BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645338|ref|NP_207510.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(133 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HTW|A Chain A, Complex Of Hi0065 With Adp And Magnesiu... 49 3e-07
pdb|1FL9|A Chain A, The Yjee Protein >gi|22218635|pdb|1FL9|... 49 3e-07
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 27 0.79
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 27 0.79
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 27 0.79
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 27 1.0
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 27 1.0
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 27 1.0
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 27 1.0
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 27 1.0
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 25 2.3
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 25 3.0
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 25 3.0
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 25 3.9
pdb|1ES7|D Chain D, Complex Between Bmp-2 And Two Bmp Recep... 24 5.1
pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like ... 24 5.1
pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding D... 24 6.7
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 24 6.7
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 23 8.8
>pdb|1HTW|A Chain A, Complex Of Hi0065 With Adp And Magnesium
pdb|1HTW|B Chain B, Complex Of Hi0065 With Adp And Magnesium
pdb|1HTW|C Chain C, Complex Of Hi0065 With Adp And Magnesium
Length = 158
Score = 48.5 bits (114), Expect = 3e-07
Identities = 29/98 (29%), Positives = 54/98 (54%), Gaps = 5/98 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYS---ESVFHYDFY-MHDLKA 78
+V L G +G+GKTTL + L+ +G SPT++L+ Y+ + ++H+D Y + D +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 94
Query: 79 CLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
+G+ + I +EW EK + IL + D+ + +
Sbjct: 95 LEFMGIRDYFNTDSICLIEW-SEKGQGILPEADILVNI 131
>pdb|1FL9|A Chain A, The Yjee Protein
pdb|1FL9|B Chain B, The Yjee Protein
pdb|1FL9|C Chain C, The Yjee Protein
Length = 161
Score = 48.5 bits (114), Expect = 3e-07
Identities = 29/98 (29%), Positives = 54/98 (54%), Gaps = 5/98 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYS---ESVFHYDFY-MHDLKA 78
+V L G +G+GKTTL + L+ +G SPT++L+ Y+ + ++H+D Y + D +
Sbjct: 38 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 97
Query: 79 CLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
+G+ + I +EW EK + IL + D+ + +
Sbjct: 98 LEFMGIRDYFNTDSICLIEW-SEKGQGILPEADILVNI 134
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 26.9 bits (58), Expect = 0.79
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
+LL G G GKTTL LG++++ TS
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 26.9 bits (58), Expect = 0.79
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
+LL G G GKTTL LG++++ TS
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 26.9 bits (58), Expect = 0.79
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
+LL G G GKTTL LG++++ TS
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 26.6 bits (57), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 13 AAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
AA ++ + VLL G G GKTTL L +I TS
Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 26.6 bits (57), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 13 AAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
AA ++ + VLL G G GKTTL L +I TS
Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 26.6 bits (57), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 13 AAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
AA ++ + VLL G G GKTTL L +I TS
Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 26.6 bits (57), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 13 AAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
AA ++ + VLL G G GKTTL L +I TS
Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 26.6 bits (57), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 13 AAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
AA ++ + VLL G G GKTTL L +I TS
Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 83
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 25.4 bits (54), Expect = 2.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 13 AAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATS 53
AA ++ + VLL G G G+TTL L +I TS
Sbjct: 43 AAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIHVTS 83
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 25.0 bits (53), Expect = 3.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 8 LDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLD 48
LD V+ ++ K D V L+ G GSGK+TL+ L D
Sbjct: 23 LDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 25.0 bits (53), Expect = 3.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 8 LDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLD 48
LD V+ ++ K D V L+ G GSGK+TL+ L D
Sbjct: 23 LDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 24.6 bits (52), Expect = 3.9
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 15 ILKDDFKGVVLLKGVVGSGKTT 36
++ D V++L GV G+GKTT
Sbjct: 92 VIPDKIPYVIMLVGVQGTGKTT 113
>pdb|1ES7|D Chain D, Complex Between Bmp-2 And Two Bmp Receptor Ia
Ectodomains
pdb|1ES7|B Chain B, Complex Between Bmp-2 And Two Bmp Receptor Ia
Ectodomains
Length = 89
Score = 24.3 bits (51), Expect = 5.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 33 GKTTLVQACLKHLGLDIQ 50
G+TTL C+K+ G D Q
Sbjct: 38 GETTLASGCMKYEGSDFQ 55
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 24.3 bits (51), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (61%), Gaps = 2/29 (6%)
Query: 93 IHFVEWGDEKLEKILKKYDLAIKVVEVKT 121
I F+EWG E+ I+ + A++ +E KT
Sbjct: 282 IRFIEWGGER--AIIAHLEKAVEALEGKT 308
>pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding Domain From The Dead
Ringer Protein
Length = 128
Score = 23.9 bits (50), Expect = 6.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESVFHYDFYMHDLKACLEL 82
V+ G+V L Q +K L L TS F+L Y + ++ Y+ +L EL
Sbjct: 61 VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAEL 120
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 23.9 bits (50), Expect = 6.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 5 LDELDKVAAAILKDDFK--GVVLLKGVVGSGKTTLVQACLKHLGLDI 49
L E K+A A L + K G L G G GKT + K LG+++
Sbjct: 470 LTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL 516
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 23.5 bits (49), Expect = 8.8
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 25 LLKGVVGSGKTTLVQACL 42
LL+G VGSGKT + Q +
Sbjct: 393 LLQGDVGSGKTVVAQLAI 410
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 741,163
Number of Sequences: 13198
Number of extensions: 28184
Number of successful extensions: 80
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 19
length of query: 133
length of database: 2,899,336
effective HSP length: 78
effective length of query: 55
effective length of database: 1,869,892
effective search space: 102844060
effective search space used: 102844060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)