BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645334|ref|NP_207505.1| hypothetical protein
[Helicobacter pylori 26695]
         (406 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QAN|A  Chain A, The Structure Of The Rrna Methyltransfe...    28  1.4
pdb|1I4X|A  Chain A, Staphylococcal Enterotoxin C2, Monoclin...    26  9.3
pdb|1CE9|A  Chain A, Helix Capping In The Gcn4 Leucine Zippe...    26  9.3

>pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
           Implications For The Reaction Mechanism
 pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
 pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
          Length = 244

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 8/74 (10%)

Query: 272 IKQSVAGLDHCIKEIEKKEMQNKVYSFVSLGVQEDLKYFTENEFKNRYK----DKSNKII 327
           +  S+  L+     I  K+ Q   Y  +    +E  K FT+N+F N  K    D  N I 
Sbjct: 169 VNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNNIS 228

Query: 328 FTKDAEELFTLYNS 341
           F    E+  +L+NS
Sbjct: 229 F----EQFLSLFNS 238



>pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclinic Form
           Crystallized At Ph 8.0
 pdb|1SE2|   Staphylococcal Enterotoxin C2, Monoclinic Form
 pdb|1I4P|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
           Crystallized At Ph 5.5
 pdb|1I4R|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
           Crystallized At Ph 6.5
 pdb|1I4Q|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
           Crystallized At Ph 6.0
 pdb|1STE|   Staphylococcal Enterotoxin C2 From Staphylococcus Aureus
 pdb|1CQV|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
           Crystallized At Ph 5.0
          Length = 239

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 21/71 (29%), Positives = 37/71 (51%), Gaps = 6/71 (8%)

Query: 338 LYNSDEYLGVCGELLKVCD--HLSAFLEAQIS--LSHGISSNDLIKGAQNLLELRSQTEL 393
           L+ S E+ G  G +  + D  ++SA     +   L+H +  N   K  +N  +++  TEL
Sbjct: 11  LHKSSEFTGTMGNMKYLYDDHYVSATKVMSVDKFLAHDLIYNISDKKLKNYDKVK--TEL 68

Query: 394 LDLDLGKLFRD 404
           L+ DL K ++D
Sbjct: 69  LNEDLAKKYKD 79



>pdb|1CE9|A Chain A, Helix Capping In The Gcn4 Leucine Zipper
 pdb|1CE9|B Chain B, Helix Capping In The Gcn4 Leucine Zipper
 pdb|1CE9|C Chain C, Helix Capping In The Gcn4 Leucine Zipper
 pdb|1CE9|D Chain D, Helix Capping In The Gcn4 Leucine Zipper
          Length = 34

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 168 VKEIKDKIDKQLHNNEHLFEGLFGEKEDLKKLV 200
           VKE++DK+++ L  N H    L  E   LKKLV
Sbjct: 3   VKELEDKVEELLSKNYH----LENEVARLKKLV 31



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.323    0.140    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,278,858
Number of Sequences: 13198
Number of extensions: 93567
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 3
length of query: 406
length of database: 2,899,336
effective HSP length: 90
effective length of query: 316
effective length of database: 1,711,516
effective search space: 540839056
effective search space used: 540839056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)