BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644702|ref|NP_206872.1| urease beta subunit (urea
amidohydrolase) (ureB) [Helicobacter pylori 26695]
(569 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylor... 1139 0.0
pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylor... 1137 0.0
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease ... 730 0.0
pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii ... 729 0.0
pdb|2KAU|C Chain C, Molecule: Klebsiella Aerogenes Urease; ... 716 0.0
pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native 714 0.0
pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes U... 713 0.0
pdb|1KRC|C Chain C, Active Site Mutant, Nickel Metalloenzym... 712 0.0
pdb|1KRB|C Chain C, Active Site Mutant, Nickel Metalloenzym... 712 0.0
pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substitu... 712 0.0
pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes U... 712 0.0
pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes U... 711 0.0
pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant ... 711 0.0
pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant ... 711 0.0
pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant ... 711 0.0
pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant ... 711 0.0
pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant ... 711 0.0
pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Vari... 711 0.0
pdb|1FWI|C Chain C, Klebsiella Aerogenes Urease, H134a Variant 710 0.0
pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant 710 0.0
pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant 710 0.0
pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant 709 0.0
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes U... 708 0.0
pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) Fr... 45 3e-05
pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase >gi... 42 1e-04
pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) Fr... 37 0.006
pdb|1KCW| X-Ray Crystal Structure Of Human Ceruloplasmin ... 27 6.1
pdb|1EAP|B Chain B, 17e8 Complexed With Phenyl [1-(1-N-Succ... 27 6.1
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 27 8.0
pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Fl... 27 8.0
pdb|1BQG| The Structure Of The D-Glucarate Dehydratase Pr... 27 8.0
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 27 8.0
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 27 8.0
pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymeth... 27 8.0
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-... 27 8.0
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 1139 bits (2946), Expect = 0.0
Identities = 565/569 (99%), Positives = 567/569 (99%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN
Sbjct: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA
Sbjct: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK
Sbjct: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGF IHEDWGTTPSAINHALDVADK
Sbjct: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFXIHEDWGTTPSAINHALDVADK 240
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST
Sbjct: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMG FSITS
Sbjct: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITS 360
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS
Sbjct: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA
Sbjct: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRN+TKKDMQFN+TTAHIEVNP
Sbjct: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNP 540
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
ETYHVFVDGKEVTSKPANKVSLAQLFSIF
Sbjct: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 1137 bits (2940), Expect = 0.0
Identities = 564/569 (99%), Positives = 566/569 (99%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN
Sbjct: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA
Sbjct: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK
Sbjct: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGF IHEDWGTTPSAINHALDVADK
Sbjct: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFXIHEDWGTTPSAINHALDVADK 240
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST
Sbjct: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPTIPFTVNTEAEHMDMLMVCHH DKSIKEDVQFADSRIRPQTIAAEDTLHDMG FSITS
Sbjct: 301 NPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITS 360
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS
Sbjct: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA
Sbjct: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRN+TKKDMQFN+TTAHIEVNP
Sbjct: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNP 540
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
ETYHVFVDGKEVTSKPANKVSLAQLFSIF
Sbjct: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
>pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
Length = 570
Score = 730 bits (1884), Expect = 0.0
Identities = 351/569 (61%), Positives = 447/569 (77%), Gaps = 2/569 (0%)
Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPS 62
KI+R++Y YGPT GD+VRL DTDL EVE DYT YG+E+ FGGGK LREGM ++ +
Sbjct: 2 KINRQQYAESYGPTVGDEVRLADTDLWIEVEKDYTTYGDEVNFGGGKVLREGMGENGTYT 61
