BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645318|ref|NP_207489.1| hydantoin utilization
protein A (hyuA) [Helicobacter pylori 26695]
         (713 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DGT|B  Chain B, Crystal Structure Of Nad+-Dependent Dna...    29  2.1
pdb|1EXU|A  Chain A, Crystal Structure Of The Human Mhc-Rela...    28  4.6
pdb|1C8B|A  Chain A, Crystal Structure Of A Novel Germinatio...    28  4.6
pdb|1GZU|A  Chain A, Crystal Structure Of Human Nicotinamide...    28  4.6
pdb|1C3G|A  Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1      27  7.8
pdb|1KKU|A  Chain A, Crystal Structure Of Nuclear Human Nico...    27  7.8
pdb|1L9M|A  Chain A, Three-Dimensional Structure Of The Huma...    27  7.8
pdb|1C4X|A  Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoa...    27  7.8

>pdb|1DGT|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
 pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
 pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
           Filiformis
 pdb|1DGT|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
          Length = 667

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 129 PLIPLKRIRGVTERTDVKGQVVIPVRQEEVKVAVKELLEAGAK 171
           P IP +R++GV +R +V+G+V +P+  E      +EL E G K
Sbjct: 151 PTIP-RRLKGVPDRLEVRGEVYMPI--EAFLRLNEELEERGEK 190



>pdb|1EXU|A Chain A, Crystal Structure Of The Human Mhc-Related Fc Receptor
          Length = 267

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 15/52 (28%), Positives = 26/52 (49%)

Query: 323 ASDPDMARLVLSLPLVAMDSVGAGAGSFVRIDPHSRSVKLGPDSAGYRVGTC 374
           A++ ++  L+ S P    + +  G G+    +P S  +K  P S G+ V TC
Sbjct: 147 AANKELTFLLFSCPHRLREHLERGRGNLEWKEPPSMRLKARPSSPGFSVLTC 198



>pdb|1C8B|A Chain A, Crystal Structure Of A Novel Germination Protease From
           Spores Of Bacillus Megaterium: Structural Rearrangements
           And Zymogen Activation
 pdb|1C8B|B Chain B, Crystal Structure Of A Novel Germination Protease From
           Spores Of Bacillus Megaterium: Structural Rearrangements
           And Zymogen Activation
          Length = 371

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 11/32 (34%), Positives = 23/32 (71%)

Query: 142 RTDVKGQVVIPVRQEEVKVAVKELLEAGAKAI 173
           ++++KG +V    ++ VK+++ E+ E GA+AI
Sbjct: 34  QSEIKGVIVKEKEEQGVKISMVEITEEGAEAI 65



>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
           Adenylyltransferase In Complex With Nmn
 pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
           Adenylyltransferase In Complex With Nmn
 pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
           Adenylyltransferase In Complex With Nmn
          Length = 290

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 622 IMRGVVATQKPVIPVEKEHGATPPKEAKIGVRKFYRHKKWVDADVWQ 668
           +++G+++   PV    K+ G  P     I      ++ KWV+ D W+
Sbjct: 54  VVKGIIS---PVGDAYKKKGLIPAYHRVIXAELATKNSKWVEVDTWE 97



>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
          Length = 170

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 24/82 (29%), Positives = 32/82 (38%), Gaps = 9/82 (10%)

Query: 148 QVVIPVRQEEVKVAVKELLEAGAKAIVICLLQSHKNAESERIVRDIALKEIEKLGKNIPV 207
           QV +PV  E++ V  K+  + G K           +  SE+   DI LK   K G  I  
Sbjct: 4   QVNLPVSLEDLFVGKKKSFKIGRKG---------PHGASEKTQIDIQLKPGWKAGTKITY 54

Query: 208 FASVDYYPQRKESHRMNTTILE 229
               DY PQ      +   I E
Sbjct: 55  KNQGDYNPQTGRRKTLQFVIQE 76



>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
           Mononucleotide Adenylyltransferase
          Length = 279

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 622 IMRGVVATQKPVIPVEKEHGATPPKEAKIGVRKFYRHKKWVDADVWQ 668
           +++G+++   PV    K+ G  P     I      ++ KWV+ D W+
Sbjct: 43  VVKGIIS---PVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTWE 86



>pdb|1L9M|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
           3 Enzyme: Binding Of Calcium Ions Change Structure For
           Activation
 pdb|1L9M|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
           3 Enzyme: Binding Of Calcium Ions Change Structure For
           Activation
 pdb|1L9N|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
           3 Enzyme: Binding Of Calcium Ions Change Structure For
           Activation
 pdb|1L9N|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
           3 Enzyme: Binding Of Calcium Ions Change Structure For
           Activation
          Length = 692

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 23/133 (17%)

Query: 264 GTISWKAKELARTIVSGPIGGVIGSKLLGETLGYDNIACSDIGGTSFDMALIVKSNFNIA 323
           G I W   +    I+S      I   +L  +L +   A +D+   +              
Sbjct: 171 GMIGWNFGQFEEDILS------ICLSILDRSLNFRRDAATDVASRN-------------- 210

Query: 324 SDPDMARLVLSLPLVAMDSVGAGAGSFVRIDPHSRSVKLGPDSAGYRVGTCWKDSGLDTV 383
            DP     VLS  + + D  G  AG++       R  +    S    +   WK SGL  V
Sbjct: 211 -DPKYVGRVLSAMINSNDDNGVLAGNWSGTYTGGRDPRSWDGSV--EILKNWKKSGLSPV 267

Query: 384 SVTDCHIVLGYLN 396
               C +  G LN
Sbjct: 268 RYGQCWVFAGTLN 280



>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
           From Rhodococcus Sp. Strain Rha1
          Length = 285

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 312 MALIVKSNFNIASDPDMARLVLSLPLVAMDSVGAGAGSFV 351
           M  IVKS F +A+DP++ R    +  V  +S+ AG  S V
Sbjct: 180 MEEIVKSRFEVANDPEVRR----IQEVMFESMKAGMESLV 215



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.318    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,320,022
Number of Sequences: 13198
Number of extensions: 189601
Number of successful extensions: 559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 10
length of query: 713
length of database: 2,899,336
effective HSP length: 95
effective length of query: 618
effective length of database: 1,645,526
effective search space: 1016935068
effective search space used: 1016935068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)