BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645343|ref|NP_207515.1| hypothetical protein
[Helicobacter pylori 26695]
(152 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 28 0.35
pdb|1JFK|A Chain A, Minimum Energy Representative Structure... 26 2.3
pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase >... 26 2.3
pdb|1D3Y|B Chain B, Structure Of The Dna Topoisomerase Vi A... 26 2.3
pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase >... 25 3.0
pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-... 25 5.1
pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces ... 24 6.6
pdb|1PBO|A Chain A, Complex Of Bovine Odorant Binding Prote... 24 6.6
pdb|1G85|A Chain A, Crystal Structure Of Bovine Odorant Bin... 24 6.6
pdb|1HN2|A Chain A, Crystal Structure Of Bovine Obp Complex... 24 6.6
pdb|1OBP|A Chain A, Odorant-Binding Protein From Bovine Nas... 24 6.6
pdb|1HBN|A Chain A, Methyl-Coenzyme M Reductase >gi|1582679... 24 8.7
pdb|1MRO|A Chain A, Methyl-Coenzyme M Reductase >gi|3891381... 24 8.7
pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit ... 24 8.7
pdb|1POI|A Chain A, Crystal Structure Of Glutaconate Coenzy... 24 8.7
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 28.5 bits (62), Expect = 0.35
Identities = 26/93 (27%), Positives = 47/93 (49%), Gaps = 13/93 (13%)
Query: 24 SKTSDEDLAKMAGV----VAPQDIVDYTKELKKRMEK----MPEDKRKAFHKQLHEYATK 75
SK +E L K + + V P+ + ELK+R+E + E+ ++ ++AT+
Sbjct: 49 SKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEXELIHLGEEYHDGIRRRKEQHATE 108
Query: 76 NTDKMTVADFEARQKAVKE--ALKKGNMEDMDD 106
T K+T AR+K + E ALK+ + ++ D
Sbjct: 109 QTAKITEL---AREKQIAELKALKESSESNIKD 138
>pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium
Bound Ef-Hand Protein From Entamoeba Histolytica
pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
Length = 134
Score = 25.8 bits (55), Expect = 2.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 2 KKALKILSVSALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED 60
K+A+K + L+F +++A + + AK G + QD+ D LK + M D
Sbjct: 29 KRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVD 87
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 25.8 bits (55), Expect = 2.3
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 55 EKMPEDKRKAFHKQLHE--YATKNTDKMTVADFEARQKAVKEALKKGN 100
E + +D RK + + L++ +A + T+K+++ A +K ++ L++GN
Sbjct: 55 EPLNDDDRKPWLQALNDAAFAXQRTNKVSLIVCSALKKHYRDLLREGN 102
>pdb|1D3Y|B Chain B, Structure Of The Dna Topoisomerase Vi A Subunit
pdb|1D3Y|A Chain A, Structure Of The Dna Topoisomerase Vi A Subunit
Length = 301
Score = 25.8 bits (55), Expect = 2.3
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 18/71 (25%)
Query: 32 AKMAGVVAPQDIVDY---TKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEAR 88
A++ GV PQDI+DY T LK++ K +D KN D V F
Sbjct: 213 ARLIGVT-PQDIIDYDLPTHPLKEQDIKRIKD------------GLKNDD--FVRSFPEW 257
Query: 89 QKAVKEALKKG 99
QKA+K+ L G
Sbjct: 258 QKALKQMLDMG 268
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 25.4 bits (54), Expect = 3.0
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 55 EKMPEDKRKAFHKQLHE--YATKNTDKMTVADFEARQKAVKEALKKGN 100
E + +D RK + + L++ +A + T+K+++ A +K ++ L++GN
Sbjct: 55 EPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGN 102
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 24.6 bits (52), Expect = 5.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 71 EYATKNTDKMTVADFEARQKAVKEALKKGNMED 103
E+ K +K A EA K KEAL KGN+E+
Sbjct: 85 EFKRKELEKRREAREEAELKW-KEALAKGNLEE 116
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin-Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin-Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin-Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 24.3 bits (51), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 133 DKDHDDKDHDHHDEDHSD 150
D D DD D D D+D +D
Sbjct: 152 DMDDDDDDDDDDDDDEAD 169
Score = 23.9 bits (50), Expect = 8.7