Query: 63 KEE--LDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ E LDL++TNALI+DYTGIYKADIG+KDG I GIGKGGN D+ DGV N+ VG ATE
Sbjct: 62 RTENVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEV 121
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTH+HFI+P Q+ A A+G+TT+ GGGTGPA+G+ ATT+TPG N++
Sbjct: 122 IAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIE 181
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML++ E +N+G L KG+ S+ A + +QI+AGA G IHEDWG TP++I+ +L VAD+
Sbjct: 182 KMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLXIHEDWGATPASIDRSLTVADE 241
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
DVQVAIH+DTLNEAG +EDT+ AI GR +H+FH EGAGGGHAPDI+ +AG N+LP+ST
Sbjct: 242 ADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSST 301
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT PFTVNT EH+DMLMVCHHL ++I EDV FADSRIRP+TIAAED LHD+GI S+ S
Sbjct: 302 NPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMS 361
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
+D+ AMGR GE++ RTWQTADK KK+ G L EEK +DNFR+KRY+SKYTINPAIA GI+
Sbjct: 362 TDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIA 421
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+E GK ADLVLW P FFGVK + +IKGG IA +Q+GD +ASIPTPQPV R M+
Sbjct: 422 HEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVMGRRMYG 481
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G +D NITF+S+++ +G+ +LGL+R++ VKNCRNI KKDM++ND T I++NP
Sbjct: 482 TVGDLIHDTNITFMSKSSIQQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINP 541
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
ETY V VDG+ +T +P ++ +AQ + +F
Sbjct: 542 ETYEVKVDGEVLTCEPVKELPMAQRYFLF 570
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 729 bits (1883), Expect = 0.0
Identities = 351/569 (61%), Positives = 446/569 (77%), Gaps = 2/569 (0%)
Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPS 62
KI+R++Y YGPT GD+VRL DTDL EVE DYT YG+E+ FGGGK LREGM ++ +
Sbjct: 2 KINRQQYAESYGPTVGDEVRLADTDLWIEVEKDYTTYGDEVNFGGGKVLREGMGENGTYT 61
Query: 63 KEE--LDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ E LDL++TNALI+DYTGIYKADIG+KDG I GIGKGGN D+ DGV N+ VG ATE
Sbjct: 62 RTENVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEV 121
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTH+HFI+P Q+ A A+G+TT+ GGGTGPA+G+ ATT+TPG N++
Sbjct: 122 IAAEGKIVTAGGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIE 181
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML++ E +N+G L KG+ S+ A + +QI+AGA G IHEDWG TP++I+ +L VAD+
Sbjct: 182 KMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLXIHEDWGATPASIDRSLTVADE 241
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
DVQVAIH+DTLNEAG +EDT+ AI GR +H+FH EGAGGGHAPDI+ +AG N+LP+ST
Sbjct: 242 ADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSST 301
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT PFTVNT EH+DMLMVCHHL +I EDV FADSRIRP+TIAAED LHD+GI S+ S
Sbjct: 302 NPTRPFTVNTIDEHLDMLMVCHHLKNNIPEDVAFADSRIRPETIAAEDILHDLGIISMMS 361
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
+D+ AMGR GE++ RTWQTADK KK+ G L EEK +DNFR+KRY+SKYTINPAIA GI+
Sbjct: 362 TDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIA 421
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+E GK ADLVLW P FFGVK + +IKGG IA +Q+GD +ASIPTPQPV R M+
Sbjct: 422 HEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIAYAQIGDPSASIPTPQPVMGRRMYG 481
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G +D NITF+S+++ +G+ +LGL+R++ VKNCRNI KKDM++ND T I++NP
Sbjct: 482 TVGDLIHDTNITFMSKSSIQQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINP 541
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
ETY V VDG+ +T +P ++ +AQ + +F
Sbjct: 542 ETYEVKVDGEVLTCEPVKELPMAQRYFLF 570
>pdb|2KAU|C Chain C, Molecule: Klebsiella Aerogenes Urease; Ec: 3.5.1.5;
Synonyms: Urea Amidohydrolase, Urease; Engineered
pdb|1KRA|C Chain C, Apoenzyme, Nickel Metalloenzyme Mol_id: 1; Molecule:
Urease; Chain: A, B, C; Ec: 3.5.1.5
Length = 567
Score = 716 bits (1849), Expect = 0.0
Identities = 352/569 (61%), Positives = 431/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG KIHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
Length = 567
Score = 714 bits (1843), Expect = 0.0
Identities = 351/569 (61%), Positives = 430/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 713 bits (1840), Expect = 0.0
Identities = 350/566 (61%), Positives = 430/566 (75%), Gaps = 2/566 (0%)
Query: 4 ISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSK 63
ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q +
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQMLAA 62
Query: 64 EELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAG 123
+ +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE +A
Sbjct: 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIAA 120
Query: 124 EGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWML 183
EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG + ML
Sbjct: 121 EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML 180
Query: 184 RAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDV 243
+AA+ +N+G L KGN S +L +Q+ AG IG +IHEDWG TP+AI+ AL VAD+ D+
Sbjct: 181 QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLEIHEDWGATPAAIDCALTVADEMDI 240
