BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645344|ref|NP_207517.1| L-asparaginase II (ansB)
[Helicobacter pylori 26695]
(330 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1WSA|B Chain B, Structure Of Wolinella Succinogenes L-A... 346 2e-96
pdb|3ECA|A Chain A, Asparaginase Type Ii (E.C.3.5.1.1) (Eca... 311 5e-86
pdb|1HO3|A Chain A, Crystal Structure Analysis Of E. Coli L... 310 1e-85
pdb|4ECA|A Chain A, Asparaginase From E. Coli, Mutant T89v ... 308 7e-85
pdb|4PGA|A Chain A, Glutaminase-Asparaginase From Pseudomon... 278 6e-76
pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a Glu... 276 2e-75
pdb|3PGA|1 Chain 1, Glutaminase-Asparaginase (E.C.3.5.1.1) ... 274 1e-74
pdb|1HG0|A Chain A, X-Ray Structure Of The Complex Between ... 270 1e-73
pdb|1AGX| Glutaminase-Asparaginase (E.C.3.5.1.1) 259 2e-70
pdb|1YTB|A Chain A, Tata-Box Binding Protein (Ytbp) Complex... 31 0.17
pdb|1TBP|A Chain A, Tata-Binding Protein (Tbp, C-Terminal 1... 31 0.17
pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna 30 0.49
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm D... 30 0.49
pdb|1TGH|A Chain A, Human Tbp Complex With Tata Element Dna 29 0.65
pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Te... 29 0.65
pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core D... 29 0.65
pdb|1I36|A Chain A, Mth1747-Conserved Hypothetical Protein ... 28 1.1
pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of... 28 1.9
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methan... 27 2.5
pdb|1YFM| Recombinant Yeast Fumarase 26 5.5
>pdb|1WSA|B Chain B, Structure Of Wolinella Succinogenes L-Asparaginase Ii
pdb|1WSA|A Chain A, Structure Of Wolinella Succinogenes L-Asparaginase Ii
Length = 330
Score = 346 bits (887), Expect = 2e-96
Identities = 177/328 (53%), Positives = 242/328 (72%), Gaps = 4/328 (1%)
Query: 6 PTIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQDM 65
P + +LATGGTIAGSG S+ SY +G + + +LL A+P++N LA I+GEQIS+IGSQ+M
Sbjct: 4 PQVTILATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKGEQISSIGSQEM 63
Query: 66 NEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRNAA 125
+VW KLAKR ELL + V+ITHGTDT+EE+A+FLNL ++S KPVVLVGAMR +
Sbjct: 64 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKSQKPVVLVGAMRPGS 123
Query: 126 SLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALNSGAI 185
S+SADG +NLYNAV+VA+N+ S NKGV++VM+D I +ARE K +TT + F + N+G I
Sbjct: 124 SMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREATKLNTTAVNAFASPNTGKI 183
Query: 186 GSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNSHAKG 245
G+VYYGK Y+ Q +R HT SEF +S+++ LP+VDI+Y H T L A+L + AKG
Sbjct: 184 GTVYYGKVEYFTQSVRPHTLASEFDISKIE-ELPRVDILYAHPDDTDVLVNAALQAGAKG 242
Query: 246 VVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEIT-SGEIDDK--AFITSDNLN 302
++ AG+GNGN A+++A++ GVV+ RSSRV SG T E+DDK F+ +++LN
Sbjct: 243 IIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQEAEVDDKKLGFVATESLN 302
Query: 303 PQKARVLLQLALTKTNNKEKIQEMFEEY 330
PQKARVLL LALTKT+++E IQ++F Y
Sbjct: 303 PQKARVLLMLALTKTSDREAIQKIFSTY 330
>pdb|3ECA|A Chain A, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
pdb|3ECA|B Chain B, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
pdb|3ECA|C Chain C, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
pdb|3ECA|D Chain D, Asparaginase Type Ii (E.C.3.5.1.1) (Eca)
Length = 326
Score = 311 bits (798), Expect = 5e-86
Identities = 162/329 (49%), Positives = 227/329 (68%), Gaps = 6/329 (1%)
Query: 5 LPTIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQD 64
LP I +LATGGTIAG G SA+ +Y G++G++ L+ A+P L +A ++GEQ+ NIGSQD
Sbjct: 1 LPNITILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQD 60
Query: 65 MNEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRNA 124
