BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645339|ref|NP_207511.1| DNA polymerase III gamma
and tau subunits (dnaX) [Helicobacter pylori 26695]
(578 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JR3|A Chain A, Crystal Structure Of The Processivity C... 235 1e-62
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 93 7e-20
pdb|1JR3|E Chain E, Crystal Structure Of The Processivity C... 71 3e-13
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 39 0.002
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 39 0.002
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 39 0.002
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 39 0.002
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 39 0.002
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 38 0.004
pdb|1KFL|A Chain A, Crystal Structure Of Phenylalanine-Regu... 30 0.74
pdb|1QR7|D Chain D, Crystal Structure Of Phenylalanine-Regu... 30 0.74
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 29 1.6
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 29 1.6
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 29 1.6
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 28 2.1
pdb|1OSP|O Chain O, Crystal Structure Of Outer Surface Prot... 28 3.7
pdb|1QCI|A Chain A, Low Temperature Structure Of Pokeweed A... 27 6.3
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 27 8.2
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
Length = 373
Score = 235 bits (599), Expect = 1e-62
Identities = 122/283 (43%), Positives = 176/283 (62%), Gaps = 2/283 (0%)
Query: 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALM 61
QVLA K+RP+ F+++VGQE V L+ L R+ +AYLFSG RG GKTS +R+ A+ L
Sbjct: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63
Query: 62 CEEGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF 121
CE G A PC C C+ +D+IE+D AS ++D R+L++ +Y P+ GR+K++
Sbjct: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123
Query: 122 IIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSV 181
+IDEVHM + +FNALLKTLEEPP HVKFLLATTD KLP TILSR F K + +
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 182 ISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
L+ IL +E +++E AL+ LA + +GSLRD ++L +QAI D ++ V+ MLG
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243
Query: 242 IDRSVLEDFFQSLINQDEARLKE--RYAILENYETESVLEEMM 282
+D ++++ + R+ A E E++L EM+
Sbjct: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEML 286
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 93.2 bits (230), Expect = 7e-20
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 23/231 (9%)
Query: 7 KYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGP 66
KYRP+ ++VGQE + K L + + + LF+G G GKT+++ AR L E
Sbjct: 18 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHL-LFAGPPGVGKTTAALALARELFGE--- 73
Query: 67 KAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQ-TRYKPSFGR-YKIFIID 124
N + +E++ + RGI+ +R +++ R KP G +KI +D
Sbjct: 74 ----------------NWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLD 117
Query: 125 EVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVISH 184
E T +A AL +T+E S+V+F+L+ + K+ I SR FRF+ + + +
Sbjct: 118 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKR 177
Query: 185 LKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKV 235
L+ I E E + L+ + + +G +R I +L QA D IT+ V
Sbjct: 178 LRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDKKITDENV 227
>pdb|1JR3|E Chain E, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1A5T| Crystal Structure Of The Delta Prime Subunit Of The Clamp-Loader
Complex Of Escherichia Coli Dna Polymerase Iii
Length = 334
Score = 71.2 bits (173), Expect = 3e-13
Identities = 47/152 (30%), Positives = 69/152 (44%), Gaps = 3/152 (1%)
Query: 37 NAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCIQCQSALNNHHIDIIEM---DG 93
+A L L G G + +R L+C++ C C CQ H D + G
Sbjct: 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84
Query: 94 ASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLA 153
+ G+D VR + E+ G K+ + + + T A NALLKTLEEPP+ F LA
Sbjct: 85 KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144
Query: 154 TTDALKLPATILSRTQHFRFKKIPENSVISHL 185
T + +L AT+ SR + PE ++ L
Sbjct: 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWL 176
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 9 RPKHFSELVGQESVAKTLSLALDNQRL----ANAYLFSGLRGSGKTSSSRIFARAL 60