Query: 244 QVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPT 303
QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+STNPT
Sbjct: 241 QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT 300
Query: 304 IPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDS 363
+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TSSDS
Sbjct: 301 LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS 360
Query: 364 QAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYV 423
QAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+ V
Sbjct: 361 QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV 420
Query: 424 GSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHG 483
GS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF G
Sbjct: 421 GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG 480
Query: 484 KAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETY 543
A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+ +TY
Sbjct: 481 SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY 540
Query: 544 HVFVDGKEVTSKPANKVSLAQLFSIF 569
V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 541 EVRVDGELITSEPADVLPMAQRYFLF 566
>pdb|1KRC|C Chain C, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
H(C 320)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
Length = 567
Score = 712 bits (1839), Expect = 0.0
Identities = 351/569 (61%), Positives = 430/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG KIHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVC HLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCAHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1KRB|C Chain C, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
H(C 219)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
Length = 567
Score = 712 bits (1839), Expect = 0.0
Identities = 351/569 (61%), Positives = 430/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG KI EDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLKIAEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
Length = 566
Score = 712 bits (1838), Expect = 0.0
Identities = 350/566 (61%), Positives = 429/566 (74%), Gaps = 2/566 (0%)
Query: 4 ISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSK 63
ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q +
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQMLAA 62
Query: 64 EELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAG 123
+ +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE +A
Sbjct: 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIAA 120
Query: 124 EGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWML 183
EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG + ML
Sbjct: 121 EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML 180
Query: 184 RAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDV 243
+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+ D+
Sbjct: 181 QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADEMDI 240
Query: 244 QVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPT 303
QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+STNPT
Sbjct: 241 QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT 300
Query: 304 IPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDS 363
+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TSSDS
Sbjct: 301 LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS 360
Query: 364 QAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYV 423
QAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+ V
Sbjct: 361 QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV 420
Query: 424 GSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHG 483
GS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF G
Sbjct: 421 GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG 480
Query: 484 KAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETY 543
A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+ +TY
Sbjct: 481 SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY 540
Query: 544 HVFVDGKEVTSKPANKVSLAQLFSIF 569
V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 541 EVRVDGELITSEPADVLPMAQRYFLF 566
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 712 bits (1838), Expect = 0.0
Identities = 350/566 (61%), Positives = 429/566 (74%), Gaps = 2/566 (0%)
Query: 4 ISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSK 63
ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q +
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQMLAA 62
Query: 64 EELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAG 123
+ +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE +A
Sbjct: 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIAA 120
Query: 124 EGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWML 183
EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG + ML
Sbjct: 121 EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML 180
Query: 184 RAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDV 243
+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+ D+
Sbjct: 181 QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLAIHEDWGATPAAIDCALTVADEMDI 240
Query: 244 QVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPT 303
QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+STNPT
