BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644703|ref|NP_206873.1| urease alpha subunit (ureA)
(urea amidohydrolase) [Helicobacter pylori 26695]
(238 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E9Y|A Chain A, Crystal Structure Of Helicobacter Pylor... 471 e-134
pdb|4UBP|B Chain B, Structure Of Bacillus Pasteurii Urease ... 131 6e-32
pdb|1UBP|B Chain B, Crystal Structure Of Urease From Bacill... 130 2e-31
pdb|1FWA|A Chain A, Klebsiella Aerogenes Urease, C319a Vari... 110 1e-25
pdb|4UBP|A Chain A, Structure Of Bacillus Pasteurii Urease ... 109 2e-25
pdb|1FWA|B Chain B, Klebsiella Aerogenes Urease, C319a Vari... 108 7e-25
pdb|1EJR|B Chain B, Crystal Structure Of The D221a Variant ... 108 7e-25
pdb|1IE7|A Chain A, Phosphate Inhibited Bacillus Pasteurii ... 108 7e-25
pdb|1JG7|A Chain A, T4 Phage Bgt In Complex With Udp And Mn... 31 0.15
pdb|1AUI|A Chain A, Human Calcineurin Heterodimer 28 0.72
pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin ... 28 0.72
pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclop... 28 0.72
pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Frag... 28 0.94
pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphogluco... 28 1.2
pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Mo... 28 1.2
pdb|1A6D|B Chain B, Thermosome From T. Acidophilum >gi|4699... 27 1.6
pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthe... 26 3.6
pdb|1LNR|P Chain P, Crystal Structure Of The Large Ribosoma... 26 4.7
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexe... 25 6.1
pdb|1MAB|A Chain A, Rat Liver F1-Atpase 25 6.1
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd (Dic... 25 6.1
pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alph... 25 8.0
pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb P... 25 8.0
pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Com... 25 8.0
pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crysta... 25 8.0
pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase... 25 8.0
pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alph... 25 8.0
pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant... 25 8.0
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Comp... 25 8.0
>pdb|1E9Y|A Chain A, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
pdb|1E9Z|A Chain A, Crystal Structure Of Helicobacter Pylori Urease
Length = 238
Score = 471 bits (1211), Expect = e-134
Identities = 237/238 (99%), Positives = 238/238 (99%)
Query: 1 MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQE 60
MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQE
Sbjct: 1 MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQE 60
Query: 61 GRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPIEANGKLVPGELFLKNEDITI 120
GRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPIEANGKLVPGELFLKNEDITI
Sbjct: 61 GRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPIEANGKLVPGELFLKNEDITI 120
Query: 121 NEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIASGTAVRFEPGE 180
NEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIA+GTAVRFEPGE
Sbjct: 121 NEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIAAGTAVRFEPGE 180
Query: 181 EKSVELIDIGGNRRIFGFNALVDRQADNESKKIALHRAKERGFHGAKSDDNYVKTIKE 238
EKSVELIDIGGNRRIFGFNALVDRQADNESKKIALHRAKERGFHGAKSDDNYVKTIKE
Sbjct: 181 EKSVELIDIGGNRRIFGFNALVDRQADNESKKIALHRAKERGFHGAKSDDNYVKTIKE 238
>pdb|4UBP|B Chain B, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1IE7|B Chain B, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|3UBP|B Chain B, Diamidophosphate Inhibited Bacillus Pasteurii Urease
Length = 126
Score = 131 bits (330), Expect = 6e-32
Identities = 63/125 (50%), Positives = 86/125 (68%), Gaps = 2/125 (1%)
Query: 103 NGKLVPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTF 162
N +VPGE + +I IN G++ +++V N GDRP+Q+GSH HF EVN+ L FDR +
Sbjct: 4 NNYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGI 63
Query: 163 GKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDRQADNESKKIALHRAKERG 222
G+RL+I SGTA RFEPGEE VEL ++GGNR +FG + L + DN K++ L RAKE G
Sbjct: 64 GRRLNIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDN--KELILQRAKELG 121
Query: 223 FHGAK 227
+ G +
Sbjct: 122 YKGVE 126
