BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645349|ref|NP_207523.1| hypothetical protein
[Helicobacter pylori 26695]
(355 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EU4|A Chain A, Crystal Structure Of The Superantigen S... 28 1.2
pdb|1HRN|A Chain A, Renin Complexed With Polyhydroxymonoami... 28 1.6
pdb|2REN| Renin (E.C.3.4.23.15) >gi|443239|pdb|1RNE| Ren... 28 1.6
pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (C... 28 2.1
pdb|1SMR|A Chain A, Renin (E.C.3.4.23.15) Complex With The ... 27 3.5
pdb|1BQV| Pointed Domain And Map Kinase Phosphorylation S... 27 3.5
pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Comple... 27 4.6
pdb|1DMU|A Chain A, Crystal Structure Of The Restriction En... 26 7.9
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 26 7.9
>pdb|1EU4|A Chain A, Crystal Structure Of The Superantigen Spe-H (Zinc Bound)
From Streptococcus Pyogenes
pdb|1ET9|A Chain A, Crystal Structure Of The Superantigen Spe-H From
Streptococcus Pyogenes
Length = 204
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/49 (42%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Query: 52 YKATNEKNFLQLFLTDYANLFAAKVIKVSKDIDESLIPSY-YKEKNLEV 99
Y TN N L+ D +NL A IK S DI S + Y K+KNL V
Sbjct: 3 YNTTNRHNLESLYKHD-SNLIEADSIKNSPDIVTSHMLKYSVKDKNLSV 50
>pdb|1HRN|A Chain A, Renin Complexed With Polyhydroxymonoamide Inhibitor Bila
980
pdb|1BIL|A Chain A, Mol_id: 1; Molecule: Renin; Chain: A, B; Engineered: Yes;
Heterogen: Butanediamide Inhibitor Bila 1908;
Other_details: Glycosylated
pdb|1BIM|A Chain A, Mol_id: 1; Molecule: Renin; Chain: A, B; Engineered: Yes;
Heterogen: Butanediamide Inhibitor Bila 2151;
Other_details: Glycosylated
pdb|1HRN|B Chain B, Renin Complexed With Polyhydroxymonoamide Inhibitor Bila
980
pdb|1BIL|B Chain B, Mol_id: 1; Molecule: Renin; Chain: A, B; Engineered: Yes;
Heterogen: Butanediamide Inhibitor Bila 1908;
Other_details: Glycosylated
pdb|1BIM|B Chain B, Mol_id: 1; Molecule: Renin; Chain: A, B; Engineered: Yes;
Heterogen: Butanediamide Inhibitor Bila 2151;
Other_details: Glycosylated
Length = 337
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 206 LELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKKVLLKACKNDPSLYDLAYEVQGKSYT 265
L L+ + ++ TS I K + L + LF V C P+L D+++ + GK YT
Sbjct: 219 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVV---KCNEGPTLPDISFHLGGKEYT 275
Query: 266 L 266
L
Sbjct: 276 L 276
>pdb|2REN| Renin (E.C.3.4.23.15)
pdb|1RNE| Renin (Activated, Glycosylated, Inhibited) (E.C.3.4.23.15) Complex
With Cgp 38'560
pdb|1BBS| Renin (E.C.3.4.23.15)
Length = 340
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 206 LELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKKVLLKACKNDPSLYDLAYEVQGKSYT 265
L L+ + ++ TS I K + L + LF V C P+L D+++ + GK YT
Sbjct: 222 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVV---KCNEGPTLPDISFHLGGKEYT 278
Query: 266 L 266
L
Sbjct: 279 L 279
>pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (Cucurbita Moschata)
Glycerol-3-Phosphate (1)-Acyltransferase
Length = 368
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 17/50 (34%)
Query: 97 LEVEDFFIISDLRELVREDFSLLRDQFLANFIAPNNHTYAIYGNNYVYPL 146
L+VED F+ S + +RE F Y I+G NY+ PL
Sbjct: 74 LDVEDPFVFSSHHKAIREPFD-----------------YYIFGQNYIRPL 106
>pdb|1SMR|A Chain A, Renin (E.C.3.4.23.15) Complex With The Inhibitor Ch-66
Length = 335
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 245 ACKNDPSLYDLAYEVQGKSYTLK--DFFTKKPN 275
+C P+L D+++ + G++YTL D+ + PN
Sbjct: 253 SCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPN 285
>pdb|1BQV| Pointed Domain And Map Kinase Phosphorylation Site From Murine
Ets-1 Transcription Factor, Nmr, 28 Structures
Length = 110
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 186 GKRLFYLLHPDSINNIIHAELELLQSEN 213
GK F L PD + +I+ LE+LQ E+
Sbjct: 81 GKECFLELAPDFVGDILWEHLEILQKED 108
>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 199
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 21/39 (52%)
Query: 159 GDEKHYLSVYKSKEYLTMQENFMRFVFGKRLFYLLHPDS 197
G++ V+ + LT Q+ +R V RLF+ LH DS
Sbjct: 142 GEKNEPYPVWSEQSSLTSQDENVRRVAFYRLFHCLHRDS 180
>pdb|1DMU|A Chain A, Crystal Structure Of The Restriction Endonuclease Bgli
(E.C.3.1.21.4) Bound To Its Dna Recognition Sequence
Length = 299
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 7 LYNPYYQQDVIQQHLSVLQEKSQV-GFGKIRSKLNDQEKQDSLEEIYKATNEKNFLQLFL 65
++ Y Q + +QEK ++ G + ++D E EEI NE NFL F
Sbjct: 9 IFMSYNQNKQYLEDNPEIQEKIELYGLNLLNEVISDNE-----EEIRADYNEANFLHPFW 63
Query: 66 TDYANLFAAKVIK 78
+Y L K+ K
Sbjct: 64 MNYPPLDRGKMPK 76
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 25.8 bits (55), Expect = 7.9
Identities = 39/172 (22%), Positives = 68/172 (38%), Gaps = 31/172 (18%)
Query: 26 EKSQVGFGKIRSKLNDQEKQDSLEEIYKATNEKNFLQ-------LFLTDYANLFAA---K 75
+++Q + K S N + Q ++EE YK + +L+ ++ +Y A
Sbjct: 1048 DRTQFIWMKYFSIFNTELSQSNIEERYKIQSYSEYLKDFWGNPLMYNKEYYMFNAGNKNS 1107
Query: 76 VIKVSKD--IDESLIPSYYKE-------KNLEVEDFFII--SDLRELVREDFSLLRDQFL 124
IK+ KD + E L S Y + ++L + + FII + + +D D
Sbjct: 1108 YIKLKKDSPVGEILTRSKYNQNSKYINYRDLYIGEKFIIRRKSNSQSINDDIVRKEDYIY 1167
Query: 125 ANFIAPNNHTYAIYGNNYVYPLPVRLKEERSYFL---GDEKHYLSVYKSKEY 173
+F N + +Y Y KEE FL D + + + KEY
Sbjct: 1168 LDFFNLNQE-WRVYTYKYF------KKEEEKLFLAPISDSDEFYNTIQIKEY 1212
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,994,084
Number of Sequences: 13198
Number of extensions: 81755
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 9
length of query: 355
length of database: 2,899,336
effective HSP length: 89
effective length of query: 266
effective length of database: 1,724,714
effective search space: 458773924
effective search space used: 458773924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)