Sbjct: 241 QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT 300
Query: 304 IPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDS 363
+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TSSDS
Sbjct: 301 LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS 360
Query: 364 QAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYV 423
QAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+ V
Sbjct: 361 QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV 420
Query: 424 GSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHG 483
GS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF G
Sbjct: 421 GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG 480
Query: 484 KAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETY 543
A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+ +TY
Sbjct: 481 SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY 540
Query: 544 HVFVDGKEVTSKPANKVSLAQLFSIF 569
V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 541 EVRVDGELITSEPADVLPMAQRYFLF 566
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 711 bits (1836), Expect = 0.0
Identities = 350/566 (61%), Positives = 429/566 (74%), Gaps = 2/566 (0%)
Query: 4 ISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSK 63
ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q +
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQMLAA 62
Query: 64 EELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAG 123
+ +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE +A
Sbjct: 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIAA 120
Query: 124 EGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWML 183
EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG + ML
Sbjct: 121 EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML 180
Query: 184 RAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDV 243
+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+ D+
Sbjct: 181 QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLCIHEDWGATPAAIDCALTVADEMDI 240
Query: 244 QVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPT 303
QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+STNPT
Sbjct: 241 QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT 300
Query: 304 IPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDS 363
+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TSSDS
Sbjct: 301 LPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS 360
Query: 364 QAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYV 423
QAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+ V
Sbjct: 361 QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV 420
Query: 424 GSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHG 483
GS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF G
Sbjct: 421 GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG 480
Query: 484 KAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETY 543
A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+ +TY
Sbjct: 481 SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY 540
Query: 544 HVFVDGKEVTSKPANKVSLAQLFSIF 569
V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 541 EVRVDGELITSEPADVLPMAQRYFLF 566
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 711 bits (1836), Expect = 0.0
Identities = 350/569 (61%), Positives = 430/569 (75%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVC+HLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCNHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 711 bits (1836), Expect = 0.0
Identities = 350/569 (61%), Positives = 430/569 (75%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG I+EDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXINEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 711 bits (1835), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG I EDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIQEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 711 bits (1835), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVC HLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCQHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 711 bits (1835), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHE WG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEAWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 711 bits (1834), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMV HHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVAHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1FWI|C Chain C, Klebsiella Aerogenes Urease, H134a Variant
Length = 567
Score = 710 bits (1833), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDT IH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTAIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMVCHHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 710 bits (1833), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMV HHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVSHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 710 bits (1832), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMV HHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVYHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 709 bits (1831), Expect = 0.0