>pdb|1UBP|B Chain B, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|B Chain B, Structure Of Native Urease From Bacillus Pasteurii
Length = 122
Score = 130 bits (326), Expect = 2e-31
Identities = 62/122 (50%), Positives = 85/122 (68%), Gaps = 2/122 (1%)
Query: 106 LVPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKR 165
+VPGE + +I IN G++ +++V N GDRP+Q+GSH HF EVN+ L FDR + G+R
Sbjct: 3 IVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRR 62
Query: 166 LDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDRQADNESKKIALHRAKERGFHG 225
L+I SGTA RFEPGEE VEL ++GGNR +FG + L + DN K++ L RAKE G+ G
Sbjct: 63 LNIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDN--KELILQRAKELGYKG 120
Query: 226 AK 227
+
Sbjct: 121 VE 122
>pdb|1FWA|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWE|A Chain A, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
pdb|2KAU|A Chain A, Molecule: Klebsiella Aerogenes Urease; Ec: 3.5.1.5;
Synonyms: Urea Amidohydrolase, Urease; Engineered
pdb|1EJR|A Chain A, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
pdb|1EJS|A Chain A, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
pdb|1EJT|A Chain A, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
pdb|1EJU|A Chain A, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
pdb|1FWB|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|A Chain A, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWF|A Chain A, Klebsiella Aerogenes Urease, C319d Variant
pdb|1FWG|A Chain A, Klebsiella Aerogenes Urease, C319s Variant
pdb|1FWH|A Chain A, Klebsiella Aerogenes Urease, C319y Variant
pdb|1FWI|A Chain A, Klebsiella Aerogenes Urease, H134a Variant
pdb|1A5M|A Chain A, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1FWJ|A Chain A, Klebsiella Aerogenes Urease, Native
pdb|1A5K|A Chain A, K217e Variant Of Klebsiella Aerogenes Urease
pdb|1A5L|A Chain A, K217c Variant Of Klebsiella Aerogenes Urease
pdb|1KRA|A Chain A, Apoenzyme, Nickel Metalloenzyme Mol_id: 1; Molecule:
Urease; Chain: A, B, C; Ec: 3.5.1.5
pdb|1A5N|A Chain A, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1EJV|A Chain A, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
pdb|1A5O|A Chain A, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1KRB|A Chain A, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
H(C 219)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
pdb|1KRC|A Chain A, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
H(C 320)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
pdb|1EF2|C Chain C, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
Length = 100
Score = 110 bits (275), Expect = 1e-25
Identities = 58/100 (58%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 1 MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQE 60
M+LTP+E DKL+L A +A++R +G+KLNY E+VALISA IME AR G K+ A LM+E
Sbjct: 1 MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDG-KSVASLMEE 59
Query: 61 GRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPI 100
GR +L + VM+GV MI ++ +EA FPDG+KLVTVH PI
Sbjct: 60 GRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPI 99
>pdb|4UBP|A Chain A, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1UBP|A Chain A, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|A Chain A, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|A Chain A, Diamidophosphate Inhibited Bacillus Pasteurii Urease
Length = 101
Score = 109 bits (273), Expect = 2e-25
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 1 MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQE 60
M L P E +KL + A EL +RK +G+KLNY EAVA+I++ IME AR GK T A LM+E
Sbjct: 2 MHLNPAEKEKLQIFLASELLLRRKARGLKLNYPEAVAIITSFIMEGARDGK-TVAMLMEE 60
Query: 61 GRTLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPI 100
G+ +L DDVM+GV MI ++ EA FPDGTKLVTVH PI
Sbjct: 61 GKHVLTRDDVMEGVPEMIDDIQAEATFPDGTKLVTVHNPI 100
>pdb|1FWA|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWE|B Chain B, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
pdb|2KAU|B Chain B, Molecule: Klebsiella Aerogenes Urease; Ec: 3.5.1.5;
Synonyms: Urea Amidohydrolase, Urease; Engineered
pdb|1FWB|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|B Chain B, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWF|B Chain B, Klebsiella Aerogenes Urease, C319d Variant
