BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645330|ref|NP_207501.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(308 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Bind... 28 1.7
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 28 1.7
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 28 1.7
pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvat... 27 2.3
pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose... 27 2.3
pdb|1KSK|A Chain A, Structure Of Rsua >gi|20664191|pdb|1KSL... 27 2.3
pdb|1COP|D Chain D, Mol_id: 1; Molecule: Cro Repressor; Cha... 27 2.9
pdb|6CRO|A Chain A, Crystal Structure Of Lambda-Cro Bound T... 27 2.9
pdb|1UOK| Crystal Structure Of B. Cereus Oligo-1,6-Glucos... 26 6.6
pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From ... 25 8.6
pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549 >g... 25 8.6
pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4 >gi|12... 25 8.6
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 27.7 bits (60), Expect = 1.7
Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Query: 94 NKEIKGVLVDLGVSSLQLDDDNRGFNFHSHTLDMRMDLESELNAQKVINSYPIVA-LEKI 152
N EI +L D+ + Q DDD+ GF+F+ +++ + L A+ +S+ +A ++
Sbjct: 495 NDEIFSILKDVPNPN-QDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEV 553
Query: 153 FRDYGEIKEYK 163
F+ E E K
Sbjct: 554 FKTLAESDEGK 564
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 27.7 bits (60), Expect = 1.7
Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Query: 94 NKEIKGVLVDLGVSSLQLDDDNRGFNFHSHTLDMRMDLESELNAQKVINSYPIVA-LEKI 152
N EI +L D+ + Q DDD+ GF+F+ +++ + L A+ +S+ +A ++
Sbjct: 495 NDEIFSILKDVPNPN-QDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEV 553
Query: 153 FRDYGEIKEYK 163
F+ E E K
Sbjct: 554 FKTLAESDEGK 564
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 27.7 bits (60), Expect = 1.7
Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Query: 94 NKEIKGVLVDLGVSSLQLDDDNRGFNFHSHTLDMRMDLESELNAQKVINSYPIVA-LEKI 152
N EI +L D+ + Q DDD+ GF+F+ +++ + L A+ +S+ +A ++
Sbjct: 495 NDEIFSILKDVPNPN-QDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEV 553
Query: 153 FRDYGEIKEYK 163
F+ E E K
Sbjct: 554 FKTLAESDEGK 564
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 27.3 bits (59), Expect = 2.3
Identities = 18/51 (35%), Positives = 22/51 (42%), Gaps = 10/51 (19%)
Query: 34 GLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKERLKAFEGRYNLLSGGFAK 84
GL G K LS PH LIG D E + G +N+ G +AK
Sbjct: 220 GLSGTGKTTLSADPHRNLIGDD----------EHVWTDRGVFNIEGGCYAK 260
>pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
Motility FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE Phosphate Inhibitors And Its Substrate
Recognition Mechanis
pdb|1B0Z|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
pdb|2PGI| The Crystal Structure Of Phosphoglucose Isomerase - An Enzyme With
Autocrine Motility Factor Activity In Tumor Cells
pdb|1C7R|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
Motility FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE Phosphate Inhibitors And Its Substrate
Recognition Mechanis
Length = 445
Score = 27.3 bits (59), Expect = 2.3
Identities = 35/139 (25%), Positives = 60/139 (42%), Gaps = 10/139 (7%)
Query: 52 IGIDKDKFAQ-EIAKERLKAFEGRYNLLS-GGFAKRFKEALETHNKEIKGVLVDLGVSSL 109
I DK++F++ + A ER++ ++ GG + A+E + + D + +
Sbjct: 51 IRYDKNEFSRIKQAAERIRNHSDALVVIGIGGSYLGARAAIEALSHTFHNQMND--TTQI 108
Query: 110 QLDDDNRGFNFHSHTLDMR--MDLESELNAQKVINSYPIVALEKIFRDYGEIKEYKKIAH 167