MN+ VW LAK+ D + G VITHGTDT+EE+AYFL+L ++ KPVV+VGAMR +
Sbjct: 61 MNDNVWLTLAKKINT--DCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPS 118
Query: 125 ASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALNSGA 184
S+SADG NLYNAV A ++ SAN+GVLVVM+D + R+V KT+TT +TFK++N G
Sbjct: 119 TSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGP 178
Query: 185 IGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNSHAK 244
+G ++ GK Y P RKHT+++ F +S+L LPKV I+Y +A + +A +++
Sbjct: 179 LGYIHNGKIDYQRTPARKHTSDTPFDVSKL-NELPKVGIVYNYANASDLPAKALVDAGYD 237
Query: 245 GVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEIT-SGEIDDK--AFITSDNL 301
G+V AGVGNGN+ + A++ G +VRSSRV +G T E+DD F+ S L
Sbjct: 238 GIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTL 297
Query: 302 NPQKARVLLQLALTKTNNKEKIQEMFEEY 330
NPQKARVLLQLALT+T + ++IQ++F +Y
Sbjct: 298 NPQKARVLLQLALTQTKDPQQIQQIFNQY 326
>pdb|1HO3|A Chain A, Crystal Structure Analysis Of E. Coli L-Asparaginase Ii
(Y25f Mutant)
pdb|1HO3|B Chain B, Crystal Structure Analysis Of E. Coli L-Asparaginase Ii
(Y25f Mutant)
Length = 326
Score = 310 bits (794), Expect = 1e-85
Identities = 161/329 (48%), Positives = 227/329 (68%), Gaps = 6/329 (1%)
Query: 5 LPTIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQD 64
LP I +LATGGTIAG G SA+ ++ G++G++ L+ A+P L +A ++GEQ+ NIGSQD
Sbjct: 1 LPNITILATGGTIAGGGDSATKSNFTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQD 60
Query: 65 MNEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRNA 124
MN+ VW LAK+ D + G VITHGTDT+EE+AYFL+L ++ KPVV+VGAMR +
Sbjct: 61 MNDNVWLTLAKKINT--DCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPS 118
Query: 125 ASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALNSGA 184
S+SADG NLYNAV A ++ SAN+GVLVVM+D + R+V KT+TT +TFK++N G
Sbjct: 119 TSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGP 178
Query: 185 IGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNSHAK 244
+G ++ GK Y P RKHT+++ F +S+L LPKV I+Y +A + +A +++
Sbjct: 179 LGYIHNGKIDYQRTPARKHTSDTPFDVSKL-NELPKVGIVYNYANASDLPAKALVDAGYD 237
Query: 245 GVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEIT-SGEIDDK--AFITSDNL 301
G+V AGVGNGN+ + A++ G +VRSSRV +G T E+DD F+ S L
Sbjct: 238 GIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTL 297
Query: 302 NPQKARVLLQLALTKTNNKEKIQEMFEEY 330
NPQKARVLLQLALT+T + ++IQ++F +Y
Sbjct: 298 NPQKARVLLQLALTQTKDPQQIQQIFNQY 326
>pdb|4ECA|A Chain A, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|B Chain B, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|C Chain C, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|D Chain D, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
Length = 326
Score = 308 bits (788), Expect = 7e-85
Identities = 160/329 (48%), Positives = 225/329 (67%), Gaps = 6/329 (1%)
Query: 5 LPTIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQD 64
LP I +LATGG IAG G SA+ +Y G++G++ L+ A+P L +A ++GEQ+ NIGSQD
Sbjct: 1 LPNITILATGGXIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQD 60
Query: 65 MNEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRNA 124
MN+ VW LAK+ D + G VITHG DT+EE+AYFL+L ++ KPVV+VGAMR +
Sbjct: 61 MNDNVWLTLAKKINT--DCDKTDGFVITHGVDTMEETAYFLDLTVKCDKPVVMVGAMRPS 118
Query: 125 ASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALNSGA 184
S+SADG NLYNAV A ++ SAN+GVLVVM+D + R+V KT+TT +TFK++N G
Sbjct: 119 TSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGP 178
Query: 185 IGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNSHAK 244
+G ++ GK Y P RKHT+++ F +S+L LPKV I+Y +A + +A +++
Sbjct: 179 LGYIHNGKIDYQRTPARKHTSDTPFDVSKL-NELPKVGIVYNYANASDLPAKALVDAGYD 237
Query: 245 GVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEIT-SGEIDDK--AFITSDNL 301
G+V AGVGNGN+ + A++ G +VRSSRV +G T E+DD F+ S L
