BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645337|ref|NP_207509.1| ABC transporter,
ATP-binding protein [Helicobacter pylori 26695]
(240 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 136 2e-33
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 125 3e-30
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 124 7e-30
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 108 7e-25
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 88 1e-18
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 87 2e-18
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 84 1e-17
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 77 1e-15
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 75 5e-15
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 74 1e-14
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 32 0.065
pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy... 28 1.2
pdb|2REB| The Structure Of The E. Coli Reca Protein Monom... 28 1.2
pdb|1CTM| Cytochrome F (Reduced) >gi|3114361|pdb|2PCF|B C... 27 1.6
pdb|1HCZ| Lumen-Side Domain Of Reduced Cytochrome F At -3... 27 1.6
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 26 3.6
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 26 3.6
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 26 3.6
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 26 3.6
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 26 3.6
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 26 3.6
pdb|1G19|A Chain A, Structure Of Reca Protein >gi|12084113|... 25 6.1
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 25 6.1
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 25 8.0
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 25 8.0
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 25 8.0
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 25 8.0
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 136 bits (343), Expect = 2e-33
Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 2/234 (0%)
Query: 3 ILKAEHLNKQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYL 62
+L+ + L+ + + L+V G++V L+G NGAGKTTT I GL+ G +
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 63 NDVNLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLD 122
N ++ P H + GI +P+ IF EL+V ENL G K+ + + +E +
Sbjct: 66 NGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLX-XGAYNRKDKEGIKRDLEWIFS 124
Query: 123 AF-NIQAIRERKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKIIES 181
F ++ ++ G +LSGGE++ + I RAL PK + DEP G+ PI V ++ ++I+
Sbjct: 125 LFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQK 184
Query: 182 LIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYENALVRKYYLG 235
+ +L+ + N L V H YV+++G ++ G A+E+ +N VRK YLG
Sbjct: 185 INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEXVRKAYLG 238
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 125 bits (315), Expect = 3e-30
Identities = 83/253 (32%), Positives = 128/253 (49%), Gaps = 17/253 (6%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSV 60
M+IL+ E++ K + K + VS+ V G+V ++GPNG+GK+T +I G L+ G V
Sbjct: 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
Query: 61 YLNDVNLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALA----GESTFKN------- 109
Y + ++ + + GI Q KE++V ENL + GES +
Sbjct: 65 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 124
Query: 110 --SKESEEKMESLLDAFNIQAIRERKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGV 167
+E EK +L+ + + +RK LSGG+ + VEI RALM NPK +++DEP AGV
Sbjct: 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 168 DPIAVIDIQKIIESLIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYENA 227
P DI + L I LI +H + L+ YV+ +G ++A G E +N
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 244
Query: 228 L----VRKYYLGE 236
L V + Y+GE
Sbjct: 245 LSDPKVVEIYIGE 257
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 124 bits (312), Expect = 7e-30
Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 17/253 (6%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSV 60
M+IL+ E++ K + K + VS+ V G+V ++GPNG+GK+T +I G L+ G V
Sbjct: 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
Query: 61 YLNDVNLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALA----GESTFKN------- 109
Y + ++ + + GI Q KE++V ENL + GES +
Sbjct: 65 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI 124
