain A, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|B Chain B, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|C Chain C, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK5|C Chain C, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|D Chain D, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|E Chain E, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|A Chain A, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|B Chain B, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|C Chain C, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|B Chain B, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|E Chain E, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|F Chain F, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|A Chain A, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|F Chain F, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK4|E Chain E, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
Length = 209
Score = 34.7 bits (78), Expect = 0.021
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 368 KHQTIIGENVFIGSDSQLVAPINIGSNVLIGSGTTITKDI 407
K TIIG +V+IG D ++ + IG ++ + + + KDI
Sbjct: 111 KGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDI 150
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 33.1 bits (74), Expect = 0.063
Identities = 55/268 (20%), Positives = 109/268 (40%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 66
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ + VL N D+P + + A
Sbjct: 67 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCALVLGDNIFYGHDLPKLMEAA 126
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 127 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 180
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D ++ + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 181 NDVVQ--MAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTGTHQSLIEASN 238
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 239 FIATIEERQ----GLKVSCPEEIAFRKG 262
>pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 586
Score = 32.7 bits (73), Expect = 0.082
Identities = 55/268 (20%), Positives = 108/268 (39%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 66
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ VL N D+P + + A
Sbjct: 67 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 126
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 127 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 180
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D ++ + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 181 NDVVQ--MAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTGTHQSLIEASN 238
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 239 FIATIEERQ----GLKVSCPEEIAFRKG 262
Score = 32.3 bits (72), Expect = 0.11
Identities = 55/268 (20%), Positives = 108/268 (39%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 300 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 359
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ VL N D+P + + A
Sbjct: 360 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 419
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 420 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 473
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D ++ + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 474 NDVVQ--MAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 531
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 532 FIATIEERQ----GLKVSCPEEIAFRKG 555
>pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
Length = 293
Score = 32.7 bits (73), Expect = 0.082
Identities = 55/268 (20%), Positives = 108/268 (39%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 66
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ VL N D+P + + A
Sbjct: 67 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 126
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 127 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 180
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D ++ + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 181 NDVVQ--MAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTGTHQSLIEASN 238
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 239 FIATIEERQ----GLKVSCPEEIAFRKG 262
>pdb|1XAT| Structure Of The Hexapeptide Xenobiotic Acetyltransferase From
Pseudomonas Aeruginosa
pdb|2XAT| Complex Of The Hexapeptide Xenobiotic Acetyltransferase With
Chloramphenicol And Desulfo-Coenzyme A
Length = 212
Score = 32.7 bits (73), Expect = 0.082
Identities = 12/37 (32%), Positives = 23/37 (61%)
Query: 371 TIIGENVFIGSDSQLVAPINIGSNVLIGSGTTITKDI 407
T+IG V+IG+++ + + +G +IGS +T D+
Sbjct: 111 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDV 147
>pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 586
Score = 32.3 bits (72), Expect = 0.11
Identities = 55/268 (20%), Positives = 108/268 (39%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 66
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ VL N D+P + + A
Sbjct: 67 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 126
