BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645346|ref|NP_207520.1| hypothetical protein
[Helicobacter pylori 26695]
(305 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvat... 33 0.041
pdb|1PYM|A Chain A, Phosphoenolpyruvate Mutase From Mollusk... 33 0.041
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gram... 31 0.15
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 27 2.9
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 27 3.8
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 27 3.8
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 27 3.8
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 27 3.8
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 27 3.8
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
Length = 295
Score = 33.1 bits (74), Expect = 0.041
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 109 WG-DVEYAKAQLGQKVGGNTLLSQANY-DPNAIKTYDSASNTQGPLVLQKTPSPQNFLFN 166
WG D +A+ + G + +L + DP+ I+ + A N QGP+V+ T + +
Sbjct: 167 WGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPT---KYYKTP 223
Query: 167 NGHFMAFGLNVNVFVNLPIDTLLKLALKTEKMLF 200
HF G+++ ++ N + + +T K ++
Sbjct: 224 TDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIY 257
>pdb|1PYM|A Chain A, Phosphoenolpyruvate Mutase From Mollusk In With Bound Mg2-
Oxalate
pdb|1PYM|B Chain B, Phosphoenolpyruvate Mutase From Mollusk In With Bound Mg2-
Oxalate
Length = 295
Score = 33.1 bits (74), Expect = 0.041
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 109 WG-DVEYAKAQLGQKVGGNTLLSQANY-DPNAIKTYDSASNTQGPLVLQKTPSPQNFLFN 166
WG D +A+ + G + +L + DP+ I+ + A N QGP+V+ T + +
Sbjct: 167 WGLDEALKRAEAYRNAGADAILXHSKKADPSDIEAFXKAWNNQGPVVIVPT---KYYKTP 223
Query: 167 NGHFMAFGLNVNVFVNLPIDTLLKLALKTEKMLF 200
HF G++ ++ N + + +T K ++
Sbjct: 224 TDHFRDXGVSXVIWANHNLRASVSAIQQTTKQIY 257
>pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 31.2 bits (69), Expect = 0.15
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 42 GFRLGTGANVHTSMWQQAYKDNPTCPGSVCYGEKLEAHYQGGKNLSYTGQIGDEIAFDKH 101
G L G + Q + DNP PG Y +A + N+ Y G+I +++ H
Sbjct: 379 GEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGH 438
Query: 102 HI 103
+
Sbjct: 439 RV 440
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 26.9 bits (58), Expect = 2.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 202 KIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFFVNFGGSLY 248
KIG+FGG GV +L N + G AG G G LY
Sbjct: 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLY 199
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 26.6 bits (57), Expect = 3.8
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 202 KIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFFVNFGGSLY 248
KIG+FGG GV +L N G AG G G LY
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 201
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 26.6 bits (57), Expect = 3.8
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 202 KIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFFVNFGGSLY 248
KIG+FGG GV +L N G AG G G LY
Sbjct: 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 197
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.6 bits (57), Expect = 3.8
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 202 KIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFFVNFGGSLY 248
KIG+FGG GV +L N G AG G G LY
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 201
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.6 bits (57), Expect = 3.8
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 202 KIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFFVNFGGSLY 248
KIG+FGG GV +L N G AG G G LY
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 201
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 26.6 bits (57), Expect = 3.8
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 202 KIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFFVNFGGSLY 248
KIG+FGG GV +L N G AG G G LY
Sbjct: 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 201
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,994,629
Number of Sequences: 13198
Number of extensions: 94324
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 9
length of query: 305
length of database: 2,899,336
effective HSP length: 88
effective length of query: 217
effective length of database: 1,737,912
effective search space: 377126904
effective search space used: 377126904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)