Sbjct: 238 GIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTL 297
Query: 302 NPQKARVLLQLALTKTNNKEKIQEMFEEY 330
NPQKARVLLQLALT+T + ++IQ++F +Y
Sbjct: 298 NPQKARVLLQLALTQTKDPQQIQQIFNQY 326
>pdb|4PGA|A Chain A, Glutaminase-Asparaginase From Pseudomonas 7a
pdb|4PGA|B Chain B, Glutaminase-Asparaginase From Pseudomonas 7a
Length = 337
Score = 278 bits (711), Expect = 6e-76
Identities = 147/333 (44%), Positives = 223/333 (66%), Gaps = 7/333 (2%)
Query: 3 QNLPTIALLATGGTIAGSGASAS-LGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIG 61
Q L + +LATGGTIAG+GASA+ +Y++ ++G+ +L+ +P L LA ++GEQ+ I
Sbjct: 7 QKLANVVILATGGTIAGAGASAANSATYQAAKVGVDKLIAGVPELADLANVRGEQVMQIA 66
Query: 62 SQDMNEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAM 121
S+ + + KL KR EL D + + G+VITHGTDTLEE+AYFLNLV ++ KP+V+VG+M
Sbjct: 67 SESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQKTDKPIVVVGSM 126
Query: 122 RNAASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALN 181
R ++SADG LNLYNAV+VA N+ S KGVLV M+D I S R+V K+ T FK+
Sbjct: 127 RPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDVSKSINIKTEAFKSA- 185
Query: 182 SGAIGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNS 241
G +G V GK+ ++ P ++HT SEF + Q+ + LP+VDI Y++ +T ++A +
Sbjct: 186 WGPLGMVVEGKSYWFRLPAKRHTVNSEFDIKQISS-LPQVDIAYSYGNVTDTAYKALAQN 244
Query: 242 HAKGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEI---TSGEIDDK-AFIT 297
AK ++ AG GNG+VS+ + A+Q+ + G I+RSS VN G + + DDK ++
Sbjct: 245 GAKALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQPDDKNDWVV 304
Query: 298 SDNLNPQKARVLLQLALTKTNNKEKIQEMFEEY 330
+ +LNP+KAR+L +A+TKT + +++Q +F EY
Sbjct: 305 AHDLNPEKARILAMVAMTKTQDSKELQRIFWEY 337
>pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a Glutaminase-
Asparaginase With The Inhibitor Don Covalently Bound In
The Active Site
pdb|1DJP|B Chain B, Crystal Structure Of Pseudomonas 7a Glutaminase-
Asparaginase With The Inhibitor Don Covalently Bound In
The Active Site
pdb|1DJO|A Chain A, Crystal Structure Of Pseudomonas 7a Glutaminase-
Asparaginase With The Inhibitor Donv Covalently Bound In
The Active Site
pdb|1DJO|B Chain B, Crystal Structure Of Pseudomonas 7a Glutaminase-
Asparaginase With The Inhibitor Donv Covalently Bound In
The Active Site
Length = 330
Score = 276 bits (706), Expect = 2e-75
Identities = 146/331 (44%), Positives = 222/331 (66%), Gaps = 7/331 (2%)
Query: 5 LPTIALLATGGTIAGSGASAS-LGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQ 63
L + +LATGGTIAG+GASA+ +Y++ ++G+ +L+ +P L LA ++GEQ+ I S+
Sbjct: 2 LANVVILATGGTIAGAGASAANSATYQAAKVGVDKLIAGVPELADLANVRGEQVMQIASE 61
Query: 64 DMNEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRN 123
+ + KL KR EL D + + G+VITHGTDTLEE+AYFLNLV ++ KP+V+VG+MR
Sbjct: 62 SITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQKTDKPIVVVGSMRP 121
Query: 124 AASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALNSG 183
++SADG LNLYNAV+VA N+ S KGVLV M+D I S R+V K+ T FK+ G
Sbjct: 122 GTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDVSKSINIKTEAFKSA-WG 180
Query: 184 AIGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNSHA 243
+G V GK+ ++ P ++HT SEF + Q+ + LP+VDI Y++ +T ++A + A
Sbjct: 181 PLGMVVEGKSYWFRLPAKRHTVNSEFDIKQISS-LPQVDIAYSYGNVTDTAYKALAQNGA 239
Query: 244 KGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEI---TSGEIDDK-AFITSD 299
K ++ AG GNG+VS+ + A+Q+ + G I+RSS VN G + + DDK ++ +
Sbjct: 240 KALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQPDDKNDWVVAH 299
Query: 300 NLNPQKARVLLQLALTKTNNKEKIQEMFEEY 330
+LNP+KAR+L +A+TKT + +++Q +F EY
Sbjct: 300 DLNPEKARILAMVAMTKTQDSKELQRIFWEY 330
>pdb|3PGA|1 Chain 1, Glutaminase-Asparaginase (E.C.3.5.1.1) (Amidohydrolase,
Asparaginase)
pdb|3PGA|2 Chain 2, Glutaminase-Asparaginase (E.C.3.5.1.1) (Amidohydrolase,