N + SH LD+ DL + ++ + P +A +IFRDY E K K+ A
Sbjct: 109 YFAGQNISSTYISHLLDVLEGKDLSINVISKSGTTTEPAIAF-RIFRDYMEKKYGKEEAR 167
Query: 168 K---IAERRAKKPFKNAKD 183
K + R K K D
Sbjct: 168 KRIYVTTDRTKGALKKLAD 186
>pdb|1KSK|A Chain A, Structure Of Rsua
pdb|1KSL|A Chain A, Structure Of Rsua
pdb|1KSV|A Chain A, Structure Of Rsua
Length = 234
Score = 27.3 bits (59), Expect = 2.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 67 RLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVD 103
RL EGRY+ + FA +E H + I G+ +D
Sbjct: 178 RLTISEGRYHQVKRXFAAVGNHVVELHRERIGGITLD 214
>pdb|1COP|D Chain D, Mol_id: 1; Molecule: Cro Repressor; Chain: D, E;
Engineered: Yes
pdb|1COP|E Chain E, Mol_id: 1; Molecule: Cro Repressor; Chain: D, E;
Engineered: Yes
pdb|5CRO|O Chain O, Refined Structure Of Cro Repressor Protein From
Bacteriophage Lambda
pdb|5CRO|A Chain A, Refined Structure Of Cro Repressor Protein From
Bacteriophage Lambda
pdb|5CRO|B Chain B, Refined Structure Of Cro Repressor Protein From
Bacteriophage Lambda
pdb|5CRO|C Chain C, Refined Structure Of Cro Repressor Protein From
Bacteriophage Lambda
pdb|4CRO|A Chain A, Cro Repressor
pdb|4CRO|B Chain B, Cro Repressor
pdb|4CRO|C Chain C, Cro Repressor
pdb|4CRO|D Chain D, Cro Repressor
pdb|4CRO|E Chain E, Cro Repressor
pdb|4CRO|F Chain F, Cro Repressor
Length = 66
Score = 26.9 bits (58), Expect = 2.9
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 179 KNAKDLSEFLSSFSKNKKIHPATLVFQAVRIEVNSELEELKEF 221
K AKDL + S+ NK IH +F + + + EE+K F
Sbjct: 18 KTAKDLGVYQSAI--NKAIHAGRKIFLTINADGSVYAEEVKPF 58
>pdb|6CRO|A Chain A, Crystal Structure Of Lambda-Cro Bound To A Consensus
Operator At 3.0 Angstrom Resolution
Length = 60
Score = 26.9 bits (58), Expect = 2.9
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 179 KNAKDLSEFLSSFSKNKKIHPATLVFQAVRIEVNSELEELKEF 221
K AKDL + S+ NK IH +F + + + EE+K F
Sbjct: 17 KTAKDLGVYQSAI--NKAIHAGRKIFLTINADGSVYAEEVKPF 57
>pdb|1UOK| Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 25.8 bits (55), Expect = 6.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 142 NSYPIVALEKIFRDYGEIKEYKKIAHKIAERRAK 175
N Y I KI ++G ++++ ++ H++ ER K
Sbjct: 61 NGYDISDYCKIMNEFGTMEDWDELLHEMHERNMK 94
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
Length = 605
Score = 25.4 bits (54), Expect = 8.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 151 KIFRDYGEIKEYKKIAHKIAERRAKKPFKN 180
K+ R Y ++KE ++I+ +IA AK +KN
Sbjct: 520 KVGRVYPQLKEIREISIQIAVEMAKYCYKN 549
>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
Length = 129
Score = 25.4 bits (54), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 264 FKCACSNNHALGEILTKKPITPSPEEI 290
F AC+ HALG T + SPE +
Sbjct: 31 FNAACAQCHALGVTRTNPDVNLSPEAL 57
>pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4
pdb|1FU1|A Chain A, Crystal Structure Of Human Xrcc4
Length = 203
Score = 25.4 bits (54), Expect = 8.6
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 179 KNAKDLSEFLSSFSKNKKIHPATLVFQAV--RIEVNSELEELKEFLQ 223
KN KD+S L SF+ K +PA ++ + + ++ +E + E LQ
Sbjct: 99 KNLKDVSFRLGSFNLEKVENPAEVIRELIXYXLDTTAENQAKNEHLQ 145
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,653,240
Number of Sequences: 13198
Number of extensions: 65886
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 12
length of query: 308
length of database: 2,899,336
effective HSP length: 88
effective length of query: 220
effective length of database: 1,737,912
effective search space: 382340640
effective search space used: 382340640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)