BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645331|ref|NP_207502.1| hypothetical protein
[Helicobacter pylori 26695]
(114 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothet... 25 1.6
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 25 2.1
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichi... 24 3.6
pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Mar... 24 3.6
pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-T... 24 3.6
pdb|1SEK| The Structure Of Active Serpin K From Manduca S... 24 4.7
pdb|1DIN| Dienelactone Hydrolase At 2.8 Angstroms 23 8.0
>pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1083) From Thermotoga Maritima At 2.0 A Resolution
Length = 136
Score = 25.4 bits (54), Expect = 1.6
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 76 LEDQKRLLLEEQQILKNELEKERFKYYIENSEN 108
LE+ + +LLEE+ I+ + EKE+ Y +E +E+
Sbjct: 36 LEEARNILLEEEGIVLDTEEKEK-XYPLEETED 67
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 25.0 bits (53), Expect = 2.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 74 NTLEDQKRLLLEEQQILKNELE 95
N E QKR L EE + LK ELE
Sbjct: 1140 NKAEKQKRDLSEELEALKTELE 1161
>pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal- 5'-Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal- 5'-Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 24.3 bits (51), Expect = 3.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 37 LSLMALIGVLVFGGAFLALLAPKIYLSNNIYYISRKIN 74
L+L A I G +L L +IYL +N+ YI+ K+N
Sbjct: 272 LALTAHIAAYQQGAPWLDAL--RIYLKDNLTYIADKMN 307
>pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Maritima Iclr
pdb|1MKM|B Chain B, Crystal Structure Of The Thermotoga Maritima Iclr
Length = 249
Score = 24.3 bits (51), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 72 KINTLEDQKRLLLEEQQILKNELEKERFK-YYIENSEN 108
KI L+ + + ++LK ELEK R + Y ++N EN
Sbjct: 156 KIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEEN 193
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 24.3 bits (51), Expect = 3.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 60 IYLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDI 112
I L N + I+ L+D K L E+++ E+E K+ IE + ++ ++
Sbjct: 235 IILPNQVDGITALEQKLKDPKALSRAEERLYNTEVEITLPKFKIETTTDLKEV 287
>pdb|1SEK| The Structure Of Active Serpin K From Manduca Sexta And A Model
For Serpin-Protease Complex Formation
Length = 378
Score = 23.9 bits (50), Expect = 4.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 60 IYLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDI 112
I L N + I+ L+D K L E+++ E+E K+ IE + ++ ++
Sbjct: 235 IILPNQVDGITALEQKLKDPKALSRAEERLYNTEVEIYLPKFKIETTTDLKEV 287
>pdb|1DIN| Dienelactone Hydrolase At 2.8 Angstroms
Length = 234
Score = 23.1 bits (48), Expect = 8.0
Identities = 12/45 (26%), Positives = 23/45 (50%), Gaps = 4/45 (8%)
Query: 40 MALIGVLVFGGAFLALLAPKIYLSNNIYY----ISRKINTLEDQK 80
+ L+G GGA L+A K Y+ + Y + +++N + + K
Sbjct: 117 VGLVGYXCLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEVK 161
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.137 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,385
Number of Sequences: 13198
Number of extensions: 19843
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 7
length of query: 114
length of database: 2,899,336
effective HSP length: 76
effective length of query: 38
effective length of database: 1,896,288
effective search space: 72058944
effective search space used: 72058944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)