Asparaginase)
pdb|3PGA|3 Chain 3, Glutaminase-Asparaginase (E.C.3.5.1.1) (Amidohydrolase,
Asparaginase)
pdb|3PGA|4 Chain 4, Glutaminase-Asparaginase (E.C.3.5.1.1) (Amidohydrolase,
Asparaginase)
Length = 337
Score = 274 bits (700), Expect = 1e-74
Identities = 145/331 (43%), Positives = 220/331 (65%), Gaps = 7/331 (2%)
Query: 5 LPTIALLATGGTIAGSGASAS-LGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQ 63
L + +LATGGTIAG+GASA+ +Y++ ++G+ +L+ +P L LA ++GEQ+ I S+
Sbjct: 9 LANVVILATGGTIAGAGASAANSATYQAAKVGVDKLIAGVPELADLANVRGEQVMQIASE 68
Query: 64 DMNEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRN 123
+ + KL KR EL D + + G+VITHGTDTLEE+AYFL+L L + KP+V+VG+MR
Sbjct: 69 SITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLDLTLNTDKPIVVVGSMRP 128
Query: 124 AASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALNSG 183
++SADG LNLYNAV+VA N+ S KGVLV M+D I S R+V K+ T FK+ G
Sbjct: 129 GTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDVSKSINIKTEAFKSA-WG 187
Query: 184 AIGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNSHA 243
+G V GK+ ++ P ++HT SEF + Q+ + LP+VDI Y++ +T ++A + A
Sbjct: 188 PLGMVVEGKSYWFRLPAKRHTVNSEFDIKQISS-LPQVDIAYSYGNVTDTAYKALAQNGA 246
Query: 244 KGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEI---TSGEIDDK-AFITSD 299
K ++ AG GNG+VS+ A+Q + G I+RSS VN G + + DDK ++ +
Sbjct: 247 KALIHAGTGNGSVSSRLTPALQTLRKTGTQIIRSSHVNQGGFVLRNAEQPDDKNDWVVAH 306
Query: 300 NLNPQKARVLLQLALTKTNNKEKIQEMFEEY 330
+LNP+KAR+L++LA+ KT + +++Q +F EY
Sbjct: 307 DLNPEKARILVELAMVKTQDSKELQRIFWEY 337
>pdb|1HG0|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HFJ|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1HFJ|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1JSR|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSL|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-D-Norleucine
pdb|1JSL|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-D-Norleucine
pdb|1JSL|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-D-Norleucine
pdb|1JSL|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-D-Norleucine
pdb|1HFK|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HFK|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HG1|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HFW|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HG1|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HFW|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HG1|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HFW|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
Length = 327
Score = 270 bits (691), Expect = 1e-73
Identities = 153/331 (46%), Positives = 218/331 (65%), Gaps = 6/331 (1%)
Query: 2 AQNLPTIALLATGGTIAGSGASASLGS-YKSGELGIKELLKAIPSLNRLARIQGEQISNI 60
A LP I +LATGGTIAGS A+ + + YK+G LG+ L+ A+P + +LA ++GEQ SN+
Sbjct: 1 ADKLPNIVILATGGTIAGSAATGTQTTGYKAGALGVDTLINAVPEVKKLANVKGEQFSNM 60
Query: 61 GSQDMNEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGA 120
S++M +V KL++R ELL + GVVITHGTDT+EESAYFL+L ++S KPVV V A
Sbjct: 61 ASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKSDKPVVFVAA 120
Query: 121 MRNAASLSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKAL 180
MR A ++SADG +NL AV VA +++S +GV+VV++D I SAR + KT+ + TF+A
Sbjct: 121 MRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVINDRIGSARYITKTNASTLDTFRAN 180
Query: 181 NSGAIGSVYYGKTRYYMQPLRK-HTTESEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASL 239
G +G V G YY + K HTT S F + L T LPKVDI+Y + L+ A++
Sbjct: 181 EEGYLG-VIIGNRIYYQNRIDKLHTTRSVFDVRGL-TSLPKVDILYGYQDDPEYLYDAAI 238
Query: 240 NSHAKGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVNSGEITSGEIDDKAFITSD 299
KG+V AG+G G+VS + M++A + GVV++RS+R +G + E + + SD
