BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645326|ref|NP_207497.1| response regulator
[Helicobacter pylori 26695]
(381 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 66 6e-12
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 65 2e-11
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Co... 58 2e-09
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain >gi... 55 1e-08
pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Resp... 52 1e-07
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 50 4e-07
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 50 4e-07
pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal... 49 9e-07
pdb|1TMY| Chey From Thermotoga Maritima (Apo-I) >gi|27811... 48 2e-06
pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylat... 47 3e-06
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 45 1e-05
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 45 1e-05
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 45 1e-05
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 45 1e-05
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 45 2e-05
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 45 2e-05
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 45 2e-05
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 45 2e-05
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 45 2e-05
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 44 2e-05
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RE... 44 2e-05
pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver ... 44 2e-05
pdb|5CHY| Structure Of Chemotaxis Protein Chey 44 3e-05
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 44 4e-05
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 42 9e-05
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 42 1e-04
pdb|1EHC| Structure Of Signal Transduction Protein Chey 42 1e-04
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 42 1e-04
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 42 2e-04
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 42 2e-04
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 42 2e-04
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 42 2e-04
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 42 2e-04
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 41 2e-04
pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp... 41 2e-04
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 41 2e-04
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 41 3e-04
pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia C... 41 3e-04
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 40 6e-04
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 36 0.008
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 35 0.014
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 35 0.014
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 35 0.014
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 34 0.031
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 34 0.031
pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Ma... 32 0.091
pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj B... 32 0.16
pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Confor... 27 2.9
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Acti... 27 2.9
pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:... 27 2.9
pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near ... 27 2.9
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 27 2.9
pdb|1B9K|A Chain A, Alpha-Adaptin Appendage Domain, From Cl... 27 3.8
pdb|1KY6|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage I... 27 3.8
pdb|1COY| Cholesterol Oxidase (E.C.1.1.3.6) Complex With ... 27 5.0
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 26 8.6
pdb|1JTH|C Chain C, Crystal Structure And Biophysical Prope... 26 8.6
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 26 8.6
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Fi... 26 8.6
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 26 8.6
pdb|1UOX| Urate Oxidase From Aspergillus Flavus Complexed... 26 8.6
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 66.2 bits (160), Expect = 6e-12