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 90 KAVKEALKKGNMEDMDDD 107
K VKE ++K +DMDDD
Sbjct: 139 KRVKETVEKSWEDDMDDD 156
>pdb|1PBO|A Chain A, Complex Of Bovine Odorant Binding Protein (Obp) With A
Selenium Containing Odorant
pdb|1PBO|B Chain B, Complex Of Bovine Odorant Binding Protein (Obp) With A
Selenium Containing Odorant
Length = 159
Score = 24.3 bits (51), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 61 KRKAFHKQLHEYATKNTDKMTVADFEAR 88
KR K +H ATK D VAD+E +
Sbjct: 59 KRDGKWKNVHVKATKQDDGTYVADYEGQ 86
>pdb|1G85|A Chain A, Crystal Structure Of Bovine Odorant Binding Protein
Complexed With Is Natural Ligand
pdb|1G85|B Chain B, Crystal Structure Of Bovine Odorant Binding Protein
Complexed With Is Natural Ligand
Length = 159
Score = 24.3 bits (51), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 61 KRKAFHKQLHEYATKNTDKMTVADFEAR 88
KR K +H ATK D VAD+E +
Sbjct: 59 KRDGKWKNVHVKATKQDDGTYVADYEGQ 86
>pdb|1HN2|A Chain A, Crystal Structure Of Bovine Obp Complexed With
Aminoanthracene
pdb|1HN2|B Chain B, Crystal Structure Of Bovine Obp Complexed With
Aminoanthracene
Length = 159
Score = 24.3 bits (51), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 61 KRKAFHKQLHEYATKNTDKMTVADFEAR 88
KR K +H ATK D VAD+E +
Sbjct: 59 KRDGKWKNVHVKATKQDDGTYVADYEGQ 86
>pdb|1OBP|A Chain A, Odorant-Binding Protein From Bovine Nasal Mucosa
pdb|1OBP|B Chain B, Odorant-Binding Protein From Bovine Nasal Mucosa
Length = 159
Score = 24.3 bits (51), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 61 KRKAFHKQLHEYATKNTDKMTVADFEAR 88
KR K +H ATK D VAD+E +
Sbjct: 59 KRDGKWKNVHVKATKQDDGTYVADYEGQ 86
>pdb|1HBN|A Chain A, Methyl-Coenzyme M Reductase
pdb|1HBN|D Chain D, Methyl-Coenzyme M Reductase
pdb|1HBO|A Chain A, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|D Chain D, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBM|A Chain A, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|D Chain D, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBU|A Chain A, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|D Chain D, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
Length = 549
Score = 23.9 bits (50), Expect = 8.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 46 YTKELKKRMEKMPEDKRKAFH 66
+ LKK+ E+ PE+K+ F+
Sbjct: 5 FINALKKKFEESPEEKKTTFY 25
>pdb|1MRO|A Chain A, Methyl-Coenzyme M Reductase
pdb|1MRO|D Chain D, Methyl-Coenzyme M Reductase
Length = 548
Score = 23.9 bits (50), Expect = 8.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 46 YTKELKKRMEKMPEDKRKAFH 66
+ LKK+ E+ PE+K+ F+
Sbjct: 5 FINALKKKFEESPEEKKTTFY 25
>pdb|1A8Y| Crystal Structure Of Calsequestrin From Rabbit Skeletal Muscle
Sarcoplasmic Reticulum At 2.4 A Resolution
Length = 367
Score = 23.9 bits (50), Expect = 8.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 103 DMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDKDHDHHDED 147
+MDD+ L S + + D G+ + +D DD+D D D+D
Sbjct: 326 EMDDEEDLPSAEELEDWLEDV---LEGEINTEDDDDEDDDDDDDD 367
>pdb|1POI|A Chain A, Crystal Structure Of Glutaconate Coenzyme A-Transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
pdb|1POI|C Chain C, Crystal Structure Of Glutaconate Coenzyme A-Transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
Length = 317
Score = 23.9 bits (50), Expect = 8.7
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 47 TKELKKRMEKMPEDKRK 63
+KE++K ++K+P+DK K
Sbjct: 136 SKEVRKTLDKVPDDKFK 152
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 923,268
Number of Sequences: 13198
Number of extensions: 37469
Number of successful extensions: 95
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 17
length of query: 152
length of database: 2,899,336
effective HSP length: 80
effective length of query: 72
effective length of database: 1,843,496
effective search space: 132731712
effective search space used: 132731712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)