Sbjct: 239 QHGVKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTGNGIVPPDE--ELPGLVSD 296
Query: 300 NLNPQKARVLLQLALTKTNNKEKIQEMFEEY 330
+LNP AR+LL LALT+T++ + IQE F Y
Sbjct: 297 SLNPAHARILLMLALTRTSDPKVIQEYFHTY 327
>pdb|1AGX| Glutaminase-Asparaginase (E.C.3.5.1.1)
Length = 331
Score = 259 bits (663), Expect = 2e-70
Identities = 140/329 (42%), Positives = 223/329 (67%), Gaps = 7/329 (2%)
Query: 8 IALLATGGTIAGSGASAS-LGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQDMN 66
+ ++ATGGTIAG+GAS++ +Y + ++ + L+KA+P +N LA I G Q + S+ +
Sbjct: 4 VVIVATGGTIAGAGASSTNSATYSAAKVPVDALIKAVPQVNDLANITGIQALQVASESIT 63
Query: 67 EEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRNAAS 126
++ LA++ +L+ + GVVITHGTDT+EE+A+FLNLV+ + KP+VLVG+MR + +
Sbjct: 64 DKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVHTDKPIVLVGSMRPSTA 123
Query: 127 LSADGALNLYNAVSVALNEKSANKGVLVVMDDNIFSAREVIKTHTTHTSTFKALNSGAIG 186
LSADG LNLY+AV++A + ++ NKGV+V+M+D+IF+AR+V K HT F + GA+G
Sbjct: 124 LSADGPLNLYSAVALASSNEAKNKGVMVLMNDSIFAARDVTKGINIHTHAFVS-QWGALG 182
Query: 187 SVYYGKTRYYMQPLRKHTTESEFSLSQLK-TPLPKVDIIYTHAGMTPDLFQASLNSHAKG 245
++ GK ++ ++KHT SEF++ +++ LP V I+Y M PD +QA + K
Sbjct: 183 TLVEGKPYWFRSSVKKHTNNSEFNIEKIQGDALPGVQIVYGSDNMMPDAYQAFAKAGVKA 242
Query: 246 VVIAGVGNGNVSAGFLKAMQEA-SQMGVVIVRSSRVNSGEI--TSGEIDDK-AFITSDNL 301
++ AG GNG+++ + +++ + G+ IVRSSRV G + + + DDK +I + +L
Sbjct: 243 IIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQGFVLRNAEQPDDKYGWIAAHDL 302
Query: 302 NPQKARVLLQLALTKTNNKEKIQEMFEEY 330
NPQKAR+L+ LALTKTN+ ++IQ MF Y
Sbjct: 303 NPQKARLLMALALTKTNDAKEIQNMFWNY 331
>pdb|1YTB|A Chain A, Tata-Box Binding Protein (Ytbp) Complexed With Dna
Containing Tata-Box
pdb|1YTB|B Chain B, Tata-Box Binding Protein (Ytbp) Complexed With Dna
Containing Tata-Box
pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
Length = 180
Score = 31.2 bits (69), Expect = 0.17
Identities = 27/113 (23%), Positives = 48/113 (41%), Gaps = 20/113 (17%)
Query: 7 TIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISNI-GSQDM 65
T AL+ G + +GA S +L ++ + I + A+ +I NI GS D+
Sbjct: 51 TTALIFASGKMVVTGAK----SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDV 106
Query: 66 NEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLV 118
+ R++G+ +HGT + E F L+ R KP +++
Sbjct: 107 KFPI---------------RLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVL 144
>pdb|1TBP|A Chain A, Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)
pdb|1TBP|B Chain B, Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)
Length = 180
Score = 31.2 bits (69), Expect = 0.17
Identities = 27/113 (23%), Positives = 48/113 (41%), Gaps = 20/113 (17%)
Query: 7 TIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISNI-GSQDM 65
T AL+ G + +GA S +L ++ + I + A+ +I NI GS D+
Sbjct: 51 TTALIFASGKMVVTGAK----SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDV 106
Query: 66 NEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLV 118
+ R++G+ +HGT + E F L+ R KP +++
Sbjct: 107 KFPI---------------RLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVL 144
>pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 29.6 bits (65), Expect = 0.49
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 7 TIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISN-IGSQDM 65
T AL+ + G + +GA S ++ L ++ + + L A+ +I N +GS D+
Sbjct: 51 TTALIFSSGKMVCTGAK----SEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDV 106
Query: 66 NEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLV 118
+ R++G+V+TH + E F L+ R KP +++
Sbjct: 107 KFPI---------------RLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVL 144
>pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
Length = 297
Score = 29.6 bits (65), Expect = 0.49
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Query: 289 EIDDKAFITSDNLNPQKARVLLQLALTKTNNKEKIQEMFEEY 330
