BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645348|ref|NP_207522.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(336 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complex... 27 3.3
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaper... 27 3.3
pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7... 26 7.3
pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C... 26 7.3
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Su... 26 7.3
pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna... 26 7.3
pdb|2BOP|A Chain A, Bovine Papillomavirus-1 E2 (Dna-Binding... 25 9.6
pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (... 25 9.6
pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (... 25 9.6
pdb|1JJH|B Chain B, E2 Dna-Binding Domain From Bovine Papil... 25 9.6
pdb|1DBD|A Chain A, E2 Dna-Binding Domain From Papillomavir... 25 9.6
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 26.9 bits (58), Expect = 3.3
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 9 EPLKEGKNLLGFSGGLDSTCLFFLL---VGEN---IVFDIALVDYNTQKQRLEI 56
E + + K +LG SGG+DS+ LL +G+N + D L+ N +Q L++
Sbjct: 223 EQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM 276
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 26.9 bits (58), Expect = 3.3
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 276 DKEHVFIALKPPKTLSMPKDFKDRARRLDIPKRLRPVLYAEF--LKQPTHDFLTRFK 330
D+E LK K++ P D K + LD KRL P LY + K+ FL ++
Sbjct: 29 DQEAHVAKLKEDKSVD-PYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQ 84
>pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Complexed With
Dctp
pdb|1DPI| DNA Polymerase I (Klenow Fragment) (E.C.2.7.7.7) - dCMP Complex
Length = 605
Score = 25.8 bits (55), Expect = 7.3
Identities = 14/61 (22%), Positives = 32/61 (51%)
Query: 201 IQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKR 260
+Q+ ++E R+ I + + I YSQ L ++ + + KG + +F++ ++I R
Sbjct: 353 LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHR 412
Query: 261 S 261
+
Sbjct: 413 A 413
>pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Mutant
With Asp 355 Replaced By Ala (D355a) Complexed With Dna
Length = 605
Score = 25.8 bits (55), Expect = 7.3
Identities = 14/61 (22%), Positives = 32/61 (51%)
Query: 201 IQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKR 260
+Q+ ++E R+ I + + I YSQ L ++ + + KG + +F++ ++I R
Sbjct: 353 LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHR 412
Query: 261 S 261
+
Sbjct: 413 A 413
>pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|1KFS|A Chain A, All-Oxygen Dna Complexed To The 3'-5' Exonuclease Of Dna
Polymerase I From E. Coli
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1KRP|A Chain A, Rp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1KSP|A Chain A, Sp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 25.8 bits (55), Expect = 7.3
Identities = 14/61 (22%), Positives = 32/61 (51%)
Query: 201 IQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKR 260
+Q+ ++E R+ I + + I YSQ L ++ + + KG + +F++ ++I R
Sbjct: 353 LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHR 412
Query: 261 S 261
+
Sbjct: 413 A 413
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 25.8 bits (55), Expect = 7.3
Identities = 14/61 (22%), Positives = 32/61 (51%)
Query: 201 IQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKR 260
+Q+ ++E R+ I + + I YSQ L ++ + + KG + +F++ ++I R
Sbjct: 353 LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHR 412
Query: 261 S 261
+
Sbjct: 413 A 413
>pdb|2BOP|A Chain A, Bovine Papillomavirus-1 E2 (Dna-Binding Domain)
(Residues 325 - 410) Complexed With Dna
Length = 85
Score = 25.4 bits (54), Expect = 9.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 2 QDFKTHLEPLKEGKNLLGFSGGLD 25
QDF H+ PL G N+ GF+ LD
Sbjct: 62 QDFLKHV-PLPPGMNISGFTASLD 84
>pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|2 Chain 2, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|3 Chain 3, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|4 Chain 4, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
Length = 465
Score = 25.4 bits (54), Expect = 9.6
Identities = 15/45 (33%), Positives = 28/45 (61%), Gaps = 4/45 (8%)
Query: 242 ILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKP 286
++K+ G+ F+ K++IK S L+ A F+I ++ E + +AL P
Sbjct: 134 LIKRSGH---FTLKDQIKNSLSMLKGAYAFLIMTETE-MIVALDP 174
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 25.4 bits (54), Expect = 9.6
Identities = 15/45 (33%), Positives = 28/45 (61%), Gaps = 4/45 (8%)
Query: 242 ILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKP 286
++K+ G+ F+ K++IK S L+ A F+I ++ E + +AL P
Sbjct: 134 LIKRSGH---FTLKDQIKNSLSMLKGAYAFLIMTETE-MIVALDP 174
>pdb|1JJH|B Chain B, E2 Dna-Binding Domain From Bovine Papillomavirus Type 1
pdb|1JJH|A Chain A, E2 Dna-Binding Domain From Bovine Papillomavirus Type 1
pdb|1JJH|C Chain C, E2 Dna-Binding Domain From Bovine Papillomavirus Type 1
Length = 86
Score = 25.4 bits (54), Expect = 9.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 2 QDFKTHLEPLKEGKNLLGFSGGLD 25
QDF H+ PL G N+ GF+ LD
Sbjct: 63 QDFLKHV-PLPPGMNISGFTASLD 85
>pdb|1DBD|A Chain A, E2 Dna-Binding Domain From Papillomavirus Bpv-1
pdb|1DBD|B Chain B, E2 Dna-Binding Domain From Papillomavirus Bpv-1
Length = 100
Score = 25.4 bits (54), Expect = 9.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 2 QDFKTHLEPLKEGKNLLGFSGGLD 25
QDF H+ PL G N+ GF+ LD
Sbjct: 77 QDFLKHV-PLPPGMNISGFTASLD 99
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,816,087
Number of Sequences: 13198
Number of extensions: 70731
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 11
length of query: 336
length of database: 2,899,336
effective HSP length: 89
effective length of query: 247
effective length of database: 1,724,714
effective search space: 426004358
effective search space used: 426004358
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)