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDESF-DLVITDINMPHMDGLE 61
+ +++DD ++RK+++ EL + SF + +ALA L F +VI+DI MP MDGL
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAG-FTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLA 64
Query: 62 FLR---LLEGKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKK 114
R L+ I++TG+ + A+ +I+ G DF KPF + L++S R +K
Sbjct: 65 LFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEK 120
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 64.7 bits (156), Expect = 2e-11
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDESF-DLVITDINMPHMDGLE 61
+ +++DD ++RK+++ EL + SF + +ALA L F +VI+DI MP MDGL
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAG-FTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLA 64
Query: 62 FLR---LLEGKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKK 114
R L+ I++TG+ + A+ +I+ G DF KPF + L++S R ++
Sbjct: 65 LFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120
>pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 57.8 bits (138), Expect = 2e-09
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKL-DESFDLVITDINMPHMDGLE 61
+ IV+D+ +RKSL F + + ++ + LA D +++TD+ MP M G+E
Sbjct: 6 VHIVDDEEPVRKSLA-FMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVE 64
Query: 62 FLRLLEG---KYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKKVL 116
LR L SIVITG+ + A+++++ G DF +KPF+ +++E+I R + L
Sbjct: 65 LLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122
>pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 55.1 bits (131), Expect = 1e-08
Identities = 37/118 (31%), Positives = 65/118 (54%), Gaps = 5/118 (4%)
Query: 3 IAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKL-DESFDLVITDINMPHMDGLE 61
+ IV+D+ +RKSL F + + ++ + LA D +++T + MP M G+E
Sbjct: 6 VHIVDDEEPVRKSLA-FMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTXLRMPDMSGVE 64
Query: 62 FLRLLEG---KYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKKVL 116
LR L SIVITG+ + A+++++ G DF +KPF+ +++E+I R + L
Sbjct: 65 LLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 51.6 bits (122), Expect = 1e-07
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFK-NPKDALAKLDESF-DLVITDINMPHMD 58
+K+ I +D+ + L+ + Q D+E++ N +D L L+E D+++ DI MPH+D
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLD 62
Query: 59 GLEFLRLLEGKYES----IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
GL L + +E I++T + ++ LG F KPF E L I
Sbjct: 63 GLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHI 117
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 50.1 bits (118), Expect = 4e-07
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 5 IVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKL-DESFDLVITDINMPHMDGLEFL 63
+V+DD ++R LE L +F+N + LA L ++ D++++DI MP MDGL L
Sbjct: 8 VVDDDSSIRWVLERALA-GAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALL 66
Query: 64 RLLEGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPF 100
+ ++ ++ I++T ++ L+ A+ + + G D+ KPF
Sbjct: 67 KQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 50.1 bits (118), Expect = 4e-07
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 5 IVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKL-DESFDLVITDINMPHMDGLEFL 63
+V+DD ++R LE L +F+N + LA L ++ D++++DI MP MDGL L
Sbjct: 8 VVDDDSSIRWVLERALA-GAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALL 66
Query: 64 RLLEGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPF 100
+ ++ ++ I++T ++ L+ A+ + + G D+ KPF
Sbjct: 67 KQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 48.9 bits (115), Expect = 9e-07
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFK-NPKDALAKLDESF-DLVITDINMPHMD 58
+K+ I +D+ + L+ + Q D+E++ N +D L L+E D+++ I MPH+D
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLXIIMPHLD 62
Query: 59 GLEFLRLLEGKYES----IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
GL L + +E I++T + ++ LG F KPF E L I
Sbjct: 63 GLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHI 117
>pdb|1TMY| Chey From Thermotoga Maritima (Apo-I)
pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|2TMY| Chey From Thermotoga Maritima (Apo-Ii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (Mg-Iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (Mg-Iv)
Length = 120
Score = 47.8 bits (112), Expect = 2e-06
