BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644700|ref|NP_206870.1| urease accessory protein
(ureE) [Helicobacter pylori 26695]
(170 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EB0|A Chain A, Crystal Structure Of Bacillus Pasteurii... 75 5e-15
pdb|1GMW|A Chain A, Structure Of Uree >gi|17942863|pdb|1GMW... 38 7e-04
pdb|1GMV|A Chain A, Structure Of Uree >gi|17942867|pdb|1GMV... 37 0.001
pdb|1GMU|C Chain C, Structure Of Uree >gi|17942868|pdb|1GMU... 37 0.001
pdb|1GMW|D Chain D, Structure Of Uree 37 0.002
pdb|1E5Q|A Chain A, Ternary Complex Of Saccharopine Reducta... 27 1.2
pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein... 26 2.1
pdb|1JSS|A Chain A, Crystal Structure Of The Mus Musculus C... 25 3.6
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal ... 25 4.7
>pdb|1EB0|A Chain A, Crystal Structure Of Bacillus Pasteurii Uree At 1.85 A,
Phased By Siras. Type I Crystal Form.
pdb|1EAR|A Chain A, Crystal Structure Of Bacillus Pasteurii Uree At 1.7 A.
Type Ii Crystal Form
Length = 147
Score = 74.7 bits (182), Expect = 5e-15
Identities = 41/131 (31%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 1 MIIERLVGNLRDLNPLDFSVDHVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQG 60
M+I ++VG++ DL+ VD +++EW + K+I R +T G DIAI+L+++ L G
Sbjct: 1 MVITKIVGHIDDLSHQIKKVDWLEVEWEDLNKRILRKETENGTDIAIKLENSGT--LRYG 58
Query: 61 DILFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEK 120
D+L++ + +IA+ +V I+ +++ E+ K+ +EIGNRH + E ++K
Sbjct: 59 DVLYESDDTLIAIRTKLEKVYVIKPQTMQEMGKMAFEIGNRHTMCIIEDD--EILVRYDK 116
Query: 121 PTLALLEKLGV 131
L++++GV
Sbjct: 117 TLEKLIDEVGV 127
>pdb|1GMW|A Chain A, Structure Of Uree
pdb|1GMW|B Chain B, Structure Of Uree
pdb|1GMW|C Chain C, Structure Of Uree
Length = 143
Score = 37.7 bits (86), Expect = 7e-04
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 32 KKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEE-KEIIAVNILDSEVIHIQAKSVAE 90
K + G+D + L L L GD+L EE E + V D EV ++
Sbjct: 27 KSRVKVTLNDGRDAGLLLPRG--LLLRGGDVLSNEEGTEFVQVIAADEEVSVVRCDDPFX 84
Query: 91 VAKICYEIGNRHAALYYGESQFEF 114
+AK CY +GNRH L + +
Sbjct: 85 LAKACYALGNRHVPLQIXPGELRY 108
>pdb|1GMV|A Chain A, Structure Of Uree
pdb|1GMV|B Chain B, Structure Of Uree
Length = 143
Score = 37.4 bits (85), Expect = 0.001
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 32 KKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEE-KEIIAVNILDSEVIHIQAKSVAE 90
K + G+D + L L L GD+L EE E + V D EV ++
Sbjct: 27 KSRVKVTLNDGRDAGLLLPRG--LLLRGGDVLSNEEGTEFVQVIAADEEVSVVRCDDPFM 84
Query: 91 VAKICYEIGNRHAAL 105
+AK CY +GNRH L
Sbjct: 85 LAKACYHLGNRHVPL 99
>pdb|1GMU|C Chain C, Structure Of Uree
pdb|1GMU|A Chain A, Structure Of Uree
pdb|1GMU|B Chain B, Structure Of Uree
pdb|1GMU|D Chain D, Structure Of Uree
Length = 143
Score = 37.0 bits (84), Expect = 0.001
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 32 KKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEE-KEIIAVNILDSEVIHIQAKSVAE 90
K + G+D + L L L GD+L EE E + V D EV ++
Sbjct: 27 KSRVKVTLNDGRDAGLLLPRG--LLLRGGDVLSNEEGTEFVQVIAADEEVSVVRCDDPFM 84
Query: 91 VAKICYEIGNRHAAL 105
+AK CY +GNRH L
Sbjct: 85 LAKACYALGNRHVPL 99
>pdb|1GMW|D Chain D, Structure Of Uree
Length = 143
Score = 36.6 bits (83), Expect = 0.002
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 32 KKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEE-KEIIAVNILDSEVIHIQAKSVAE 90
K + G+D + L L L GD+L EE + + V D EV ++
Sbjct: 27 KSRVKVTLNDGRDAGLLLPRG--LLLRGGDVLSNEEGTDFVQVIAADEEVSVVRCDDPFX 84
Query: 91 VAKICYEIGNRHAALYYGESQFEF 114
+AK CY +GNRH L + +
Sbjct: 85 LAKACYALGNRHVPLQIXPGELRY 108
>pdb|1E5Q|A Chain A, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|B Chain B, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|C Chain C, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|D Chain D, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|E Chain E, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|F Chain F, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|G Chain G, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5Q|H Chain H, Ternary Complex Of Saccharopine Reductase From Magnaporthe
Grisea, Nadph And Saccharopine
pdb|1E5L|A Chain A, Apo Saccharopine Reductase From Magnaporthe Grisea
pdb|1E5L|B Chain B, Apo Saccharopine Reductase From Magnaporthe Grisea
pdb|1FF9|A Chain A, Apo Saccharopine Reductase
Length = 450
Score = 26.9 bits (58), Expect = 1.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 120 KPTLALLEKLGVQNRVLSSKLDSKERLTVSMPHSEP 155
+PTL +L G++ V L+S ++L+ + HS P
Sbjct: 16 RPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTP 51
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 26.2 bits (56), Expect = 2.1
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Query: 25 LEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQ--GDILFKEEKEI 70
L W T+K + + ++ G+ + LK P G S+ G +LFKE + +
Sbjct: 7 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 54
>pdb|1JSS|A Chain A, Crystal Structure Of The Mus Musculus
Cholesterol-Regulated Start Protein 4 (Stard4).
pdb|1JSS|B Chain B, Crystal Structure Of The Mus Musculus
Cholesterol-Regulated Start Protein 4 (Stard4)
Length = 224
Score = 25.4 bits (54), Expect = 3.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 23 VDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQGDI 62
V +EW ETR + R + LKD+P L G I
Sbjct: 150 VSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYI 189
>pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
T Lysyl_adenylate Intermediate
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
L
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
Length = 504
Score = 25.0 bits (53), Expect = 4.7
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 107 YGESQFEFKTPFEKPTL 123
YGE F+F PFEK T+
Sbjct: 312 YGEHVFDFGKPFEKLTM 328
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 885,323
Number of Sequences: 13198
Number of extensions: 32621
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 9
length of query: 170
length of database: 2,899,336
effective HSP length: 82
effective length of query: 88
effective length of database: 1,817,100
effective search space: 159904800
effective search space used: 159904800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)