pdb|1FWG|B Chain B, Klebsiella Aerogenes Urease, C319s Variant
pdb|1FWH|B Chain B, Klebsiella Aerogenes Urease, C319y Variant
pdb|1FWI|B Chain B, Klebsiella Aerogenes Urease, H134a Variant
pdb|1FWJ|B Chain B, Klebsiella Aerogenes Urease, Native
pdb|1KRA|B Chain B, Apoenzyme, Nickel Metalloenzyme Mol_id: 1; Molecule:
Urease; Chain: A, B, C; Ec: 3.5.1.5
pdb|1KRB|B Chain B, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
H(C 219)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
pdb|1KRC|B Chain B, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
H(C 320)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
Length = 106
Score = 108 bits (269), Expect = 7e-25
Identities = 49/97 (50%), Positives = 68/97 (69%)
Query: 106 LVPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKR 165
++PGE +K I +N G+ V V+N GDRP+Q+GSH+HF EVN L FDR++ G R
Sbjct: 1 MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYR 60
Query: 166 LDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALV 202
L+I +GTAVRFEPG+++ VEL+ G+R +FGF V
Sbjct: 61 LNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEV 97
>pdb|1EJR|B Chain B, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
pdb|1EJS|B Chain B, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
pdb|1EJT|B Chain B, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
pdb|1EJU|B Chain B, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
pdb|1A5M|B Chain B, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5K|B Chain B, K217e Variant Of Klebsiella Aerogenes Urease
pdb|1A5L|B Chain B, K217c Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|B Chain B, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1EJV|B Chain B, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
pdb|1A5O|B Chain B, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1EF2|B Chain B, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
Length = 101
Score = 108 bits (269), Expect = 7e-25
Identities = 49/97 (50%), Positives = 68/97 (69%)
Query: 106 LVPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKR 165
++PGE +K I +N G+ V V+N GDRP+Q+GSH+HF EVN L FDR++ G R
Sbjct: 1 MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYR 60
Query: 166 LDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALV 202
L+I +GTAVRFEPG+++ VEL+ G+R +FGF V
Sbjct: 61 LNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEV 97
>pdb|1IE7|A Chain A, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 100
Score = 108 bits (269), Expect = 7e-25
Identities = 57/98 (58%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 3 LTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGR 62
L P E +KL + A EL +RK +G+KLNY EAVA+I++ IME AR GK T A LM+EG+
Sbjct: 3 LNPAEKEKLQIFLASELLLRRKARGLKLNYPEAVAIITSFIMEGARDGK-TVAMLMEEGK 61
Query: 63 TLLKPDDVMDGVASMIHEVGIEAMFPDGTKLVTVHTPI 100
+L DDVM+GV MI ++ EA FPDGTKLVTVH PI
Sbjct: 62 HVLTRDDVMEGVPEMIDDIQAEATFPDGTKLVTVHNPI 99
>pdb|1JG7|A Chain A, T4 Phage Bgt In Complex With Udp And Mn2+
pdb|1JIX|A Chain A, T4 Phage Bgt In Complex With Ca2+
pdb|1JG6|A Chain A, T4 Phage Bgt In Complex With Udp
pdb|1JIV|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form Ii
pdb|1QKJ|A Chain A, T4 Phage B-Glucosyltransferase, Substrate Binding And
Proposed Catalytic Mechanism
pdb|1JIU|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form I
pdb|1JEJ|A Chain A, T4 Phage Apo Bgt
pdb|1C3J|A Chain A, T4 Phage Beta-Glucosyltransferase: Substrate Binding And
Proposed Catalytic Mechanism
pdb|2BGT| Mol_id: 1; Molecule: Beta-Glucosyltransferase; Chain: Null; Ec:
2.4.1.27
pdb|2BGU| Mol_id: 1; Molecule: Beta-Glucosyltransferase; Chain: Null; Ec:
2.4.1.27
pdb|1BGT| Beta-Glucosyltransferase (E.C.2.4.1.27) (Alpha-Carbons)
pdb|1BGU| Beta-Glucosyltransferase (E.C.2.4.1.27) (Alpha-Carbons)
Length = 351
Score = 30.8 bits (68), Expect = 0.15
Identities = 26/93 (27%), Positives = 40/93 (42%), Gaps = 8/93 (8%)
Query: 110 ELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCL----DFDREKTFGKR 165
EL +K+ I++G +++ + + V F +F + + DF K K
Sbjct: 125 ELLIKSPIKVISQG---INLDIAKAAHKKVDNVIEFEYFPIEQYKIHMNDFQLSKPTKKT 181
Query: 166 LDIASGTAVRFEPGEEKSVE-LIDIGGNRRIFG 197
LD+ G + R E K VE L D G N FG
Sbjct: 182 LDVIYGGSFRSGQRESKMVEFLFDTGLNIEFFG 214
