BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645322|ref|NP_207493.1| hypothetical protein
[Helicobacter pylori 26695]
(342 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s ... 30 0.52
pdb|1WER| Ras-Gtpase-Activating Domain Of Human P120gap >... 29 0.68
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Stre... 27 3.4
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans.... 27 3.4
pdb|1XAS| 1,4-Beta-D-Xylan Xylanohydrolase (E.C.3.2.1.8) 27 3.4
pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans.... 27 3.4
pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of... 27 4.4
pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bo... 27 4.4
pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I >gi|67... 27 4.4
pdb|1TAQ| Structure Of Taq Dna Polymerase 27 4.4
pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of... 27 4.4
pdb|1TAU|A Chain A, Structure Of Dna Polymerase 27 4.4
pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragm... 27 4.4
pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An ... 27 4.4
pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of... 27 4.4
pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Aut... 26 7.5
pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fib... 25 9.8
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 25 9.8
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 29.6 bits (65), Expect = 0.52
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 104 LSVHSQIKSPILEQDMQQKISQIPLKDLNALLEKMKPTRLNCSLTFNALDEKTLNDNLKC 163
L+V +I SP++E +KI +I + C+++ D KTL D +
Sbjct: 48 LAVEKRITSPLMEPSSIEKIVEID-------------AHIGCAMSGLIADAKTLIDKARV 94
Query: 164 DLTNAENILAYTFFQEGLMEAQENLSLK 191
+ N T E + +A NL+L+
Sbjct: 95 ETQNHWFTYNETMTVESVTQAVSNLALQ 122
>pdb|1WER| Ras-Gtpase-Activating Domain Of Human P120gap
pdb|1WQ1|G Chain G, Ras-Rasgap Complex
Length = 334
Score = 29.3 bits (64), Expect = 0.68
Identities = 19/78 (24%), Positives = 43/78 (54%), Gaps = 3/78 (3%)
Query: 96 SLDKSSLTLSVHSQIKSPILEQDMQQKISQIPLKDLNALLEKMKPTRLNCSLTFNALDEK 155
S++ + TL + + S ++EQ M+ +Q L + K+ ++ +C L+ + L++
Sbjct: 66 SMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKLEK- 124
Query: 156 TLNDNLKCDLTNAENILA 173
N+++ +LT+ NIL+
Sbjct: 125 --NEDVNTNLTHLLNILS 140
>pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
Length = 436
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 276 FQSHFKDDTALQQNFKGLLQAFVSMAKD 303
FQSHF + NF+ LQ F ++ D
Sbjct: 204 FQSHFNSGSPYNSNFRTTLQNFAALGVD 231
>pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
Length = 313
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 276 FQSHFKDDTALQQNFKGLLQAFVSMAKD 303
FQSHF + NF+ LQ F ++ D
Sbjct: 204 FQSHFNSGSPYNSNFRTTLQNFAALGVD 231
>pdb|1XAS| 1,4-Beta-D-Xylan Xylanohydrolase (E.C.3.2.1.8)
Length = 299
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 276 FQSHFKDDTALQQNFKGLLQAFVSMAKD 303
FQSHF + NF+ LQ F ++ D
Sbjct: 204 FQSHFNSGSPYNSNFRTTLQNFAALGVD 231
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 276 FQSHFKDDTALQQNFKGLLQAFVSMAKD 303
FQSHF + NF+ LQ F ++ D
Sbjct: 204 FQSHFNSGSPYNSNFRTTLQNFAALGVD 231
>pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 455 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 514
Query: 232 LEAFY 236
+E Y
Sbjct: 515 MEGVY 519
>pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
pdb|1KTQ| Dna Polymerase
Length = 543
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 458 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 517
Query: 232 LEAFY 236
+E Y
Sbjct: 518 MEGVY 522
>pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I
pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
Length = 540
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 455 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 514
Query: 232 LEAFY 236
+E Y
Sbjct: 515 MEGVY 519
>pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 747 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 806
Query: 232 LEAFY 236
+E Y
Sbjct: 807 MEGVY 811
>pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 455 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 514
Query: 232 LEAFY 236
+E Y
Sbjct: 515 MEGVY 519
>pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 747 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 806
Query: 232 LEAFY 236
+E Y
Sbjct: 807 MEGVY 811
>pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus
Length = 538
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 453 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 512
Query: 232 LEAFY 236
+E Y
Sbjct: 513 MEGVY 517
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
Orientation For The Structure-Specific Nuclease Domain
Length = 832
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 747 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 806
Query: 232 LEAFY 236
+E Y
Sbjct: 807 MEGVY 811
>pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
From T. Aquaticus Bound To A PrimerTEMPLATE DNA
Length = 539
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 172 LAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNL 231
+A+ +G L++ +F L A+ + ++ D+L APK A K +
Sbjct: 454 MAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEV 513
Query: 232 LEAFY 236
+E Y
Sbjct: 514 MEGVY 518
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 25.8 bits (55), Expect = 7.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 104 LSVHSQIKSPILEQDMQQKISQIPLKDLNALLEKMK 139
L+VH ++ P L+ D S+IP N + +K+K
Sbjct: 297 LTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIK 332
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 25.4 bits (54), Expect = 9.8
Identities = 26/111 (23%), Positives = 59/111 (52%), Gaps = 9/111 (8%)
Query: 86 NFKNLSIKLRSLDKSSLTLS--VHSQI-KSPILEQDMQQKISQIPLKDLNALLE-KMKPT 141
N+ ++S +LR + +TL V +Q+ + L+ +Q+++ + +K L ++ K++
Sbjct: 108 NYGHVSTELR---RRIVTLKQRVATQVNRIKALQNSIQEQV--VEMKRLEVDIDIKIRAC 162
Query: 142 RLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEGLMEAQENLSLKN 192
+ +C+ +F+ +K DN++ LT A +I + FQ + + LK+
Sbjct: 163 KGSCARSFDYQVDKEGYDNIQKHLTQASSIDMHPDFQTTTLSTLKMRPLKD 213
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 25.4 bits (54), Expect = 9.8
Identities = 26/111 (23%), Positives = 59/111 (52%), Gaps = 9/111 (8%)
Query: 86 NFKNLSIKLRSLDKSSLTLS--VHSQI-KSPILEQDMQQKISQIPLKDLNALLE-KMKPT 141
N+ ++S +LR + +TL V +Q+ + L+ +Q+++ + +K L ++ K++
Sbjct: 108 NYGHVSTELR---RRIVTLKQRVATQVNRIKALQNSIQEQV--VEMKRLEVDIDIKIRAC 162
Query: 142 RLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEGLMEAQENLSLKN 192
+ +C+ +F+ +K DN++ LT A +I + FQ + + LK+
Sbjct: 163 KGSCARSFDYQVDKEGYDNIQKHLTQASSIDMHPDFQTTTLSTLKMRPLKD 213
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,686,115
Number of Sequences: 13198
Number of extensions: 61447
Number of successful extensions: 243
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 27
length of query: 342
length of database: 2,899,336
effective HSP length: 89
effective length of query: 253
effective length of database: 1,724,714
effective search space: 436352642
effective search space used: 436352642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)