EI ++ +D L PQ RVL Q LTK +E+IQ EE+
Sbjct: 140 EIHKPGYLANDRLLPQ--RVLEQHKLTKEQWEERIQNWHEEH 179
>pdb|1TGH|A Chain A, Human Tbp Complex With Tata Element Dna
Length = 185
Score = 29.3 bits (64), Expect = 0.65
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 7 TIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISN-IGSQDM 65
T AL+ + G + +GA S + L ++ + + L A+ +I N +GS D+
Sbjct: 55 TTALIFSSGKMVCTGAK----SEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDV 110
Query: 66 NEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLV 118
+ R++G+V+TH + E F L+ R KP +++
Sbjct: 111 KFPI---------------RLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVL 148
>pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 29.3 bits (64), Expect = 0.65
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 7 TIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISN-IGSQDM 65
T AL+ + G + +GA S + L ++ + + L A+ +I N +GS D+
Sbjct: 55 TTALIFSSGKMVCTGAK----SEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDV 110
Query: 66 NEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLV 118
+ R++G+V+TH + E F L+ R KP +++
Sbjct: 111 KFPI---------------RLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVL 148
>pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 29.3 bits (64), Expect = 0.65
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 7 TIALLATGGTIAGSGASASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISN-IGSQDM 65
T AL+ + G + +GA S + L ++ + + L A+ +I N +GS D+
Sbjct: 52 TTALIFSSGKMVCTGAK----SEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDV 107
Query: 66 NEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLV 118
+ R++G+V+TH + E F L+ R KP +++
Sbjct: 108 KFPI---------------RLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVL 145
>pdb|1I36|A Chain A, Mth1747-Conserved Hypothetical Protein Reveals Structural
Similarity With 3-Hydroxyacid Dehydrogenases
pdb|1I36|B Chain B, Mth1747-Conserved Hypothetical Protein Reveals Structural
Similarity With 3-Hydroxyacid Dehydrogenases
Length = 264
Score = 28.5 bits (62), Expect = 1.1
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 5/57 (8%)
Query: 68 EVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRNA 124
EV L R+ ++ +R GV T+T EE Y +V+ + P V +GA R A
Sbjct: 25 EVVTSLEGRSPSTIERARTVGV-----TETSEEDVYSCPVVISAVTPGVALGAARRA 76
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 27.7 bits (60), Expect = 1.9
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 2/42 (4%)
Query: 27 GSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQDMNEE 68
G + E G +E L+AI L RI GEQ+S G+ M EE
Sbjct: 309 GEWIPNEFGGRENLEAIEFLRNTNRILGEQVS--GAVTMAEE 348
>pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 27.3 bits (59), Expect = 2.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 150 KGVLVVMDDNI---FSAREVIKTHTTHTSTFKALNSGAIGSVY 189
+G+L + +N FS R ++ H S A+N+ A+ S+Y
Sbjct: 172 QGILSIPQNNEGLGFSLRNIMANHVAAISNRNAMNASALSSIY 214
>pdb|1YFM| Recombinant Yeast Fumarase
Length = 488
Score = 26.2 bits (56), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 1 MAQNLPTIALLATGGTIAGSGASASLG 27
+A +L T++ LA GGT G+G + G
Sbjct: 240 VAHSLKTLSFLAQGGTAVGTGLNTKPG 266
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.129 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,717,519
Number of Sequences: 13198
Number of extensions: 66279
Number of successful extensions: 208
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 20
length of query: 330
length of database: 2,899,336
effective HSP length: 89
effective length of query: 241
effective length of database: 1,724,714
effective search space: 415656074
effective search space used: 415656074
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)