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 127 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 180
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D ++ + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 181 NDVVQ--MAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 238
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 239 FIATIEERQ----GLKVSCPEEIAFRKG 262
Score = 32.3 bits (72), Expect = 0.11
Identities = 55/268 (20%), Positives = 108/268 (39%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 300 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 359
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ VL N D+P + + A
Sbjct: 360 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 419
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 420 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 473
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D ++ + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 474 NDVVQ--MAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 531
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 532 FIATIEERQ----GLKVSCPEEIAFRKG 555
>pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
Length = 293
Score = 32.3 bits (72), Expect = 0.11
Identities = 55/268 (20%), Positives = 108/268 (39%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 66
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ VL N D+P + + A
Sbjct: 67 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 126
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 127 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 180
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D ++ + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 181 NDVVQ--MAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 238
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 239 FIATIEERQ----GLKVSCPEEIAFRKG 262
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 31.6 bits (70), Expect = 0.18
Identities = 55/268 (20%), Positives = 107/268 (39%), Gaps = 22/268 (8%)
Query: 5 IILAAGKGTRM---RSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQE--RIKE 59
IILA G GTR+ ++ K L I +PM++Y L T LI+ Q+ R ++
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 66
Query: 60 AVLERFK-GVIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNA----DMPLITKDA 114
+ + + G+ ++ G A + ++ VL N D+P + + A
Sbjct: 67 LLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAA 126
Query: 115 LAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNAGVYGFE 174
+ + + H+ DP+ YG V + + +EEK E + G+Y ++
Sbjct: 127 VN---KESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPL---EPKSNYAVTGLYFYD 180
Query: 175 RDFLEKYLPKLHDQNAQKEYYLTDLIALGINENETIDAIFLKEECFLGVNSQTERAKAEE 234
D + + K +A+ E +TD+ + + + A+ + +L + +A
Sbjct: 181 NDVV--LMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTGTHQSLIEASN 238
Query: 235 IMLERLRKNAMDLGVVMQLPNSIYLEKG 262
+ + G+ + P I KG
Sbjct: 239 FIATIEERQ----GLKVSCPEEIAFRKG 262
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 29.3 bits (64), Expect = 0.90
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 2 LSVIILAAGKGTRMR---SSLPKTLHTICGEPMLFYILE 37
+ IILAAG GTR+R + PK L + +P++ Y +E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIE 64
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 29.3 bits (64), Expect = 0.90
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 2 LSVIILAAGKGTRMR---SSLPKTLHTICGEPMLFYILE 37
+ IILAAG GTR+R + PK L + +P++ Y +E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIE 64
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 28.9 bits (63), Expect = 1.2
Identities = 39/132 (29%), Positives = 60/132 (44%), Gaps = 30/132 (22%)
Query: 2 LSVIILAAGKGTRMRSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQERI--KE 59
++V++LA G+GTR+ + PK ++ + G P +T F I Q ERI +
Sbjct: 103 VAVLLLAGGQGTRLGVAYPKGMYDV-GLPS----RKTLFQI----------QAERILKLQ 147
Query: 60 AVLERFKGVIFHTQIVEKYSGTGGAIMQKDKTPISTKH-------ERVLILNADM-PLIT 111
V E++ G + I+ Y T G M+ K TKH E V+ M P ++
Sbjct: 148 QVAEKYYG---NKCIIPWYIMTSGRTMESTK-EFFTKHKYFGLKKENVIFFQQGMLPAMS 203
Query: 112 KDALAPLLESKN 123
D +LE KN
Sbjct: 204 FDGKI-ILEEKN 214
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 28.9 bits (63), Expect = 1.2
Identities = 39/132 (29%), Positives = 60/132 (44%), Gaps = 30/132 (22%)
Query: 2 LSVIILAAGKGTRMRSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQERI--KE 59
++V++LA G+GTR+ + PK ++ + G P +T F I Q ERI +
Sbjct: 103 VAVLLLAGGQGTRLGVAYPKGMYDV-GLPS----RKTLFQI----------QAERILKLQ 147
Query: 60 AVLERFKGVIFHTQIVEKYSGTGGAIMQKDKTPISTKH-------ERVLILNADM-PLIT 111
V E++ G + I+ Y T G M+ K TKH E V+ M P ++
Sbjct: 148 QVAEKYYG---NKCIIPWYIMTSGRTMESTK-EFFTKHKYFGLKKENVIFFQQGMLPAMS 203
Query: 112 KDALAPLLESKN 123
D +LE KN
Sbjct: 204 FDGKI-ILEEKN 214
>pdb|1BGF| Stat-4 N-Domain
Length = 124
Score = 28.9 bits (63), Expect = 1.2
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 21 KTLHTICGEPMLFYILETAFSISDDVHLILHHQQERIKEAVLERFKGVIFHTQIV 75
+T+ TI + +L + E +S + +L+L H +RI++ + +F G H +V
