BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645308|ref|NP_207479.1| flagellar biosynthetic
protein (fliP) [Helicobacter pylori 26695]
(153 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E2O| Catalytic Domain From Dihydrolipoamide Succinyl... 25 3.0
pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein 25 5.2
pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein 25 5.2
pdb|2CAS| Canine Parvovirus Empty Capsid (Strain D) Viral... 24 8.8
pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-T... 24 8.8
pdb|4DPV|Z Chain Z, Canine Parvovirus Strain D Viral Protei... 24 8.8
pdb|1C8F|A Chain A, Feline Panleukopenia Virus Empty Capsid... 24 8.8
pdb|1SEK| The Structure Of Active Serpin K From Manduca S... 24 8.8
pdb|1FPV| Feline Panleukopenia Virus (Strain B) Viral Pro... 24 8.8
pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid... 24 8.8
>pdb|1E2O| Catalytic Domain From Dihydrolipoamide Succinyltransferase
pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
Length = 233
Score = 25.4 bits (54), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 17 DTGIKPYMDKKISYTEAFEKS---ALPFKEFMLK 47
+ +KP MD + Y EAFEK L F F +K
Sbjct: 35 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVK 68
>pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein
Length = 533
Score = 24.6 bits (52), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 61 RNLPN-PKTPDEVSLSVLIPAFMISELKTA 89
+N+P TPDE V+IP + ELK A
Sbjct: 390 KNIPEITVTPDEQKYRVVIPEDKVEELKKA 419
>pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein
Length = 525
Score = 24.6 bits (52), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 61 RNLPN-PKTPDEVSLSVLIPAFMISELKTA 89
+N+P TPDE V+IP + ELK A
Sbjct: 390 KNIPEITVTPDEQKYRVVIPEDKVEELKKA 419
>pdb|2CAS| Canine Parvovirus Empty Capsid (Strain D) Viral Protein 2
Length = 548
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 5 FFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFK 42
F + P+L YD M + ++Y++ + K L FK
Sbjct: 463 FVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFK 500
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 59 RIRNLPNPKTPDEVSLSVLIPA 80
RI+NL +P DE + SVL+ A
Sbjct: 148 RIKNLVDPDALDETTRSVLVNA 169
>pdb|4DPV|Z Chain Z, Canine Parvovirus Strain D Viral Protein 2
pdb|1C8H|A Chain A, Canine Parvovirus Strain D Empty Capsid Structure At Ph
5.5
Length = 584
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 5 FFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFK 42
F + P+L YD M + ++Y++ + K L FK
Sbjct: 499 FVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFK 536
>pdb|1C8F|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8G|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8E|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
Length = 548
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 5 FFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFK 42
F + P+L YD M + ++Y++ + K L FK
Sbjct: 463 FVKVAPNLTNQYDPDASANMSRIVTYSDFWWKGKLVFK 500
>pdb|1SEK| The Structure Of Active Serpin K From Manduca Sexta And A Model
For Serpin-Protease Complex Formation
Length = 378
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 59 RIRNLPNPKTPDEVSLSVLIPA 80
RI+NL +P DE + SVL+ A
Sbjct: 148 RIKNLVDPDALDETTRSVLVNA 169
>pdb|1FPV| Feline Panleukopenia Virus (Strain B) Viral Protein 2
Length = 584
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 5 FFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFK 42
F + P+L YD M + ++Y++ + K L FK
Sbjct: 499 FVKVAPNLTNQYDPDASANMSRIVTYSDFWWKGKLVFK 536
>pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid Structure
pdb|1IJS|P Chain P, Cpv(Strain D) Mutant A300d, Complex(Viral CoatDNA), VP2,
Ph7.5, T4 Degrees C
Length = 584
Score = 23.9 bits (50), Expect = 8.8
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 5 FFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFK 42
F + P+L YD M + ++Y++ + K L FK
Sbjct: 499 FVKVAPNLTNQYDPDASANMSRIVTYSDFWWKGKLVFK 536
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.330 0.145 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 714,423
Number of Sequences: 13198
Number of extensions: 23016
Number of successful extensions: 50
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 2,899,336
effective HSP length: 80
effective length of query: 73
effective length of database: 1,843,496
effective search space: 134575208
effective search space used: 134575208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)