BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645335|ref|NP_207506.1| hypothetical protein
[Helicobacter pylori 26695]
         (124 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EZV|A  Chain A, Structure Of The Yeast Cytochrome Bc1 C...    24  4.4
pdb|1KB9|A  Chain A, Yeast Cytochrome Bc1 Complex                  24  4.4
pdb|1II0|B  Chain B, Crystal Structure Of The Escherichia Co...    24  5.8

>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
           Crystallized With An Antibody Fv-Fragment
 pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
 pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
          Length = 430

 Score = 24.3 bits (51), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 4   KELLEFNDYAMDLTIRMAHHSTAIENNPLSL 34
           K++ +F D      +    HSTA +N PLSL
Sbjct: 119 KQVQDFEDNDHPNRVLEHLHSTAFQNTPLSL 149



>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
          Length = 431

 Score = 24.3 bits (51), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 4   KELLEFNDYAMDLTIRMAHHSTAIENNPLSL 34
           K++ +F D      +    HSTA +N PLSL
Sbjct: 120 KQVQDFEDNDHPNRVLEHLHSTAFQNTPLSL 150



>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase
 pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase
 pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
 pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase
 pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
 pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Mg-Adp-Alf3
          Length = 589

 Score = 23.9 bits (50), Expect = 5.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 6   LLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIPREMPQ 52
           +LE  +   DL     H    I NN LS+A+T S L      +E+PQ
Sbjct: 504 VLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQ 550



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 662,812
Number of Sequences: 13198
Number of extensions: 22666
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 2,899,336
effective HSP length: 77
effective length of query: 47
effective length of database: 1,883,090
effective search space: 88505230
effective search space used: 88505230
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)