RPK E +GQE+V K LSLAL+ ++ + L +G G GKT+ + I A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 9 RPKHFSELVGQESVAKTLSLALDNQRL----ANAYLFSGLRGSGKTSSSRIFARAL 60
RPK E +GQE+V K LSLAL+ ++ + L +G G GKT+ + I A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 9 RPKHFSELVGQESVAKTLSLALDNQRL----ANAYLFSGLRGSGKTSSSRIFARAL 60
RPK E +GQE+V K LSLAL+ ++ + L +G G GKT+ + I A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 9 RPKHFSELVGQESVAKTLSLALDNQRL----ANAYLFSGLRGSGKTSSSRIFARAL 60
RPK E +GQE+V K LSLAL+ ++ + L +G G GKT+ + I A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 9 RPKHFSELVGQESVAKTLSLALDNQRL----ANAYLFSGLRGSGKTSSSRIFARAL 60
RPK E +GQE+V K LSLAL+ ++ + L +G G GKT+ + I A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.004
Identities = 22/56 (39%), Positives = 32/56 (56%), Gaps = 4/56 (7%)
Query: 9 RPKHFSELVGQESVAKTLSLALDNQRL----ANAYLFSGLRGSGKTSSSRIFARAL 60
RPK E +GQE+V K LSLAL+ ++ + L +G G G+T+ + I A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASEL 75
>pdb|1KFL|A Chain A, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|B Chain B, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|C Chain C, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|D Chain D, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|E Chain E, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|F Chain F, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|G Chain G, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
pdb|1KFL|H Chain H, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase (Dahp
Synthase) From E.Coli Complexed With Mn2+, Pep, And Phe
Length = 350
Score = 30.0 bits (66), Expect = 0.74
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 491 NHSENKSTLEVVKELKFPYS--KPKPTTETTAETKEKETK--EKEIQENDTKEIQEVQPK 546
N+ + ++ +KEL P + + P TE A T K K ++ ND + + + P
Sbjct: 2 NYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIHKILKGNDDRLLVVIGPC 61
Query: 547 QA--PTALQEFMANHSELIEEIKSEFEI 572
P A +E+ L EE+K E EI
Sbjct: 62 SIHDPVAAKEYATRLLALREELKDELEI 89
>pdb|1QR7|D Chain D, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1GG1|B Chain B, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1QR7|A Chain A, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|B Chain B, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|C Chain C, Crystal Structure Of Phenylalanine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1GG1|D Chain D, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|A Chain A, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|C Chain C, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
Length = 350
Score = 30.0 bits (66), Expect = 0.74
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 491 NHSENKSTLEVVKELKFPYS--KPKPTTETTAETKEKETK--EKEIQENDTKEIQEVQPK 546
N+ + ++ +KEL P + + P TE A T K K ++ ND + + + P
Sbjct: 2 NYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIHKILKGNDDRLLVVIGPC 61
Query: 547 QA--PTALQEFMANHSELIEEIKSEFEI 572
P A +E+ L EE+K E EI
Sbjct: 62 SIHDPVAAKEYATRLLALREELKDELEI 89
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.9 bits (63), Expect = 1.6
Identities = 23/65 (35%), Positives = 34/65 (51%), Gaps = 8/65 (12%)
Query: 1 MQVLALKYRPKHFSELVGQESVAKTLSLALD-----NQRLANAYLFSGLRGSGKTSSSRI 55
M+ LAL RPK E +GQE + + L + L+ + L + LF G G GKT+ + +
Sbjct: 1 MEDLAL--RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHV 57
Query: 56 FARAL 60
A L
Sbjct: 58 IAHEL 62
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.9 bits (63), Expect = 1.6
Identities = 23/65 (35%), Positives = 34/65 (51%), Gaps = 8/65 (12%)
Query: 1 MQVLALKYRPKHFSELVGQESVAKTLSLALD-----NQRLANAYLFSGLRGSGKTSSSRI 55
M+ LAL RPK E +GQE + + L + L+ + L + LF G G GKT+ + +
Sbjct: 1 MEDLAL--RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHV 57
Query: 56 FARAL 60
A L
Sbjct: 58 IAHEL 62
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.9 bits (63), Expect = 1.6
Identities = 23/65 (35%), Positives = 34/65 (51%), Gaps = 8/65 (12%)
Query: 1 MQVLALKYRPKHFSELVGQESVAKTLSLALD-----NQRLANAYLFSGLRGSGKTSSSRI 55
M+ LAL RPK E +GQE + + L + L+ + L + LF G G GKT+ + +
Sbjct: 1 MEDLAL--RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHV 57
Query: 56 FARAL 60
A L
Sbjct: 58 IAHEL 62
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 28.5 bits (62), Expect = 2.1