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDE-SFDLVITDINMPHMDGL 60
++ IV+D MR L+ N ++A+ K E D+V DI MP M+G+
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGI 63
Query: 61 EFLR---LLEGKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKK 114
+ ++ ++ + IV + I++I+ G KDF KPF+P ++E++ + K
Sbjct: 64 DAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVSK 120
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 47.4 bits (111), Expect = 3e-06
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 5 IVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKL-DESFDLVITDINMPHMDGLEFL 63
+V+DD ++R LE L +F+N + LA L ++ D++++ I MP MDGL L
Sbjct: 8 VVDDDSSIRWVLERALA-GAGLTCTTFENGNEVLAALASKTPDVLLSXIRMPGMDGLALL 66
Query: 64 RLLEGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPF 100
+ ++ ++ I++T ++ L+ A+ + + G D+ KPF
Sbjct: 67 KQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 45.4 bits (106), Expect = 1e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D+ MR+ + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 61
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 62 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 116
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 45.1 bits (105), Expect = 1e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D+ MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 61
Query: 60 LEFLRLL--EGKYESIVI---TGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G ++ + T A I + + G + KPF L E +
Sbjct: 62 LELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 116
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 45.1 bits (105), Expect = 1e-05
Identities = 31/115 (26%), Positives = 52/115 (44%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL F +I+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDG 64
Query: 60 LEFLRLLE-----GKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 45.1 bits (105), Expect = 1e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 44.7 bits (104), Expect = 2e-05
Identities = 31/115 (26%), Positives = 52/115 (44%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLLEGKYES-----IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 44.3 bits (103), Expect = 2e-05
Identities = 31/115 (26%), Positives = 51/115 (43%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL F +I D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMDG 64
Query: 60 LEFLRLLE-----GKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL| The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 44.3 bits (103), Expect = 2e-05
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 3 IAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDESFD--LVITDINMPHMDGL 60
I +++D +R ++ + D+ +V + + +L ES D L++ D+NMP M+GL
Sbjct: 8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGL 67
Query: 61 EFLRLLEGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYR 111
E L L K S +V + + + +++ G + K +PE LL+++++
Sbjct: 68 ETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQ 121
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 44.3 bits (103), Expect = 2e-05
Identities = 26/105 (24%), Positives = 56/105 (52%), Gaps = 5/105 (4%)
Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLD-ESFDLVITDINMPHMDGL 60
KI +V+D+ ++ L+ E + ++++ + ++AL K + E DL++ D+ +P +DG+
Sbjct: 5 KILVVDDEESIVTLLQYNLE-RSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGI 63
Query: 61 EFLRLLEGK---YESIVITGNATLNKAIDSIRLGVKDFFQKPFKP 102
E + L + + +++T + + LG D+ KPF P
Sbjct: 64 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSP 108
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKL 119
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 43.5 bits (101), Expect = 4e-05
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 66
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 67 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 121
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 42.4 bits (98), Expect = 9e-05
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++ A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 42.0 bits (97), Expect = 1e-04
Identities = 37/121 (30%), Positives = 55/121 (44%), Gaps = 23/121 (19%)
Query: 12 MRKSLELFFELQDD-----------LEIVSFKNPK------DALAKLDES-FDLVITDIN 53
MR EL F + DD L+ + F N + DAL KL + VI+D N