Identities = 350/569 (61%), Positives = 429/569 (74%), Gaps = 2/569 (0%)
Query: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNN 60
M ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q
Sbjct: 1 MSNISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQM 60
Query: 61 PSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 120
+ + +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE
Sbjct: 61 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEV 118
Query: 121 LAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
+A EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG +
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYIS 178
Query: 181 WMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADK 240
ML+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLXIHEDWGATPAAIDCALTVADE 238
Query: 241 YDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 300
D+QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+ST
Sbjct: 239 MDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSST 298
Query: 301 NPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITS 360
NPT+P+T+NT EH+DMLMV HHLD I EDV FA+SRIR +TIAAED LHD+G FS+TS
Sbjct: 299 NPTLPYTLNTIDEHLDMLMVDHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTS 358
Query: 361 SDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS 420
SDSQAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+
Sbjct: 359 SDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 418
Query: 421 EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFA 480
VGS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF
Sbjct: 419 HEVGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFG 478
Query: 481 HHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNP 540
G A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+
Sbjct: 479 ALGSARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDA 538
Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569
+TY V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 539 QTYEVRVDGELITSEPADVLPMAQRYFLF 567
>pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 708 bits (1827), Expect = 0.0
Identities = 349/566 (61%), Positives = 428/566 (74%), Gaps = 2/566 (0%)
Query: 4 ISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSK 63
ISR+ Y M+GPT GDKVRL DT+L EVE D T YGEE+KFGGGK +R+GM Q +
Sbjct: 3 ISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQMLAA 62
Query: 64 EELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAG 123
+ +DL++TNALIVD+ GI KADIG+KDG+I IGK GN D+Q V + +G ATE +A
Sbjct: 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNV--TIPIGAATEVIAA 120
Query: 124 EGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWML 183
EG IVTAGGIDTHIH+I PQQ A SGVTTM+GGGTGPA GT+ATT TPG + ML
Sbjct: 121 EGKIVTAGGIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRML 180
Query: 184 RAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDV 243
+AA+ +N+G L KGN S +L +Q+ AG IG IHEDWG TP+AI+ AL VAD+ D+
Sbjct: 181 QAADSLPVNIGLLGKGNVSQPDALREQVAAGVIGLCIHEDWGATPAAIDCALTVADEMDI 240
Query: 244 QVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPT 303
QVA+H+DTLNE+G VEDT+AAI GRT+HTFHTEGAGGGHAPDII NILP+STNPT
Sbjct: 241 QVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPT 300
Query: 304 IPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDS 363
+P+T+NT EH+DMLMV HHLD I EDV FA+SRIR +TIAAED LHD+G FS+TSSDS
Sbjct: 301 LPYTLNTIDEHLDMLMVAHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDS 360
Query: 364 QAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYV 423
QAMGRVGEVI RTWQ A + K + G L EE GDNDNFR+KRY++KYTINPA+ HGI+ V
Sbjct: 361 QAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEV 420
Query: 424 GSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHG 483
GS+EVGK+ADLV+WSPAFFGVKP +IKGG IA++ MGD NASIPTPQPV+YR MF G
Sbjct: 421 GSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIPTPQPVHYRPMFGALG 480
Query: 484 KAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETY 543
A++ +TF+SQAA G+ E L L + VK CR + K DM N +I V+ +TY
Sbjct: 481 SARHHCRLTFLSQAAAANGVAERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTY 540
Query: 544 HVFVDGKEVTSKPANKVSLAQLFSIF 569
V VDG+ +TS+PA+ + +AQ + +F
Sbjct: 541 EVRVDGELITSEPADVLPMAQRYFLF 566
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 44.7 bits (104), Expect = 3e-05
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 28/162 (17%)
Query: 67 DLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGL 126
D+I+ N +V GI +ADI +KDGK+A I D++ A+ + G
Sbjct: 3 DVIVKNCRLVSSDGITEADILVKDGKVAAI-SADTSDVE-----------ASRTIDAGGK 50
Query: 127 IVTAGGIDTHIHFISPQ----------QIPTAFASGVTTMIGGGTGPADGTNATTITPGR 176
V G +D H+H I +A G+TT+I P TT+
Sbjct: 51 FVMPGVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTII---EMPITFPPTTTLDAFL 107
Query: 177 RNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGF 218
K +A + ++ G N + +AGA+GF
Sbjct: 108 EKKK---QAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGF 146
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 42.4 bits (98), Expect = 1e-04
Identities = 36/96 (37%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 69 IITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIV 128
II N IV T Y+A + IKDGKIA IG+ NL A E + +G V
