BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644701|ref|NP_206871.1| urease accessory protein
(ureI) [Helicobacter pylori 26695]
         (195 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1L8A|A  Chain A, E. Coli Pyruvate Dehydrogenase >gi|2221...    25  7.7

>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
 pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
          Length = 886

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 135 GITEGDWWAIIWLAWGVLW 153
           GI EG  W +I + WG  W
Sbjct: 280 GIFEGAGWNVIKVMWGSRW 298



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.144    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,244,380
Number of Sequences: 13198
Number of extensions: 51617
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 1
length of query: 195
length of database: 2,899,336
effective HSP length: 83
effective length of query: 112
effective length of database: 1,803,902
effective search space: 202037024
effective search space used: 202037024
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)