BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645325|ref|NP_207496.1| hypothetical protein
[Helicobacter pylori 26695]
         (158 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1GUL|A  Chain A, Human Glutathione Transferase A4-4 Comp...    25  5.4

>pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUL|B Chain B, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUL|C Chain C, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUL|D Chain D, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUL|E Chain E, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUL|F Chain F, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUL|G Chain G, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUL|H Chain H, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
           Glutathione
 pdb|1GUM|A Chain A, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|B Chain B, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|C Chain C, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|D Chain D, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|E Chain E, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|F Chain F, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|G Chain G, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|H Chain H, Human Glutathione Transferase A4-4 Without Ligands
          Length = 222

 Score = 24.6 bits (52), Expect = 5.4
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 28  QEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKTAPYVLDYHCSIITRNLPNLKNPLLP 85
           Q FL+  +L + D  ++    ++ + I + +   P++ +Y  ++   N+P +K  L P
Sbjct: 145 QSFLVGNQLSLADVILLQTILALEEKIPNILSAFPFLQEY--TVKLSNIPTIKRFLEP 200



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.141    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 780,658
Number of Sequences: 13198
Number of extensions: 28152
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 1
length of query: 158
length of database: 2,899,336
effective HSP length: 81
effective length of query: 77
effective length of database: 1,830,298
effective search space: 140932946
effective search space used: 140932946
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)