Query: 110 --SKESEEKMESLLDAFNIQAIRERKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGV 167
+E EK +L+ + + +RK LSGG+ + VEI RALM NPK +++D+P AGV
Sbjct: 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Query: 168 DPIAVIDIQKIIESLIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYENA 227
P DI + L I LI +H + L+ YV+ +G ++A G E +N
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 244
Query: 228 L----VRKYYLGE 236
L V + Y+GE
Sbjct: 245 LSDPKVVEIYIGE 257
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 108 bits (269), Expect = 7e-25
Identities = 64/211 (30%), Positives = 116/211 (54%), Gaps = 4/211 (1%)
Query: 19 VSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNLA---KYPLHKR 75
V ++SLEVK GE + LLGP+G GKTTT MI GL EPS G +Y+ D +A K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 76 SNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDAFNIQAIRERKGM 135
+ I + Q +++ ++V +N+A + +E ++++ + + + + RK
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 136 SLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKIIESL-IGLNIGVLITDH 194
LSGG+R+RV + RA+++ P+ L+DEP + +D + ++ ++ L L + + H
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 195 NVRETLSVCHRAYVIKSGTLLASGNANEIYE 225
+ E +++ R V+ G L G+ +E+Y+
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 87.8 bits (216), Expect = 1e-18
Identities = 58/188 (30%), Positives = 102/188 (53%), Gaps = 10/188 (5%)
Query: 19 VSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDV---NLAKYPLHKR 75
+ +V+L +K GE V ++GP+G+GK+T +I L +P+ G VY++++ +L L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 76 SNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDAFNIQAIRER--- 132
IG++ Q+ ++ L+ EN+ L ++ + EE+ + L+ + + ER
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 133 -KGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKIIESL---IGLNIG 188
K LSGG+++RV IARAL NP +L D+P +D I ++++ L G +
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 189 VLITDHNV 196
V+ D NV
Sbjct: 201 VVTHDINV 208
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 87.0 bits (214), Expect = 2e-18
Identities = 59/188 (31%), Positives = 100/188 (52%), Gaps = 10/188 (5%)
Query: 19 VSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDV---NLAKYPLHKR 75
+ +V+L +K GE V + GP+G+GK+T +I L +P+ G VY++++ +L L K
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 76 SNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDAFNIQAIRER--- 132
IG++ Q+ ++ L+ EN+ L ++ + EE+ + L+ + ER
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 133 -KGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKIIESL---IGLNIG 188
K LSGG+++RV IARAL NP +L DEP +D I ++++ L G +
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVV 200
Query: 189 VLITDHNV 196
V+ D NV
Sbjct: 201 VVTHDINV 208
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 84.0 bits (206), Expect = 1e-17
Identities = 68/243 (27%), Positives = 115/243 (46%), Gaps = 29/243 (11%)
Query: 11 KQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVY----LNDVN 66
+ + ++ + +S EV++GE++ L+GPNGAGK+T G G + L +
Sbjct: 8 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWS 67
Query: 67 LAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDAFNI 126
K LH+ YL Q+ + V L L + + + E L D
Sbjct: 68 ATKLALHR------AYLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGA 113
Query: 127 QAIRERKGMS---LSGGERRRVEIARALMK-----NP--KFVLLDEPFAGVDPIAVIDIQ 176
A+ ++ G S LSGGE +RV +A +++ NP + +LLDEP +D +
Sbjct: 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALD 173
Query: 177 KIIESLIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYENALVRKYYLGE 236
KI+ +L + ++ + H++ TL HRA+++K G LASG E+ + + Y G
Sbjct: 174 KILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAY-GX 232
Query: 237 NFK 239
NF+
Sbjct: 233 NFR 235
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 77.4 bits (189), Expect = 1e-15
Identities = 57/232 (24%), Positives = 115/232 (49%), Gaps = 14/232 (6%)
Query: 9 LNKQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNL- 67
L+K+ +++ VSL+ ++G+V+ ++G +G+GK+T I L +PS G++ +N N+
Sbjct: 12 LHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71
Query: 68 ------AKYPLHKRSNLGI-----GYLPQESSIFKELSVEENLALAGESTFKNSK-ESEE 115
+ + ++ L + + Q +++ ++V EN+ A SK ++ E
Sbjct: 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE 131