>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
Length = 521
Score = 28.5 bits (62), Expect = 0.72
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 36 VALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVG-IEAMFPDGTKLV 94
V ++ AH+M+E R + A ++ EG ++L+ + + + + + G I F D KL
Sbjct: 43 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLF 102
Query: 95 TV 96
V
Sbjct: 103 EV 104
>pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 373
Score = 28.5 bits (62), Expect = 0.72
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 36 VALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVG-IEAMFPDGTKLV 94
V ++ AH+M+E R + A ++ EG ++L+ + + + + + G I F D KL
Sbjct: 24 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLF 83
Query: 95 TV 96
V
Sbjct: 84 EV 85
>pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|E Chain E, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 372
Score = 28.5 bits (62), Expect = 0.72
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 36 VALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVG-IEAMFPDGTKLV 94
V ++ AH+M+E R + A ++ EG ++L+ + + + + + G I F D KL
Sbjct: 43 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLF 102
Query: 95 TV 96
V
Sbjct: 103 EV 104
>pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(Tacrolimus)
Length = 375
Score = 28.1 bits (61), Expect = 0.94
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 36 VALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVG-IEAMFPDGTKLV 94
V ++ AH+M+E R + A ++ EG ++L+ + + + + + G I F D KL
Sbjct: 26 VDILKAHLMKEGRLEETVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLF 85
Query: 95 TV 96
V
Sbjct: 86 EV 87
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
Factor
Length = 557
Score = 27.7 bits (60), Expect = 1.2
Identities = 23/83 (27%), Positives = 37/83 (43%), Gaps = 4/83 (4%)
Query: 110 ELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIA 169
E E I EG+ + V ++N + P+ + EVN+ L D+ K+F +R +
Sbjct: 81 ERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVL--DKMKSFCQR--VR 136
Query: 170 SGTAVRFEPGEEKSVELIDIGGN 192
SG + V I IGG+
Sbjct: 137 SGDWKGYTGKTITDVINIGIGGS 159
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Length = 558
Score = 27.7 bits (60), Expect = 1.2
Identities = 23/83 (27%), Positives = 37/83 (43%), Gaps = 4/83 (4%)
Query: 110 ELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIA 169
E E I EG+ + V ++N + P+ + EVN+ L D+ K+F +R +
Sbjct: 82 ERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVL--DKMKSFCQR--VR 137
Query: 170 SGTAVRFEPGEEKSVELIDIGGN 192
SG + V I IGG+
Sbjct: 138 SGDWKGYTGKTITDVINIGIGGS 160
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome - Mg-Adp-Alf3 Complex
Length = 543
Score = 27.3 bits (59), Expect = 1.6
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 11 LMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGRTLLKPDDV 70
++L E AK K GI + E ++ ++E R GK+ + +L+ DDV
Sbjct: 460 ILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDV 519
Query: 71 M 71
+
Sbjct: 520 I 520
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile
Pyrococcus Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile
Pyrococcus Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile
Pyrococcus Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile
Pyrococcus Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile
Pyrococcus Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile
Pyrococcus Furiosus
pdb|1XGO| Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 26.2 bits (56), Expect = 3.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 8 LDKLMLHYAGELAKKRKEKGIKL 30
+D L AGE+AKK +EK IKL
Sbjct: 1 MDTEKLMKAGEIAKKVREKAIKL 23
>pdb|1LNR|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 100
Score = 25.8 bits (55), Expect = 4.7
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 160 KTFGKRLDIASGTAVRFEP-----GEEKSVELIDIGGNRRIFGFNA 200
+T GK+ ++ G +R E G++ ++ + +GG + +FG +A
Sbjct: 6 QTGGKQYRVSEGDVIRVESLQGEAGDKVELKALFVGGEQTVFGEDA 51
>pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
Length = 510
Score = 25.4 bits (54), Expect = 6.1
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 43 IMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASM--IHEVGIEAM--FPDGTKLVTVHT 98
