BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645341|ref|NP_207513.1| hypothetical protein
[Helicobacter pylori 26695]
(109 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 31 0.023
pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-R... 26 0.56
pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus ... 26 0.56
pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoen... 26 0.56
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2... 26 0.73
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 25 1.6
pdb|1OUT|A Chain A, Trout Hemoglobin I >gi|1942656|pdb|1OUU... 24 2.8
pdb|1A34|A Chain A, Refined Structure Of Satellite Tobacco ... 23 3.6
pdb|1F6Y|A Chain A, Mad Crystal Structure Analysis Of Methy... 23 4.8
pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carbox... 23 6.2
pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 23 6.2
pdb|1I35|A Chain A, Solution Structure Of The Ras-Binding D... 23 6.2
pdb|1K8R|B Chain B, Crystal Structure Of Ras-Bry2rbd Complex 23 6.2
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 30.8 bits (68), Expect = 0.023
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 69 MEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEGFQKN 108
M VSKR KT+N D + A +RI K++S+ KN
Sbjct: 412 MPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKN 451
>pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1118
Score = 26.2 bits (56), Expect = 0.56
Identities = 15/53 (28%), Positives = 26/53 (48%)
Query: 52 LLKLAGTLPSNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEG 104
L L +P +E D ++R++T+ A +FR +R+AR +M G
Sbjct: 310 LFALTAGVPGHEVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVMG 362
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1119
Score = 26.2 bits (56), Expect = 0.56
Identities = 15/53 (28%), Positives = 26/53 (48%)
Query: 52 LLKLAGTLPSNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEG 104
L L +P +E D ++R++T+ A +FR +R+AR +M G
Sbjct: 310 LFALTAGVPGHEVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVMG 362
>pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|C Chain C, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1118
Score = 26.2 bits (56), Expect = 0.56
Identities = 15/53 (28%), Positives = 26/53 (48%)
Query: 52 LLKLAGTLPSNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEG 104
L L +P +E D ++R++T+ A +FR +R+AR +M G
Sbjct: 310 LFALTAGVPGHEVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVMG 362
>pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
Length = 382
Score = 25.8 bits (55), Expect = 0.73
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 65 IDYRMEVSKRLKTLNAEDA-KKFRANFSRIARKNLSKMSEGFQK 107
++ E+ L+++ EDA K RANFS ++ +N +SE F +
Sbjct: 281 LEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEVFHQ 324
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 24.6 bits (52), Expect = 1.6
Identities = 14/53 (26%), Positives = 25/53 (46%)
Query: 52 LLKLAGTLPSNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEG 104
L L +P +E D ++R++T+ +FR +R+AR +M G
Sbjct: 310 LFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMG 362
>pdb|1OUT|A Chain A, Trout Hemoglobin I
pdb|1OUU|A Chain A, Carbonmonoxy Trout Hemoglobin I
pdb|1OUU|C Chain C, Carbonmonoxy Trout Hemoglobin I
Length = 143
Score = 23.9 bits (50), Expect = 2.8
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 18 KGLGMRRSLAFYLLALLGLQVLGAR----DFSQLKNEELLKLAGTLPSNEAIDYRMEVSK 73
K +G+ L + AL L R +F L + L+ LA PS+ + + V K
Sbjct: 70 KAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDK 129
Query: 74 RLKTLNAEDAKKFR 87
L ++A A K+R
Sbjct: 130 FLAAVSAALADKYR 143
>pdb|1A34|A Chain A, Refined Structure Of Satellite Tobacco Mosaic Virus At 1.8
Angstroms Resolution
Length = 159
Score = 23.5 bits (49), Expect = 3.6
Identities = 11/45 (24%), Positives = 24/45 (52%)
Query: 50 EELLKLAGTLPSNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIA 94
EE A + + ++ YR+ + R T+ A++ + R+N ++A
Sbjct: 107 EEFEGRASNINTRASVGYRIPTNLRQNTVAADNVCEVRSNCRQVA 151
>pdb|1F6Y|A Chain A, Mad Crystal Structure Analysis Of Methyltetrahydrofolate:
CorrinoidIRON-Sulfur Protein Methyltransferase (Metr)
pdb|1F6Y|B Chain B, Mad Crystal Structure Analysis Of Methyltetrahydrofolate:
CorrinoidIRON-Sulfur Protein Methyltransferase (Metr)
Length = 262
Score = 23.1 bits (48), Expect = 4.8
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Query: 36 LQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLN--AEDAKKFRANFSRI 93
++++ A D L E+L LP+N A D+ EV K L+ + A+ A K S +
Sbjct: 141 MELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNV 200
Query: 94 AR 95
++
Sbjct: 201 SQ 202
>pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|B Chain B, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|C Chain C, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|D Chain D, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1KA2|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Mg
pdb|1KA4|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Nat-Pb
Length = 499
Score = 22.7 bits (47), Expect = 6.2
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 26 LAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLP 60
L F L L+ + + A+D ++ N+E+ +L G P
Sbjct: 365 LRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRP 399
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 22.7 bits (47), Expect = 6.2
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 75 LKTLNAEDAKKFRANFSRIARK 96
++ LNAE+A+KF+ F ++
Sbjct: 140 IRFLNAENAQKFKTKFEECRKE 161
>pdb|1I35|A Chain A, Solution Structure Of The Ras-Binding Domain Of The
Protein Kinase Byr2 From Schizosaccharomyces Pombe
Length = 95
Score = 22.7 bits (47), Expect = 6.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 DYRMEVSKRLKTLNAEDAKKFRANFSRIARKNL 98
DY+ ++ LK + EDA KF S+ +R L
Sbjct: 20 DYQKTLAIALKKFSLEDASKFIVCVSQSSRIKL 52
>pdb|1K8R|B Chain B, Crystal Structure Of Ras-Bry2rbd Complex
Length = 110
Score = 22.7 bits (47), Expect = 6.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 DYRMEVSKRLKTLNAEDAKKFRANFSRIARKNL 98
DY+ ++ LK + EDA KF S+ +R L
Sbjct: 20 DYQKTLAIALKKFSLEDASKFIVCVSQSSRIKL 52
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,234
Number of Sequences: 13198
Number of extensions: 17082
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 13
length of query: 109
length of database: 2,899,336
effective HSP length: 85
effective length of query: 24
effective length of database: 1,777,506
effective search space: 42660144
effective search space used: 42660144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)