BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646199|ref|NP_207507.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(114 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QTN|A Chain A, Crystal Structure Of The Complex Of Cas... 27 0.43
pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase M... 27 0.73
pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From C... 25 1.6
pdb|1QCR|C Chain C, Crystal Structure Of Bovine Mitochondri... 23 6.1
pdb|1AK1| Ferrochelatase From Bacillus Subtilis >gi|75465... 23 6.1
pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase 23 6.1
pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper... 23 6.1
pdb|1BGY|C Chain C, Cytochrome Bc1 Complex From Bovine >gi|... 23 6.1
pdb|1DE5|A Chain A, L-Rhamnose Isomerase >gi|10120982|pdb|1... 23 6.1
pdb|1D8W|D Chain D, L-Rhamnose Isomerase >gi|10835502|pdb|1... 23 8.0
pdb|1MN2| Manganese Peroxidase Substrate Binding Site Mut... 23 8.0
>pdb|1QTN|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The
Tetrapeptide Inhibitor Ace-Ietd-Aldehyde
Length = 164
Score = 27.3 bits (59), Expect = 0.43
Identities = 21/81 (25%), Positives = 39/81 (47%), Gaps = 8/81 (9%)
Query: 21 DKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQN---LIPFVITKEQKEAH- 76
DK ++K+ + L H F+ +V ++ +S+ ++N L +T +E H
Sbjct: 13 DKVYQMKSKPRGYCLIINNHNFAKAREKVPKL---HSIRDRNGTHLDAGALTTTFEELHF 69
Query: 77 -IKALDTCNTESLYQLAKVSQ 96
IK D C E +Y++ K+ Q
Sbjct: 70 EIKPHDDCTVEQIYEILKIYQ 90
>pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1GKL|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
Length = 297
Score = 26.6 bits (57), Expect = 0.73
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 18 TLQDKEEKLKAILEQHILFERIHP-------FSDGNGRVGRMLIFYSVLEQNLIPFVITK 70
T+ + KL+ IL+ I+ + P F+ GN FY QN+IPFV +K
Sbjct: 84 TIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQN---FYQEFRQNVIPFVESK 140
>pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|1GKK|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
Length = 297
Score = 25.4 bits (54), Expect = 1.6
Identities = 19/60 (31%), Positives = 27/60 (44%), Gaps = 10/60 (16%)
Query: 18 TLQDKEEKLKAILEQHILFERIHP-------FSDGNGRVGRMLIFYSVLEQNLIPFVITK 70
T+ + KL+ IL+ I + P F+ GN FY QN+IPFV +K
Sbjct: 84 TIFSNDVKLQNILDHAIXNGELEPLIVVTPTFNGGNCTAQN---FYQEFRQNVIPFVESK 140
>pdb|1QCR|C Chain C, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 378
Score = 23.5 bits (49), Expect = 6.1
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 5/59 (8%)
Query: 50 GRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMI 108
G + + +S+L LIP + T +Q+ + L C +L V+ LT I GQ +
Sbjct: 289 GVLALAFSILILALIPLLHTSKQRSMMFRPLSQCLFWAL-----VADLLTLTWIGGQPV 342
>pdb|1AK1| Ferrochelatase From Bacillus Subtilis
pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
Length = 310
Score = 23.5 bits (49), Expect = 6.1
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 2 PMAIKEWCDNLNYKMKTL-QDKEEKLKAILEQHILFERIHPFSD 44
P + W D + ++ +D+ E I+ H L E+I F D
Sbjct: 151 PKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGD 194
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
Length = 309
Score = 23.5 bits (49), Expect = 6.1
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 2 PMAIKEWCDNLNYKMKTL-QDKEEKLKAILEQHILFERIHPFSD 44
P + W D + ++ +D+ E I+ H L E+I F D
Sbjct: 150 PKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGD 193
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 23.5 bits (49), Expect = 6.1
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 2 PMAIKEWCDNLNYKMKTL-QDKEEKLKAILEQHILFERIHPFSD 44
P + W D + ++ +D+ E I+ H L E+I F D
Sbjct: 147 PKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGD 190
>pdb|1BGY|C Chain C, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|O Chain O, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|C Chain C, Cytochrome Bc1 Complex From Bovine
Length = 379
Score = 23.5 bits (49), Expect = 6.1
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 5/59 (8%)
Query: 50 GRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMI 108
G + + +S+L LIP + T +Q+ + L C +L V+ LT I GQ +
Sbjct: 290 GVLALAFSILILALIPLLHTSKQRSMMFRPLSQCLFWAL-----VADLLTLTWIGGQPV 343
>pdb|1DE5|A Chain A, L-Rhamnose Isomerase
pdb|1DE6|A Chain A, L-Rhamnose Isomerase
pdb|1DE6|B Chain B, L-Rhamnose Isomerase
pdb|1DE6|C Chain C, L-Rhamnose Isomerase
pdb|1DE6|D Chain D, L-Rhamnose Isomerase
pdb|1DE5|B Chain B, L-Rhamnose Isomerase
pdb|1DE5|C Chain C, L-Rhamnose Isomerase
pdb|1DE5|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 23.5 bits (49), Expect = 6.1
Identities = 17/63 (26%), Positives = 33/63 (51%), Gaps = 11/63 (17%)
Query: 19 LQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVI-TKEQKEAHI 77
L D+ + + + + +H LF+R+H +G L F+ + +VI T+ K+A +
Sbjct: 308 LDDETQAIASEIVRHDLFDRVH--------IG--LDFFDASINRIAAWVIGTRNMKKALL 357
Query: 78 KAL 80
+AL
Sbjct: 358 RAL 360
>pdb|1D8W|D Chain D, L-Rhamnose Isomerase
pdb|1D8W|A Chain A, L-Rhamnose Isomerase
pdb|1D8W|B Chain B, L-Rhamnose Isomerase
pdb|1D8W|C Chain C, L-Rhamnose Isomerase
Length = 426
Score = 23.1 bits (48), Expect = 8.0
Identities = 17/63 (26%), Positives = 33/63 (51%), Gaps = 11/63 (17%)
Query: 19 LQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVI-TKEQKEAHI 77
L D+ + + + + +H LF+R+H +G L F+ + +VI T+ K+A +
Sbjct: 308 LDDETQAIASEIVRHDLFDRVH--------IG--LDFFDASINRIAAWVIGTRNXKKALL 357
Query: 78 KAL 80
+AL
Sbjct: 358 RAL 360
>pdb|1MN2| Manganese Peroxidase Substrate Binding Site Mutant E35q, D179n
Length = 357
Score = 23.1 bits (48), Expect = 8.0
Identities = 22/74 (29%), Positives = 27/74 (35%), Gaps = 16/74 (21%)
Query: 20 QDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSV------------LEQNLIPFV 67
QD E ++ I R G G G ML+F +V NLIPF+
Sbjct: 35 QDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFM 94
Query: 68 ITKEQKEAHIKALD 81
QK I A D
Sbjct: 95 ----QKHNTISAAD 104
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,324
Number of Sequences: 13198
Number of extensions: 20794
Number of successful extensions: 59
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 11
length of query: 114
length of database: 2,899,336
effective HSP length: 76
effective length of query: 38
effective length of database: 1,896,288
effective search space: 72058944
effective search space used: 72058944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)