Sbjct: 51 ETMATILLQNLLIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKFHGNPMHVAVV 105
>pdb|1JR5|A Chain A, Solution Structure Of The Anti-Sigma Factor Asia Homodimer
pdb|1JR5|B Chain B, Solution Structure Of The Anti-Sigma Factor Asia Homodimer
pdb|1KA3|A Chain A, Anti-Sigma Factor Asia
pdb|1KA3|B Chain B, Anti-Sigma Factor Asia
Length = 90
Score = 27.7 bits (60), Expect = 2.6
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 2/76 (2%)
Query: 109 LITKDALAPLLESKNNAIGLLHLADPKGYGRVVLENHQVKKIVEEKDANDEEKEIKSVNA 168
++ K + ++E++ N I L+ GR + +N +KIV E D++ I N
Sbjct: 17 ILIKFSREDIVENRANFIAFLNEIGVTHEGRKLNQN-SFRKIVSELTQEDKKTLIDEFNE 75
Query: 169 GVYGFERDFLEKYLPK 184
G G R +LE Y K
Sbjct: 76 GFEGVYR-YLEMYTNK 90
>pdb|1INI|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-
Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved In
Mevalonate Independent Isoprenoid Biosynthesis,
Complexed With Cdp-Me And Mg2+
pdb|1I52|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-
Methylerythritol (Cdp-Me) Synthase (Ygbp) Involved In
Mevalonate Independent Isoprenoid Biosynthesis
pdb|1INJ|A Chain A, Crystal Structure Of The Apo Form Of
4-Diphosphocytidyl-2-C- Methylerythritol (Cdp-Me)
Synthetase (Ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis
Length = 236
Score = 26.9 bits (58), Expect = 4.5
Identities = 54/238 (22%), Positives = 83/238 (34%), Gaps = 59/238 (24%)
Query: 5 IILAAGKGTRMRSSLPKTLHTICGEPMLFYILETAFSISDDVHLILHHQQERIKEAVLER 64
++ AAG G RM++ PK +I + +L VH +L H R+K V+
Sbjct: 11 VVPAAGFGRRMQTECPKQYLSIGNQTIL----------EHSVHALLAH--PRVKRVVIAI 58
Query: 65 FKG--------VIFHTQIVEKYSGTGGAIMQKDKTPISTKHERVLILNADMPLITKDALA 116
G + H QI G A + + VL+ +A P + +D LA
Sbjct: 59 SPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLA 118
Query: 117 PLL-----------------------ESKNNAI-------GLLHLADPKGYGRVVLENHQ 146
LL E NAI GL H P+ + R +L +
Sbjct: 119 RLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCL 178
Query: 147 VKKIVEEKDANDEEKEIKSVNAGVYGFERDFLEKYLPKLH----DQNAQKEYYLTDLI 200
+ + E DE ++ GF +E + + A E+YLT I
Sbjct: 179 TRALNEGATITDEASALE-----YCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTI 231
>pdb|1B1Z|A Chain A, Streptococcal Pyrogenic Exotoxin A1
pdb|1B1Z|B Chain B, Streptococcal Pyrogenic Exotoxin A1
pdb|1B1Z|C Chain C, Streptococcal Pyrogenic Exotoxin A1
pdb|1B1Z|D Chain D, Streptococcal Pyrogenic Exotoxin A1
Length = 219
Score = 26.2 bits (56), Expect = 7.6
Identities = 18/88 (20%), Positives = 38/88 (42%), Gaps = 10/88 (11%)
Query: 283 IENAHIKAYSVIEESQIVNSSVGPFAHARPKSVICNSHVGNFVETKNAKLQGTKAGHLSY 342
+ + ++K+ + ++ + GP + + K+ + N + + KN + G + HL Y
Sbjct: 28 VTHENVKSVDQLLSHDLIYNVSGP-NYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCY 86
Query: 343 LGDCEIGKNTNVGAGVITCNYDGKKKHQ 370
L CE + + C Y G H+
Sbjct: 87 L--CENAERS-------ACIYGGVTNHE 105
>pdb|1FNU|A Chain A, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNU|B Chain B, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNU|C Chain C, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNU|D Chain D, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|A Chain A, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|B Chain B, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|C Chain C, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNV|D Chain D, Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|A Chain A, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|B Chain B, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|C Chain C, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|D Chain D, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|E Chain E, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|F Chain F, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|G Chain G, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
pdb|1FNW|H Chain H, Crystal Structure Of Streptococcal Pyrogenic Exotoxin A
Length = 221
Score = 26.2 bits (56), Expect = 7.6
Identities = 18/88 (20%), Positives = 38/88 (42%), Gaps = 10/88 (11%)
Query: 283 IENAHIKAYSVIEESQIVNSSVGPFAHARPKSVICNSHVGNFVETKNAKLQGTKAGHLSY 342
+ + ++K+ + ++ + GP + + K+ + N + + KN + G + HL Y
Sbjct: 30 VTHENVKSVDQLLSHDLIYNVSGP-NYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCY 88
Query: 343 LGDCEIGKNTNVGAGVITCNYDGKKKHQ 370
L CE + + C Y G H+
Sbjct: 89 L--CENAERS-------ACIYGGVTNHE 107
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 25.8 bits (55), Expect = 10.0
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 232 AEEIMLERLRKNAMDLGVVMQLPNSIYL 259
A I LE + + GV+M + NS+YL
Sbjct: 73 AYSIALEEISRGCASTGVIMSVNNSLYL 100
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,483,381
Number of Sequences: 13198
Number of extensions: 107510
Number of successful extensions: 262
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 29
length of query: 433
length of database: 2,899,336
effective HSP length: 91
effective length of query: 342
effective length of database: 1,698,318
effective search space: 580824756
effective search space used: 580824756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)