BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645312|ref|NP_207483.1| hypothetical protein
[Helicobacter pylori 26695]
         (96 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KL7|A  Chain A, Crystal Structure Of Threonine Synthase...    29  0.095
pdb|1AMU|B  Chain B, Phenylalanine Activating Domain Of Gram...    27  0.28
pdb|1EEM|A  Chain A, Glutathione Transferase From Homo Sapiens     25  1.4
pdb|3BTA|A  Chain A, Crystal Structure Of Botulinum Neurotox...    24  3.1
pdb|1RKR|A  Chain A, Crystal Structure Of Azurin-I From Alca...    23  4.0
pdb|1PFX|C  Chain C, Porcine Factor Ixa                            23  5.2
pdb|1JEW|3  Chain 3, Cyro-Em Structure Of Coxsackievirus B3(...    23  6.8
pdb|1B06|A  Chain A, Superoxide Dismutase From Sulfolobus Ac...    22  8.9
pdb|1ELV|A  Chain A, Crystal Structure Of The Catalytic Doma...    22  8.9
pdb|1IGC|L  Chain L, Igg1 Fab Fragment (Mopc21) Complex With...    22  8.9

>pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase From Yeast
 pdb|1KL7|B Chain B, Crystal Structure Of Threonine Synthase From Yeast
          Length = 514

 Score = 28.9 bits (63), Expect = 0.095
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 2   MNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVL--NTYWLFLKYEVLKGALN 59
           +++ G FD   D+V AI+ +   + K   G ++S   + +L   TY+ +  ++   G  +
Sbjct: 208 LSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNSINWARILAQXTYYFYSFFQATNGKDS 267

Query: 60  KE 61
           K+
Sbjct: 268 KK 269



>pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase
          1 In A Complex With Amp And Phenylalanine
 pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase
          1 In A Complex With Amp And Phenylalanine
          Length = 563

 Score = 27.3 bits (59), Expect = 0.28
 Identities = 11/35 (31%), Positives = 21/35 (59%)

Query: 56 GALNKEQYLGLLNDFLAKFPKEKSYSSVFTNALEK 90
          G   +EQYL  +N+  A++P++K+   +F   + K
Sbjct: 17 GTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSK 51



>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
          Length = 241

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 37  CQSDVLNTYWLFLKYEVLKGAL----NKEQYLGLLNDFLAKFPK 76
           CQ  +L    LF K   L G+     NKE Y GL  +F  +F K
Sbjct: 112 CQKMILE---LFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTK 152



>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
          Length = 1295

 Score = 23.9 bits (50), Expect = 3.1
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 20   YNPHLSQKEKKGVIDSYCQSDVLNTYW-LFLKYE 52
            ++  L++KE K + D+   S +L  +W  +L+Y+
Sbjct: 1074 FDKELNEKEIKDLYDNQSNSGILKDFWGDYLQYD 1107



>pdb|1RKR|A Chain A, Crystal Structure Of Azurin-I From Alcaligenes
          Xylosoxidans Ncimb 11015
 pdb|1RKR|B Chain B, Crystal Structure Of Azurin-I From Alcaligenes
          Xylosoxidans Ncimb 11015
 pdb|1RKR|C Chain C, Crystal Structure Of Azurin-I From Alcaligenes
          Xylosoxidans Ncimb 11015
 pdb|1RKR|D Chain D, Crystal Structure Of Azurin-I From Alcaligenes
          Xylosoxidans Ncimb 11015
          Length = 129

 Score = 23.5 bits (49), Expect = 4.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 40 DVLNTYWLFLKYEVLKGALNKEQYLGLLNDFLAK 73
          +V+   W+  K   ++GA+N     GL N+++ K
Sbjct: 42 NVMGHNWVLTKQADMQGAVNDGMAAGLDNNYVKK 75



>pdb|1PFX|C Chain C, Porcine Factor Ixa
          Length = 235

 Score = 23.1 bits (48), Expect = 5.2
 Identities = 11/41 (26%), Positives = 19/41 (45%), Gaps = 9/41 (21%)

Query: 31 GVIDSYCQSDVLNTYWLF---------LKYEVLKGALNKEQ 62
          G ID++C   ++N  W+          +K  V+ G  N E+
Sbjct: 20 GKIDAFCGGSIINEKWVVTAAHCIEPGVKITVVAGEYNTEE 60



>pdb|1JEW|3 Chain 3, Cyro-Em Structure Of Coxsackievirus B3(M Strain) With Its
           Cellular Receptor, Coxsackievirus And Adenovirus
           Receptor (Car).
 pdb|1COV|3 Chain 3, Coxsackievirus B3 Coat Protein
          Length = 238

 Score = 22.7 bits (47), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (58%)

Query: 74  FPKEKSYSSVFTNALEKEIREF 95
           FP +  YSSVF+  L  EI  +
Sbjct: 85  FPLQPGYSSVFSRTLLGEILNY 106



>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
 pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
 pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
 pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
 pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
 pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
          Length = 210

 Score = 22.3 bits (46), Expect = 8.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 8  FDVSGDLVHAIYYN 21
          F+++G  +HAIY+N
Sbjct: 76 FNINGHKLHAIYWN 89



>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
           Complement C1s Protease
          Length = 333

 Score = 22.3 bits (46), Expect = 8.9
 Identities = 9/38 (23%), Positives = 18/38 (46%)

Query: 41  VLNTYWLFLKYEVLKGALNKEQYLGLLNDFLAKFPKEK 78
           ++N YW+     V++G      Y+G  +   ++  K K
Sbjct: 109 LINEYWVLTAAHVVEGNREPTMYVGSTSVQTSRLAKSK 146



>pdb|1IGC|L Chain L, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
           Protein G From Streptococcus
          Length = 213

 Score = 22.3 bits (46), Expect = 8.9
 Identities = 11/38 (28%), Positives = 21/38 (54%)

Query: 54  LKGALNKEQYLGLLNDFLAKFPKEKSYSSVFTNALEKE 91
           +K  ++ E+  G+LN +  +  K+ +YS   T  L K+
Sbjct: 146 VKWKIDSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKD 183



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,628
Number of Sequences: 13198
Number of extensions: 21006
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 12
length of query: 96
length of database: 2,899,336
effective HSP length: 72
effective length of query: 24
effective length of database: 1,949,080
effective search space: 46777920
effective search space used: 46777920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)