BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645320|ref|NP_207491.1| hypothetical protein
[Helicobacter pylori 26695]
(168 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DIP|A Chain A, The Solution Structure Of Porcine Delta... 29 0.24
pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With ... 27 1.6
pdb|1IBG|H Chain H, Igg Fab (Igg2b, Kappa) Fragment (40-50 ... 26 2.7
pdb|1FRW|A Chain A, Structure Of E. Coli Moba With Bound Gt... 25 6.0
pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cof... 25 6.0
pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative T... 24 7.8
pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Re... 24 7.8
>pdb|1DIP|A Chain A, The Solution Structure Of Porcine Delta-Sleep-Inducing
Peptide Immunoreactive Peptide, Nmr, 10 Structures
pdb|1DIP|B Chain B, The Solution Structure Of Porcine Delta-Sleep-Inducing
Peptide Immunoreactive Peptide, Nmr, 10 Structures
Length = 78
Score = 29.3 bits (64), Expect = 0.24
Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 3/37 (8%)
Query: 8 QEQIKNLVEGNLDW---NTVLKMLSMPKDHERFQMYL 41
+EQI+ LVE N NT+LK L+ P+ E+FQ L
Sbjct: 21 KEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRL 57
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 144 VIHDFEPDIEVFYKDWLGIQPPERR 168
V+ +E ++ VF KDW G + P++R
Sbjct: 258 VMDTYEDEVGVFNKDWEGKEFPDKR 282
>pdb|1IBG|H Chain H, Igg Fab (Igg2b, Kappa) Fragment (40-50 Fab) Complexed
With Ouabain
Length = 217
Score = 25.8 bits (55), Expect = 2.7
Identities = 12/28 (42%), Positives = 20/28 (70%), Gaps = 1/28 (3%)
Query: 17 GNLDWNTVL-KMLSMPKDHERFQMYLKV 43
GN D+N+ L LS+ KD+ + Q++LK+
Sbjct: 54 GNTDYNSALMSRLSINKDNSKSQVFLKM 81
>pdb|1FRW|A Chain A, Structure Of E. Coli Moba With Bound Gtp And Manganese
pdb|1FR9|A Chain A, Structure Of E. Coli Moba
Length = 194
Score = 24.6 bits (52), Expect = 6.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 41 LKVLQDKV-DFDDKIVLPLGPHLFVVQDAQKKWVIKCSCGHAFCAPE 86
LKV++D + D+ PL L V+Q +W + C C + P+
Sbjct: 66 LKVIEDSLADYPG----PLAGMLSVMQQEAGEWFLFCPCDTPYIPPD 108
>pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein Moba (Protein Fa) From Escherichia Coli At Near
Atomic Resolution
Length = 201
Score = 24.6 bits (52), Expect = 6.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 41 LKVLQDKV-DFDDKIVLPLGPHLFVVQDAQKKWVIKCSCGHAFCAPE 86
LKV++D + D+ PL L V+Q +W + C C + P+
Sbjct: 66 LKVIEDSLADYPG----PLAGMLSVMQQEAGEWFLFCPCDTPYIPPD 108
>pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator In Complex With Nad At 1.5 A Resolution
(Trigonal Form)
pdb|1K6J|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6J|B Chain B, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6I|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Trigonal Form)
Length = 352
Score = 24.3 bits (51), Expect = 7.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 134 DVEAPTPWYPVIHDFEPDIEVFYKD 158
D + P PW HD P + +KD
Sbjct: 182 DPDIPLPWLDAEHDVGPALLQIFKD 206
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 24.3 bits (51), Expect = 7.8
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 77 SCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQVYREYICPDCGILLDVE 136
S GH +E W+L + + E + A +HW+ R+++ D G V
Sbjct: 6 SIGHKPEPTDEEWEL---------IKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVN 56
Query: 137 AP 138
AP
Sbjct: 57 AP 58
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,124,678
Number of Sequences: 13198
Number of extensions: 45505
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 7
length of query: 168
length of database: 2,899,336
effective HSP length: 82
effective length of query: 86
effective length of database: 1,817,100
effective search space: 156270600
effective search space used: 156270600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)