BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646201|ref|NP_207519.1| outer membrane protein
[Helicobacter pylori 26695]
(629 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ESL| E-Selectin (Lectin And Egf Domains, Residues 1 ... 28 3.1
pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinE... 28 3.1
pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinosit... 28 4.0
pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex 28 4.0
pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Fl... 28 4.0
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinosit... 28 4.0
pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinosit... 28 4.0
pdb|1F15|C Chain C, Cucumber Mosaic Virus (Strain Fny) >gi|... 27 6.8
pdb|1DJN|A Chain A, Structural And Biochemical Characteriza... 27 8.9
pdb|1DJQ|A Chain A, Structural And Biochemical Characteriza... 27 8.9
>pdb|1ESL| E-Selectin (Lectin And Egf Domains, Residues 1 - 157) (Formerly
Known As Elam-1)
Length = 162
Score = 28.1 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 27 YEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSF 63
Y++ S Y Q + +IQN IE +NS L+Y S+
Sbjct: 12 YDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSY 48
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 28.1 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 27 YEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSF 63
Y++ S Y Q + +IQN IE +NS L+Y S+
Sbjct: 12 YDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSY 48
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 966
Score = 27.7 bits (60), Expect = 4.0
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 6 QIGEAVQMVKNTGELKNLN-EKYEQLSQYLNQVASLKQSIQNANNIELVNS 55
Q+ E +Q V T ++K+L+ EKY+ SQ ++Q LKQ ++N N +L S
Sbjct: 595 QVIEMLQKV--TLDIKSLSAEKYDVSSQVISQ---LKQKLENLQNSQLPES 640
>pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex
Length = 965
Score = 27.7 bits (60), Expect = 4.0
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 6 QIGEAVQMVKNTGELKNLN-EKYEQLSQYLNQVASLKQSIQNANNIELVNS 55
Q+ E +Q V T ++K+L+ EKY+ SQ ++Q LKQ ++N N +L S
Sbjct: 594 QVIEMLQKV--TLDIKSLSAEKYDVSSQVISQ---LKQKLENLQNSQLPES 639
>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
Length = 398
Score = 27.7 bits (60), Expect = 4.0
Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 8/91 (8%)
Query: 17 TGELKNLNEKYEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPI 76
T +K L Q S+ N S+ Q+ + A N +N++L ++ + NST
Sbjct: 2 TANIKGLT----QASRNANDGISIAQTTEGALNE--INNNLQRVRELAVQSANSTNSQSD 55
Query: 77 FNAVQAVITSVLGFWSLYAGNYFTFFVGKKV 107
+++QA IT L +G T F G KV
Sbjct: 56 LDSIQAEITQRLNEIDRVSGQ--TQFNGVKV 84
>pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
Length = 961
Score = 27.7 bits (60), Expect = 4.0
Identities = 17/42 (40%), Positives = 27/42 (63%), Gaps = 4/42 (9%)
Query: 15 KNTGELKNLN-EKYEQLSQYLNQVASLKQSIQNANNIELVNS 55
K T ++K+L+ EKY+ SQ ++Q LKQ ++N N+ L S
Sbjct: 603 KVTIDIKSLSAEKYDVSSQVISQ---LKQKLENLQNLNLPQS 641
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 27.7 bits (60), Expect = 4.0
Identities = 17/42 (40%), Positives = 27/42 (63%), Gaps = 4/42 (9%)
Query: 15 KNTGELKNLN-EKYEQLSQYLNQVASLKQSIQNANNIELVNS 55
K T ++K+L+ EKY+ SQ ++Q LKQ ++N N+ L S
Sbjct: 603 KVTIDIKSLSAEKYDVSSQVISQ---LKQKLENLQNLNLPQS 641
>pdb|1F15|C Chain C, Cucumber Mosaic Virus (Strain Fny)
pdb|1F15|B Chain B, Cucumber Mosaic Virus (Strain Fny)
pdb|1F15|A Chain A, Cucumber Mosaic Virus (Strain Fny)
Length = 218
Score = 26.9 bits (58), Expect = 6.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 408 KNAPAAGQSNYQINPEQQSNLNQALAA 434
++AP++ +N+++ +Q S LN+ LAA
Sbjct: 22 RSAPSSADANFRVLSQQLSRLNKTLAA 48
>pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|2TMD|A Chain A, Trimethylamine Dehydrogenase (E.C.1.5.99.7)
pdb|2TMD|B Chain B, Trimethylamine Dehydrogenase (E.C.1.5.99.7)
Length = 729
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/40 (32%), Positives = 24/40 (59%)
Query: 1 MSAGYQIGEAVQMVKNTGELKNLNEKYEQLSQYLNQVASL 40
+ AG EA +++ +G +L + E++ +LNQVA+L
Sbjct: 395 VGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL 434
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/40 (32%), Positives = 24/40 (59%)
Query: 1 MSAGYQIGEAVQMVKNTGELKNLNEKYEQLSQYLNQVASL 40
+ AG EA +++ +G +L + E++ +LNQVA+L
Sbjct: 395 VGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL 434
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,567,232
Number of Sequences: 13198
Number of extensions: 149200
Number of successful extensions: 347
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 10
length of query: 629
length of database: 2,899,336
effective HSP length: 94
effective length of query: 535
effective length of database: 1,658,724
effective search space: 887417340
effective search space used: 887417340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)