Sbjct: 1 MRSDKELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN 60
Query: 54 MPHMDGLEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLES 108
MP+MDGLE L+ + +G + +++T A I + + G + KPF L E
Sbjct: 61 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 120
Query: 109 I 109
+
Sbjct: 121 L 121
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 42.0 bits (97), Expect = 1e-04
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+ MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 42.0 bits (97), Expect = 1e-04
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+ NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++ A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKL 119
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+ NMP+MDG
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISAWNMPNMDG 64
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 65 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 41.6 bits (96), Expect = 2e-04
Identities = 32/112 (28%), Positives = 55/112 (48%), Gaps = 5/112 (4%)
Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLD-ESFDLVITDINMPHMDGL 60
KI IV+D +R L F ++ + N AL + E DLV+ D+ +P MDG+
Sbjct: 5 KILIVDDQYGIRILLNEVFN-KEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGI 63
Query: 61 EFL---RLLEGKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
E L ++++ I++T L+ +S LG F KPF + + +++
Sbjct: 64 EILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAV 115
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D R+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+ MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 63
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A I + + G + KPF L E +
Sbjct: 64 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 118
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 41.2 bits (95), Expect = 2e-04
Identities = 32/112 (28%), Positives = 55/112 (48%), Gaps = 5/112 (4%)
Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLD-ESFDLVITDINMPHMDGL 60
KI IV+D +R L F ++ + N AL + E DLV+ D+ +P MDG+
Sbjct: 3 KILIVDDQSGIRILLNEVFN-KEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGI 61
Query: 61 EFL---RLLEGKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
E L ++++ I++T L+ +S LG F KPF + + +++
Sbjct: 62 EILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAV 113
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 41.2 bits (95), Expect = 2e-04
Identities = 31/115 (26%), Positives = 53/115 (45%), Gaps = 6/115 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDES-FDLVITDINMPHMDG 59
+K +V+D MR+ + + + ++ DAL KL + VI+D NMP+MDG
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG 65
Query: 60 LEFLRLL--EGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
LE L+ + +G + +++T A + G + KPF L E +
Sbjct: 66 LELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKL 120
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 41.2 bits (95), Expect = 2e-04
Identities = 32/112 (28%), Positives = 55/112 (48%), Gaps = 5/112 (4%)
Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLD-ESFDLVITDINMPHMDGL 60
KI IV+D +R L F ++ + N AL + E DLV+ D+ +P MDG+
Sbjct: 5 KILIVDDQSGIRILLNEVFN-KEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGI 63
Query: 61 EFL---RLLEGKYESIVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
E L ++++ I++T L+ +S LG F KPF + + +++
Sbjct: 64 EILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAV 115
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 40.8 bits (94), Expect = 3e-04
Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 6/80 (7%)
Query: 36 DALAKLDES-FDLVITDINMPHMDGLEFLRLL--EGKYES---IVITGNATLNKAIDSIR 89
DAL KL + VI+D NMP+MDGLE L+ + +G + +++T A I + +
Sbjct: 40 DALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQ 99
Query: 90 LGVKDFFQKPFKPELLLESI 109
G + KPF L E +
Sbjct: 100 AGASGYVVKPFTAATLEEKL 119
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
Length = 127
Score = 40.8 bits (94), Expect = 3e-04
Identities = 27/114 (23%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDESF-DLVITDINMPHMDGL 60
+I +VED+ +R+ + E Q+ + V ++ A+ +L+E + DL++ D +P G+
Sbjct: 4 RILVVEDEAPIREMVCFVLE-QNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62
Query: 61 EFLRLLEGKYES-----IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESI 109