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 392 EKKENAETPQTPMLSAKD----RIFHNLFKQVQTLVYERNY---ELGAVFEKNIRFIDFD 444
++K++++TP T ++ K + F +++ E +G +F KN ID +
Sbjct: 624 QRKDDSKTPYTTYVNGKTIDLKQASSQQFTDTKSVFLESKEPGRNIGYIFFKNST-IDIE 682
Query: 445 SQTKTLTWESL-ATDKDKELLRERFKIVKSIVDGVFGKGESIKIALKNHSENKSTLEVVK 503
+ +T TW S+ T K+ ++ F + D KG+S +
Sbjct: 683 RKEQTGTWNSINRTSKNTSIVSNPFITISQKHDN---KGDSYGYMMV------------- 726
Query: 504 ELKFPYSKPKPTTETTAETKEKETKEKEIQENDTKEIQEVQPKQAPT 550
P + T+ K +KE E+ EN +K+ Q + K + T
Sbjct: 727 ----------PNIDRTSFDKLANSKEVELLENSSKQ-QVIYDKNSQT 762
>pdb|1OSP|O Chain O, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
pdb|1FJ1|E Chain E, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|F Chain F, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 257
Score = 27.7 bits (60), Expect = 3.7
Identities = 27/111 (24%), Positives = 48/111 (42%), Gaps = 13/111 (11%)
Query: 435 EKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIV----------KSIVDGVFGKGES 484
EKN +D + K L + D +L+ K+ +++GV K +
Sbjct: 10 EKNSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGV--KADK 67
Query: 485 IKIALKNHSE-NKSTLEVVKELKFPYSKPKPTTETTAETKEKETKEKEIQE 534
K+ L + ++TLEV KE K T++ + T+EK ++ E+ E
Sbjct: 68 CKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSE 118
>pdb|1QCI|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1QCI|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1D6A|A Chain A, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
pdb|1D6A|B Chain B, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
pdb|1QCJ|A Chain A, Low Temperature Complex Of Pokeweed Antiviral Protein With
Pteoric Acid
pdb|1QCJ|B Chain B, Low Temperature Complex Of Pokeweed Antiviral Protein With
Pteoric Acid
pdb|1QCG|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1QCG|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1PAF|A Chain A, Pokeweed Antiviral Protein
pdb|1PAF|B Chain B, Pokeweed Antiviral Protein
pdb|1PAG|A Chain A, Pokeweed Antiviral Protein Complex With Formycin
5'-Monophosphate
pdb|1PAG|B Chain B, Pokeweed Antiviral Protein Complex With Formycin
5'-Monophosphate
Length = 262
Score = 26.9 bits (58), Expect = 6.3
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 21/159 (13%)
Query: 209 QGSLRDTITLLEQAIN-----YCDNAITESKVAEMLGAIDRSVLEDFFQSLINQDEARLK 263
QGS + TITL+ + N Y D T + I + +D +L +R+
Sbjct: 55 QGSNKKTITLMLRRNNLYVMGYSDPFETNKCRYHIFNDISGTERQDVETTLCPNANSRVS 114
Query: 264 ERYAILENYET----ESVLEEMMLFLKAKLLSPDFYSILLIERFFKIIMSSLSLLKEGAN 319
+ Y T V + L ++L + I S + E
Sbjct: 115 KNINFDSRYPTLESKAGVKSRSQVQLGIQILDSNIGKI-----------SGVMSFTEKTE 163
Query: 320 ASFVLLLLKMKFKEALKFKALDDAILELEQTPFNQNPSI 358
A F+L+ ++M EA +FK +++ + FN NP +
Sbjct: 164 AEFLLVAIQM-VSEAARFKYIENQVKTNFNRAFNPNPKV 201
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 26.6 bits (57), Expect = 8.2
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 338 KALDDAILELEQTPFNQNPSISYNAPKQESKNIE-------KREKIEQIERIEGTEKREK 390
+++ DAIL+ +QT + I K ES +R+ + +E+ E + +
Sbjct: 469 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL 528
Query: 391 LEKKENAETPQTPMLSAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTK 448
+ E E + +L ++R ++ + L+ E + + + I+ D QTK
Sbjct: 529 KQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ----DLQTK 582
Score = 26.6 bits (57), Expect = 8.2
Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 346 ELEQTPFNQNPSISYNAPKQESKNIEKREKIEQIERIEGTEKREKLEKKENAETPQTPML 405
E+ QT S++ +A Q + + ++EK ++ER++ + + + M+
Sbjct: 459 EILQTYLKSKESMT-DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 517
Query: 406 SAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWESLATDKDKELLR 465
K+R + KQ+ + +N R Q +TL +L + ++LL+
Sbjct: 518 EQKERSYQEHLKQLTEKM------------ENDRVQLLKEQERTL---ALKLQEQEQLLK 562
Query: 466 ERFK 469
E F+
Sbjct: 563 EGFQ 566
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,915,549
Number of Sequences: 13198
Number of extensions: 113167
Number of successful extensions: 322
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 19
length of query: 578
length of database: 2,899,336
effective HSP length: 93
effective length of query: 485
effective length of database: 1,671,922
effective search space: 810882170
effective search space used: 810882170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)