Query: 116 KMESLLDAFNIQAIRERK-GMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVID 174
+ L I + K + LSGG+++RV IARAL P +L DEP + +DP V +
Sbjct: 132 RALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 175 IQKIIESLIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYEN 226
+ +I++ L +++ H + V + G + G+ +++ N
Sbjct: 192 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 75.5 bits (184), Expect = 5e-15
Identities = 53/212 (25%), Positives = 107/212 (50%), Gaps = 10/212 (4%)
Query: 21 DVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNLAKYPLHKRSNLGI 80
+++L++ +G+ V L+G +G+GK+T +I + G + ++ +L +Y L N +
Sbjct: 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ-V 419
Query: 81 GYLPQESSIFKELSVEENLALAGESTFKNSK-ESEEKMESLLDAFN-----IQAIRERKG 134
+ Q +F + +V N+A A + + E +M +D N + + G
Sbjct: 420 ALVSQNVHLFND-TVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 135 MSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKIIESLIGLNIGVLITDH 194
+ LSGG+R+R+ IARAL+++ ++LDE + +D + IQ ++ L N L+ H
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAH 537
Query: 195 NVRETLSVCHRAYVIKSGTLLASGNANEIYEN 226
+ T+ V++ G ++ G N++ E+
Sbjct: 538 RL-STIEKADEIVVVEDGVIVERGTHNDLLEH 568
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 73.9 bits (180), Expect = 1e-14
Identities = 53/217 (24%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 18 IVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNLAKYPLHKRSN 77
++ ++ ++ GEV L+GPNG+GK+T ++ L +P+GG + L+ L +Y H+ +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE-HRYLH 90
Query: 78 LGIGYLPQESSIFKELSVEENLA--LAGESTFKNSKESEEK------MESLLDAFNIQAI 129
+ + QE +F S++EN+A L + T + + K + L ++ +
Sbjct: 91 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV- 148
Query: 130 RERKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKII-ESLIGLNIG 188
+ G LSGG+R+ V +ARAL++ P ++LD+ + +D + + +++++ ES +
Sbjct: 149 -DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 207
Query: 189 VLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYE 225
VL+ ++ H + ++ G + G ++ E
Sbjct: 208 VLLITQHLSLVEQADHILF-LEGGAIREGGTHQQLME 243
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 32.0 bits (71), Expect = 0.065
Identities = 17/46 (36%), Positives = 26/46 (55%)
Query: 17 KIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYL 62
K+ +++E K+ V+ ++G NG GKTTT + E G SV L
Sbjct: 81 KVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 126
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 27.7 bits (60), Expect = 1.2
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 29 GEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNLAKYPLHKRSNLGI 80
G +V + GP +GKTT + + G + D A P++ R LG+
Sbjct: 60 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR-KLGV 110
>pdb|2REB| The Structure Of The E. Coli Reca Protein Monomer And Polymer
pdb|1REA| Structure Of The Reca Protein-Adp Complex
Length = 352
Score = 27.7 bits (60), Expect = 1.2
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 29 GEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNLAKYPLHKRSNLGI 80
G +V + GP +GKTT + + G + D A P++ R LG+
Sbjct: 59 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR-KLGV 109
>pdb|1CTM| Cytochrome F (Reduced)
pdb|2PCF|B Chain B, The Complex Of Cytochrome F And Plastocyanin Determined
With Paramagnetic Nmr. Based On The Structures Of
Cytochrome F And Plastocyanin, 10 Structures
Length = 250
Score = 27.3 bits (59), Expect = 1.6
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 64 DVNLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDA 123
DV+ KYP++ N G G + + S K + N G + KE +++DA
Sbjct: 140 DVHFLKYPIYVGGNRGRGQIYPDGS--KSNNTVYNATAGGIISKILRKEKGGYEITIVDA 197
Query: 124 FNIQAIRE--RKGMSLSGGERRRVEIARALMKNP 155
N + + + +G+ L E +++ + L NP
Sbjct: 198 SNERQVIDIIPRGLELLVSEGESIKLDQPLTSNP 231
>pdb|1HCZ| Lumen-Side Domain Of Reduced Cytochrome F At -35 Degrees Celsius
Length = 252
Score = 27.3 bits (59), Expect = 1.6
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 64 DVNLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDA 123
DV+ KYP++ N G G + + S K + N G + KE +++DA
Sbjct: 140 DVHFLKYPIYVGGNRGRGQIYPDGS--KSNNTVYNATAGGIISKILRKEKGGYEITIVDA 197
Query: 124 FNIQAIRE--RKGMSLSGGERRRVEIARALMKNP 155
N + + + +G+ L E +++ + L NP
Sbjct: 198 SNERQVIDIIPRGLELLVSEGESIKLDQPLTSNP 231