Sbjct: 4 IIKNGTIVTATDTYEAHLLIKDGKIAMIGQ------------NLEEKGA-EVIDAKGCYV 50
Query: 129 TAGGIDTHIHFISP---QQIPTAFASGVTTMIGGGT 161
GGID H H P F SG GGT
Sbjct: 51 FPGGIDPHTHLDMPLGGTVTKDDFESGTIAAAFGGT 86
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 37.0 bits (84), Expect = 0.006
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 68 LIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLI 127
L+I N I+ YKADI + I IG+ NL P TE + G
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQ------------NLEAPPGTEVIDATGKY 49
Query: 128 VTAGGIDTHIHFISP 142
V G ID H+H P
Sbjct: 50 VFPGFIDPHVHIYLP 64
>pdb|1KCW| X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0 Angstroms
Length = 1046
Score = 26.9 bits (58), Expect = 6.1
Identities = 19/80 (23%), Positives = 36/80 (44%), Gaps = 8/80 (10%)
Query: 304 IPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDS 363
+P E EH+ +L H D K + F + RP +I H G+ + +S+ +
Sbjct: 775 VPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSI------HAHGVQTESSTVT 828
Query: 364 QAMGRVGEVITRTWQTADKN 383
+ GE +T W+ +++
Sbjct: 829 PTL--PGETLTYVWKIPERS 846
>pdb|1EAP|B Chain B, 17e8 Complexed With Phenyl [1-(1-N-Succinylamino)pentyl]
Phosphonate
Length = 216
Score = 26.9 bits (58), Expect = 6.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 106 DGVKNNLSVGPATEALAGEGLIVT--AGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGP 163
D +++++G + E + VT +GG+ + +H P SG+ TM T P
Sbjct: 136 DTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVH-----TFPALLQSGLYTMSSSVTVP 190
Query: 164 ADGTNATTIT 173
G + T+T
Sbjct: 191 GGGWPSATVT 200
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 26.6 bits (57), Expect = 8.0
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 70 ITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQD 106
I ++V+ G K IG K KI IG KDMQ+
Sbjct: 231 INGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQE 267
>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
Length = 398
Score = 26.6 bits (57), Expect = 8.0
Identities = 30/151 (19%), Positives = 55/151 (35%), Gaps = 14/151 (9%)
Query: 151 SGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQ 210
+G T+ GG T P G T T +N++ A + + L + AS+
Sbjct: 201 NGEVTLAGGATSPLTGGLPATATEDVKNVQ---VANADLTEAKAALTAAGVTGTASVVKM 257
Query: 211 IEA--------GAIGFKIHEDWGTTPSAINHALDV-ADKYDVQVAIHTDTLNEAGCVE-- 259
G + K+ +D+ + + ++ + KY LN+ G +
Sbjct: 258 SYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGK 317
Query: 260 DTMAAIAGRTMHTFHTEGAGGGHAPDIIKVA 290
+ +I G+T EG PD+ + A
Sbjct: 318 TEVVSIGGKTYAASKAEGHNFKAQPDLAEAA 348
>pdb|1BQG| The Structure Of The D-Glucarate Dehydratase Protein From
Pseudomonas Putida
Length = 451
Score = 26.6 bits (57), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 371 EVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421
E++ + D+NK + G E + DN+ FR++ +K + P ++E
Sbjct: 152 EMLGYLFYVGDRNKTDLGYRSEHEADNEWFRLR---NKEALTPESVVALAE 199
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 26.6 bits (57), Expect = 8.0
Identities = 19/78 (24%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
Query: 342 QTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFR 401
QT+ L + G+ + +DS + VG+ I + + D +E+G E G ++ R
Sbjct: 793 QTMQIAQELFENGLITYHRTDSTRVSDVGQRIAKEYLGDDFVGREWG----ESGAHECIR 848
Query: 402 IKRYLSKYTINPAIAHGI 419
R L++ + I G+
Sbjct: 849 PTRPLTRDDVQRLIQEGV 866
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 26.6 bits (57), Expect = 8.0
Identities = 19/78 (24%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
Query: 342 QTIAAEDTLHDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFR 401
QT+ L + G+ + +DS + VG+ I + + D +E+G E G ++ R
Sbjct: 793 QTMQIAQELFENGLITYHRTDSTRVSDVGQRIAKEYLGDDFVGREWG----ESGAHECIR 848
Query: 402 IKRYLSKYTINPAIAHGI 419
R L++ + I G+
Sbjct: 849 PTRPLTRDDVQRLIQEGV 866
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-Formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-Formyl Tetrahydrofolate
Length = 419
Score = 26.6 bits (57), Expect = 8.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 120 ALAGEGLIVTAGGIDTHIHFIS--PQQIPTAFASGVTTMIG 158
AL EG + +GG D H+ + PQQ+ A V +G
Sbjct: 295 ALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVG 335
>pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
Length = 459
Score = 26.6 bits (57), Expect = 8.0
Identities = 21/96 (21%), Positives = 34/96 (34%), Gaps = 11/96 (11%)
Query: 9 YVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDL 68
+V + G + G+ + G I E G + FG G N K +
Sbjct: 346 FVEVKGSSIGENTKAGHLTYIGNCE-----VGSNVNFGAGTIT------VNYDGKNKYKT 394
Query: 69 IITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDM 104
+I N + V A + + D + G G KD+
Sbjct: 395 VIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDV 430
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,561,309
Number of Sequences: 13198
Number of extensions: 162219
Number of successful extensions: 409
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 36
length of query: 569
length of database: 2,899,336
effective HSP length: 93
effective length of query: 476
effective length of database: 1,671,922
effective search space: 795834872
effective search space used: 795834872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)