BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645329|ref|NP_207500.1| outer membrane protein
(omp15) [Helicobacter pylori 26695]
(273 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1RRA|A Chain A, Ribonuclease A From Rattus Norvegicus (... 30 0.39
pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase... 27 2.5
pdb|1CYY|B Chain B, Crystal Structure Of The 30 Kda Fragmen... 25 7.3
pdb|1ECL| Amino Terminal 67kda Domain Of Escherichia Coli... 25 7.3
pdb|1CY7|A Chain A, Complex Of E.Coli Dna Topoisomerase I W... 25 7.3
>pdb|1RRA|A Chain A, Ribonuclease A From Rattus Norvegicus (Common Rat)
Length = 124
Score = 29.6 bits (65), Expect = 0.39
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 176 SAANYWKEQIIEAKGPDVCTPTYCN 200
S+A+ +K Q ++ +GP +PTYCN
Sbjct: 3 SSADKFKRQHMDTEGPSKSSPTYCN 27
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 26.9 bits (58), Expect = 2.5
Identities = 23/90 (25%), Positives = 39/90 (42%), Gaps = 18/90 (20%)
Query: 67 HNPGGTNINWHAKYANGALNGLGLNVGYKKFFQFKSFDMTSKWFGFRVYGLFDYGHATLG 126
HNP GT++ ++ +G +F++FD +G V + Y H ++
Sbjct: 262 HNPAGTSVQNVLHWSQAVKSG-----------KFQAFD-----WGSPVQNMMHY-HQSM- 303
Query: 127 KQVYAPNKIQLDMVSWGVGSDLLADIIDND 156
Y + + + W G+DLLAD D D
Sbjct: 304 PPYYNLTDMHVPIAVWNGGNDLLADPHDVD 333
>pdb|1CYY|B Chain B, Crystal Structure Of The 30 Kda Fragment Of E. Coli Dna
Topoisomerase I. Hexagonal Form
pdb|1CYY|A Chain A, Crystal Structure Of The 30 Kda Fragment Of E. Coli Dna
Topoisomerase I. Hexagonal Form
pdb|1CY9|A Chain A, Crystal Structure Of The 30 Kda Fragment Of E. Coli Dna
Topoisomerase I. Monoclinic Form
pdb|1CY9|B Chain B, Crystal Structure Of The 30 Kda Fragment Of E. Coli Dna
Topoisomerase I. Monoclinic Form
Length = 264
Score = 25.4 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 14/28 (49%)
Query: 196 PTYCNPNAPYSTKTSTVAFQVWLNFGVR 223
PT P AP+ T T A L FGV+
Sbjct: 62 PTTSKPGAPFITSTLQQAASTRLGFGVK 89
>pdb|1ECL| Amino Terminal 67kda Domain Of Escherichia Coli Dna Topoisomerase
I (Residues 2-590 Of Mature Protein) Cloning Artifact
Adds Two Residues To The Amino-Terminus Which Were Not
Observed In The Experimental Electron Density (Gly-2,
Ser-1)
Length = 597
Score = 25.4 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 14/28 (49%)
Query: 196 PTYCNPNAPYSTKTSTVAFQVWLNFGVR 223
PT P AP+ T T A L FGV+
Sbjct: 275 PTTSKPGAPFITSTLQQAASTRLGFGVK 302
>pdb|1CY7|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'-Thymidine
Monophosphate
pdb|1CY8|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'-Thymidine
Monophosphate And 3'-Thymidine Monophosphate
pdb|1CY6|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3' Thymidine
Monophosphate
pdb|1CY4|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptptp3'
pdb|1CY1|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt
pdb|1CY2|A Chain A, Complex Of E.Coli Dna Topoisomerase I With Tptptp3'
pdb|1CY0|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3'-5'-Adenosine
Diphosphate
Length = 599
Score = 25.4 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 14/28 (49%)
Query: 196 PTYCNPNAPYSTKTSTVAFQVWLNFGVR 223
PT P AP+ T T A L FGV+
Sbjct: 277 PTTSKPGAPFITSTLQQAASTRLGFGVK 304
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,880,914
Number of Sequences: 13198
Number of extensions: 89667
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 5
length of query: 273
length of database: 2,899,336
effective HSP length: 87
effective length of query: 186
effective length of database: 1,751,110
effective search space: 325706460
effective search space used: 325706460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)