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 26.2 bits (56), Expect = 3.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVG-------LLGPNGAGKTTTFYMICGLL 53
+ L+ + L++ I + + +SL +++ ++ G L GP G GKTT ++I L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
Query: 54 E 54
+
Sbjct: 76 Q 76
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 26.2 bits (56), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 65 VNLAKYPLHKRSNLGIGYLPQESSIFKE 92
VNL +Y + R N GI LP+E + K+
Sbjct: 364 VNLTRYVKYIRGNAGIYKLPREDNSLKQ 391
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 26.2 bits (56), Expect = 3.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVG-------LLGPNGAGKTTTFYMICGLL 53
+ L+ + L++ I + + +SL +++ ++ G L GP G GKTT ++I L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
Query: 54 E 54
+
Sbjct: 76 Q 76
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 26.2 bits (56), Expect = 3.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVG-------LLGPNGAGKTTTFYMICGLL 53
+ L+ + L++ I + + +SL +++ ++ G L GP G GKTT ++I L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
Query: 54 E 54
+
Sbjct: 76 Q 76
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 26.2 bits (56), Expect = 3.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVG-------LLGPNGAGKTTTFYMICGLL 53
+ L+ + L++ I + + +SL +++ ++ G L GP G GKTT ++I L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
Query: 54 E 54
+
Sbjct: 76 Q 76
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 26.2 bits (56), Expect = 3.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVG-------LLGPNGAGKTTTFYMICGLL 53
+ L+ + L++ I + + +SL +++ ++ G L GP G GKTT ++I L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
Query: 54 E 54
+
Sbjct: 76 Q 76
>pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 17/57 (29%), Positives = 24/57 (41%), Gaps = 3/57 (5%)
Query: 18 IVSDVSLEVKS---GEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNLAKYP 71
I DV+L + G V+ + GP +GKTT + +GG D A P
Sbjct: 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP 102
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 25.4 bits (54), Expect = 6.1
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 26/100 (26%)
Query: 34 LLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVNLAKY----PLHKRSNLGIGYL------ 83
L+GP GAGK+T G +N+ Y + KR+ +G++
Sbjct: 9 LVGPMGAGKSTI------------GRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGE 56
Query: 84 ----PQESSIFKELSVEENLALAGESTFKNSKESEEKMES 119
+E + EL+ ++ + LA S+E+ ++ +
Sbjct: 57 EGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSA 96
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 25.0 bits (53), Expect = 8.0
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 4/39 (10%)
Query: 153 KNPKFVLLDEPFAGVDPIAVIDIQKIIESLIGLNIGVLI 191
+ P VLLD G+D I ++ K+I+ NI V+I
Sbjct: 46 ERPDLVLLDMKIPGMDGIEILKRMKVIDE----NIRVII 80
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 25.0 bits (53), Expect = 8.0
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 4/39 (10%)
Query: 153 KNPKFVLLDEPFAGVDPIAVIDIQKIIESLIGLNIGVLI 191
+ P VLLD G+D I ++ K+I+ NI V+I
Sbjct: 44 ERPDLVLLDMKIPGMDGIEILKRMKVIDE----NIRVII 78
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 25.0 bits (53), Expect = 8.0
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 4/39 (10%)
Query: 153 KNPKFVLLDEPFAGVDPIAVIDIQKIIESLIGLNIGVLI 191
+ P VLLD G+D I ++ K+I+ NI V+I
Sbjct: 46 ERPDLVLLDMKIPGMDGIEILKRMKVIDE----NIRVII 80
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 25.0 bits (53), Expect = 8.0
Identities = 15/61 (24%), Positives = 32/61 (51%), Gaps = 7/61 (11%)
Query: 1 MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVG-------LLGPNGAGKTTTFYMICGLL 53
+ L+ + L++ I + + +SL +++ ++ G L GP G G+TT ++I L
Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASEL 75
Query: 54 E 54
+
Sbjct: 76 Q 76
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.136 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,310,771
Number of Sequences: 13198
Number of extensions: 53673
Number of successful extensions: 230
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 27
length of query: 240
length of database: 2,899,336
effective HSP length: 86
effective length of query: 154
effective length of database: 1,764,308
effective search space: 271703432
effective search space used: 271703432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)