I+EE G T+ +L + GR L + DG+A + + V E M F G K ++++
Sbjct: 11 ILEERILGADTSVDLEETGRVL----SIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNL 66
Query: 99 PIEANGKLVPG-ELFLKNEDITINEG 123
+ G +V G + +K DI G
Sbjct: 67 EPDNVGVVVFGNDKLIKEGDIVKRTG 92
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 25.4 bits (54), Expect = 6.1
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 43 IMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASM--IHEVGIEAM--FPDGTKLVTVHT 98
I+EE G T+ +L + GR L + DG+A + + V E M F G K ++++
Sbjct: 11 ILEERILGADTSVDLEETGRVL----SIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNL 66
Query: 99 PIEANGKLVPG-ELFLKNEDITINEG 123
+ G +V G + +K DI G
Sbjct: 67 EPDNVGVVVFGNDKLIKEGDIVKRTG 92
>pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 510
Score = 25.4 bits (54), Expect = 6.1
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 43 IMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASM--IHEVGIEAM--FPDGTKLVTVHT 98
I+EE G T+ +L + GR L + DG+A + + V E M F G K ++++
Sbjct: 11 ILEERILGADTSVDLEETGRVL----SIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNL 66
Query: 99 PIEANGKLVPG-ELFLKNEDITINEG 123
+ G +V G + +K DI G
Sbjct: 67 EPDNVGVVVFGNDKLIKEGDIVKRTG 92
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 25.0 bits (53), Expect = 8.0
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 23 RKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVM 71
++E + +YVEA+ + H++ + K T + GR K D ++
Sbjct: 239 KQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLV 287
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 25.0 bits (53), Expect = 8.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 50 GKKTAAELMQEGRTLLKPDDVMDG----VASMIHEVGIEAMFPDGTKL 93
G K A + GR+ L + +G VAS G A PDG+KL
Sbjct: 184 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 231
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
Length = 439
Score = 25.0 bits (53), Expect = 8.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 50 GKKTAAELMQEGRTLLKPDDVMDG----VASMIHEVGIEAMFPDGTKL 93
G K A + GR+ L + +G VAS G A PDG+KL
Sbjct: 212 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 259
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 25.0 bits (53), Expect = 8.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 20 AKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGRTLLKPDD 69
A++ EK IK+ + L S HI E ++ KK +EL + L DD
Sbjct: 139 ARRYLEKSIKMGKRNGLHL-SEHIRNEIKSMKKRMSELCIDFNKNLNEDD 187
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 25.0 bits (53), Expect = 8.0
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 15 YAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQ 59
Y G LA + + G +++ + +I + +AGK T E +
Sbjct: 259 YFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQE 303
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 25.0 bits (53), Expect = 8.0
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 23 RKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGRTLLKPDDVM 71
++E + +YVEA+ + H++ + K T + GR K D ++
Sbjct: 239 KQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLV 287
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 25.0 bits (53), Expect = 8.0
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 15 YAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQ 59
Y G LA + + G +++ + +I + +AGK T E +
Sbjct: 259 YFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQE 303
>pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
Length = 759
Score = 25.0 bits (53), Expect = 8.0
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 15 YAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQ 59
Y G LA + + G +++ + +I + +AGK T E +
Sbjct: 259 YFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQE 303
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,369,689
Number of Sequences: 13198
Number of extensions: 54870
Number of successful extensions: 155
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 31
length of query: 238
length of database: 2,899,336
effective HSP length: 85
effective length of query: 153
effective length of database: 1,777,506
effective search space: 271958418
effective search space used: 271958418
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)