+F++ L+ + + +++T + + G D+ KPF P+ L+ I
Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARI 116
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 39.7 bits (91), Expect = 6e-04
Identities = 28/105 (26%), Positives = 51/105 (47%), Gaps = 6/105 (5%)
Query: 1 MKIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDESF--DLVITDINMPHMD 58
+++ V+D MR+ + D+E+V+ L + F D++ D+ MP MD
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMD 63
Query: 59 GLEFL-RLLEGKYESIVITGNAT---LNKAIDSIRLGVKDFFQKP 99
GL+FL +L+ + +V+ + T + ++ LG DF KP
Sbjct: 64 GLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.8 bits (81), Expect = 0.008
Identities = 30/171 (17%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 159 NVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATA 218
+V+L G G+GK AH I Q + H +++ P + + ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIH------VTSGPVLVKQGDM------------- 93
Query: 219 PKMGLFESANKGTI-FLDEIAEMPLQLQSKLLRVVQEKEITRL----GDNKSVKIDVRFI 273
+ S +G + F+DEI + ++ L +++ +I + KS++ID++
Sbjct: 94 --AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151
Query: 274 SATNANMKEKIAAKEFREDLFFRLQIVPITIAPLRERVEEILPIAEIKLKE 324
+ A ++ + + R L++ T+ L+E ++ + ++++++
Sbjct: 152 TLVGATVRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.0 bits (79), Expect = 0.014
Identities = 30/171 (17%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 159 NVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATA 218
+V+L G G+GK AH I Q + I++++ P + + ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVLVKQGDM------------- 93
Query: 219 PKMGLFESANKG-TIFLDEIAEMPLQLQSKLLRVVQEKEITRL----GDNKSVKIDVRFI 273
+ S +G +F+DEI + ++ L +++ +I + KS++ID++
Sbjct: 94 --AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151
Query: 274 SATNANMKEKIAAKEFREDLFFRLQIVPITIAPLRERVEEILPIAEIKLKE 324
+ A + + + R L++ T+ L+E ++ + ++++++
Sbjct: 152 TLVGATTRSGLLSSPLRSAFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.0 bits (79), Expect = 0.014
Identities = 30/171 (17%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 159 NVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATA 218
+V+L G G+GK AH I Q + I++++ P + + ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVLVKQGDM------------- 93
Query: 219 PKMGLFESANKG-TIFLDEIAEMPLQLQSKLLRVVQEKEITRL----GDNKSVKIDVRFI 273
+ S +G +F+DEI + ++ L +++ +I + KS++ID++
Sbjct: 94 --AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151
Query: 274 SATNANMKEKIAAKEFREDLFFRLQIVPITIAPLRERVEEILPIAEIKLKE 324
+ A + + + R L++ T+ L+E ++ + ++++++
Sbjct: 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.0 bits (79), Expect = 0.014
Identities = 30/171 (17%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 159 NVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATA 218
+V+L G G+GK AH I Q + I++++ P + + ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVLVKQGDM------------- 93
Query: 219 PKMGLFESANKG-TIFLDEIAEMPLQLQSKLLRVVQEKEITRL----GDNKSVKIDVRFI 273
+ S +G +F+DEI + ++ L +++ +I + KS++ID++
Sbjct: 94 --AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151
Query: 274 SATNANMKEKIAAKEFREDLFFRLQIVPITIAPLRERVEEILPIAEIKLKE 324
+ A + + + R L++ T+ L+E ++ + ++++++
Sbjct: 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.031
Identities = 29/171 (16%), Positives = 75/171 (42%), Gaps = 26/171 (15%)
Query: 159 NVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATA 218
+V+L G G+GK AH I Q + I++++ P + + ++
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVLVKQGDM------------- 93
Query: 219 PKMGLFESANKG-TIFLDEIAEMPLQLQSKLLRVVQEKEITRL----GDNKSVKIDVRFI 273
+ S +G +F+DEI + ++ L +++ +I + KS++ID++
Sbjct: 94 --AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151
Query: 274 SATNANMKEKIAAKEFREDLFFRLQIVPITIAPLRERVEEILPIAEIKLKE 324
+ + + + + R L++ T+ L+E ++ + ++++++
Sbjct: 152 TLVGSTTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.031
Identities = 29/171 (16%), Positives = 74/171 (42%), Gaps = 26/171 (15%)
Query: 159 NVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATA 218
+V+L G G+G+ AH I Q + H +++ P + + ++
Sbjct: 53 HVLLAGPPGLGRTTLAHIIASELQTNIH------VTSGPVLVKQGDM------------- 93
Query: 219 PKMGLFESANKGTI-FLDEIAEMPLQLQSKLLRVVQEKEITRL----GDNKSVKIDVRFI 273
+ S +G + F+DEI + ++ L +++ +I + KS++ID++
Sbjct: 94 --AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151
Query: 274 SATNANMKEKIAAKEFREDLFFRLQIVPITIAPLRERVEEILPIAEIKLKE 324
+ A + + + R L++ T+ L+E ++ + ++++++
Sbjct: 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIED 202
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
Length = 350
Score = 32.3 bits (72), Expect = 0.091
Identities = 31/117 (26%), Positives = 48/117 (40%), Gaps = 15/117 (12%)
Query: 222 GLFESANKGTIFLDEIAEMPLQLQSKLLRVVQEKEITRLGDNKSVKIDVRFISATNANMK 281
GL AN+G +++DE + + LL V Q E D S++ RF+ + N +
Sbjct: 138 GLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPE 197
Query: 282 EKIAAKEFREDLF--FRLQIVPITIAPLRERVEEILPIAEIKLKEVCDAYHLGPKSF 336
E + R L F L + ++ + RVE I D Y PK+F
Sbjct: 198 E----GDLRPQLLDRFGLSVEVLSPRDVETRVEVI---------RRRDTYDADPKAF 241
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 31.6 bits (70), Expect = 0.16
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 118 FQKKHPLEKPLKKPHKHSFLAASKALEESKRQALKV---------ASTDANVMLLGESGV 168
F++K L+ PL A+ LEE+ RQ ++ T +++ G + +
Sbjct: 1 FRRKEDLDPPLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAAL 60
Query: 169 GKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELF 206
G +V H+ + + M +PEHL S+LF
Sbjct: 61 GADVHPFIPHRLEEG-----YGVLMERVPEHLEASDLF 93
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 27.3 bits (59), Expect = 2.9
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 19/89 (21%)
Query: 152 KVASTDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKG 211
K+A D LL +S V + Q ++R+ H F I +AIPE L +
Sbjct: 256 KIAGADIETYLLEKSRVTYQ-------QSAERNYHIFYQICSNAIPE--LNDVML----- 301
Query: 212 AFTDATAPKMGLFESANKGTIFLDEIAEM 240
P GL+ N+G + +D I ++
Sbjct: 302 -----VTPDSGLYSFINQGCLTVDNIDDV 325
>pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1B7T|A Chain A, Myosin Digested By Papain
Length = 835
Score = 27.3 bits (59), Expect = 2.9
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 19/89 (21%)
Query: 152 KVASTDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKG 211
K+A D LL +S V + Q ++R+ H F I +AIPE L +
Sbjct: 256 KIAGADIETYLLEKSRVTYQ-------QSAERNYHIFYQICSNAIPE--LNDVML----- 301
Query: 212 AFTDATAPKMGLFESANKGTIFLDEIAEM 240
P GL+ N+G + +D I ++
Sbjct: 302 -----VTPDSGLYSFINQGCLTVDNIDDV 325
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 831
Score = 27.3 bits (59), Expect = 2.9
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 19/89 (21%)
Query: 152 KVASTDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKG 211
K+A D LL +S V + Q ++R+ H F I +AIPE L +
Sbjct: 252 KIAGADIETYLLEKSRVTYQ-------QSAERNYHIFYQICSNAIPE--LNDVML----- 297
Query: 212 AFTDATAPKMGLFESANKGTIFLDEIAEM 240
P GL+ N+G + +D I ++
Sbjct: 298 -----VTPDSGLYSFINQGCLTVDNIDDV 321
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 27.3 bits (59), Expect = 2.9
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 19/89 (21%)
Query: 152 KVASTDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGYQKG 211
K+A D LL +S V + Q ++R+ H F I +AIPE L +
Sbjct: 251 KIAGADIETYLLEKSRVTYQ-------QSAERNYHIFYQICSNAIPE--LNDVML----- 296
Query: 212 AFTDATAPKMGLFESANKGTIFLDEIAEM 240
P GL+ N+G + +D I ++
Sbjct: 297 -----VTPDSGLYSFINQGCLTVDNIDDV 320
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 27.3 bits (59), Expect = 2.9
Identities = 26/91 (28%), Positives = 36/91 (38%), Gaps = 13/91 (14%)
Query: 144 EESKRQALKVAS--TDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLL 201
+E R+ ++V T N +L+GE GVGK + Q I +PE L
Sbjct: 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR----------IINGEVPEGLK 77
Query: 202 ESELFGYQKGAFTDATAPKMGLFESANKGTI 232
+ GA A A G FE KG +
Sbjct: 78 GRRVLALDMGALV-AGAKYRGEFEERLKGVL 107
>pdb|1B9K|A Chain A, Alpha-Adaptin Appendage Domain, From Clathrin Adaptor Ap2
Length = 238
Score = 26.9 bits (58), Expect = 3.8
Identities = 21/81 (25%), Positives = 37/81 (44%), Gaps = 13/81 (16%)
Query: 68 GKYESIVITGNATLNKAIDSIRLGVKDFFQK---PFKPELLLESIYRTKKVLEFQKKHPL 124
G ++++ + TLNK + +DFFQ+ P+ +++I F+ KHP+
Sbjct: 109 GTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNI--------FKAKHPM 160
Query: 125 EKPLKKPHKHSFLAASKALEE 145
+ + K F S LEE
Sbjct: 161 DTEITKAKIIGF--GSALLEE 179
>pdb|1KY6|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KY7|A Chain A, The Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Amphiphysin Fxdxf
pdb|1KYD|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KYF|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
pdb|1KYU|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
pdb|1QTS|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha-
Appendage
Length = 247
Score = 26.9 bits (58), Expect = 3.8
Identities = 21/81 (25%), Positives = 37/81 (44%), Gaps = 13/81 (16%)
Query: 68 GKYESIVITGNATLNKAIDSIRLGVKDFFQK---PFKPELLLESIYRTKKVLEFQKKHPL 124
G ++++ + TLNK + +DFFQ+ P+ +++I F+ KHP+
Sbjct: 118 GTFQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNI--------FKAKHPM 169
Query: 125 EKPLKKPHKHSFLAASKALEE 145
+ + K F S LEE
Sbjct: 170 DTEITKAKIIGF--GSALLEE 188
>pdb|1COY| Cholesterol Oxidase (E.C.1.1.3.6) Complex With
3-Beta-Hydroxy-5-Androsten-17-One
(Dehydroisoandrosterone)
pdb|3COX| Cholesterol Oxidase (E.C.1.1.3.6)
Length = 507
Score = 26.6 bits (57), Expect = 5.0
Identities = 27/93 (29%), Positives = 40/93 (42%), Gaps = 14/93 (15%)
Query: 216 ATAPKMGLFESANKGTIFLDEIAEMPLQLQ---SKLLRVVQEKEITRLGDNKSV-KIDVR 271
AT P MG+ A+ EIA +P L+ S L + + E R N K+D+
Sbjct: 341 ATIPTMGIDNWADPTAPIFAEIAPLPAGLETYVSLYLAITKNPERARFQFNSGTGKVDLT 400
Query: 272 FISATN-------ANMKEKIAAKE---FREDLF 294
+ + N + +KI KE +R DLF
Sbjct: 401 WAQSQNQKGIDMAKKVFDKINQKEGTIYRTDLF 433
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 25.8 bits (55), Expect = 8.6
Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 4/91 (4%)
Query: 149 QALKVASTDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGY 208
+ L+ T N++++G +GVGK A + ++ + PFI + + E +
Sbjct: 42 EELRHEVTPKNILMIGPTGVGKTEIARRL---AKLANAPFIKVEATKFTEVGYVGKEVDS 98
Query: 209 QKGAFTDATAPKMGLFESANKGTIFLDEIAE 239
TDA A KM ++ K +E+AE
Sbjct: 99 IIRDLTDA-AVKMVRVQAIEKNRYRAEELAE 128
>pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
Length = 82
Score = 25.8 bits (55), Expect = 8.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 8 DDINMRKSLELFFELQDDLEIVSFKNPKDALAKLDESFDLVITDINMPHMDGLEFLRLLE 67
+D +MR LE D L S ++ + L ++ES D I + M G + R+ E
Sbjct: 3 EDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEE 62
Query: 68 G 68
G
Sbjct: 63 G 63
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 25.8 bits (55), Expect = 8.6
Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 4/91 (4%)
Query: 149 QALKVASTDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGY 208
+ L+ T N++++G +GVGK A + ++ + PFI + + E +
Sbjct: 41 EELRHEVTPKNILMIGPTGVGKTEIARRL---AKLANAPFIKVEATKFTEVGYVGKEVDS 97
Query: 209 QKGAFTDATAPKMGLFESANKGTIFLDEIAE 239
TDA A KM ++ K +E+AE
Sbjct: 98 IIRDLTDA-AVKMVRVQAIEKNRYRAEELAE 127
>pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 25.8 bits (55), Expect = 8.6
Identities = 14/52 (26%), Positives = 26/52 (49%)
Query: 97 QKPFKPELLLESIYRTKKVLEFQKKHPLEKPLKKPHKHSFLAASKALEESKR 148
+KP+K +S ++ + + Q+ H EKP K P + S L++ +R
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 25.8 bits (55), Expect = 8.6
Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 4/91 (4%)
Query: 149 QALKVASTDANVMLLGESGVGKEVFAHFIHQHSQRSKHPFIAINMSAIPEHLLESELFGY 208
+ L+ T N++++G +GVGK A + ++ + PFI + + E +
Sbjct: 48 EELRHEVTPKNILMIGPTGVGKTEIARRL---AKLANAPFIKVEATKFTEVGYVGKEVDS 104
Query: 209 QKGAFTDATAPKMGLFESANKGTIFLDEIAE 239
TDA A KM ++ K +E+AE
Sbjct: 105 IIRDLTDA-AVKMVRVQAIEKNRYRAEELAE 134
>pdb|1UOX| Urate Oxidase From Aspergillus Flavus Complexed With Its Inhibitor
8-Azaxanthine
Length = 296
Score = 25.8 bits (55), Expect = 8.6
Identities = 24/89 (26%), Positives = 37/89 (40%), Gaps = 12/89 (13%)
Query: 65 LLEGKYESIVITGNATLNKAIDSIRLGVK-DFFQKPFKPELLLESIYRTKKVLEFQKKHP 123
LLEG+ E+ + ++ A DSI+ + Q P P L SI T + ++ H
Sbjct: 38 LLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHA 97
Query: 124 LEKPLK-----------KPHKHSFLAASK 141
+ KPH HSF+ S+
Sbjct: 98 AHVNIVCHRWTRMDIDGKPHPHSFIRDSE 126
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,934,765
Number of Sequences: 13198
Number of extensions: 76743
Number of successful extensions: 278
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 65
length of query: 381
length of database: 2,899,336
effective HSP length: 90
effective length of query: 291
effective length of database: 1,711,516
effective search space: 498051156
effective search space used: 498051156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)